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alexg Palsson [13 articles]

Recent papers posted to alexg library by the author Palsson. You can also see Palsson everyone.
  • Global reconstruction of the human metabolic network based on genomic and bibliomic data.
    Proc Natl Acad Sci U S A, Vol. 104, No. 6. (31 January 2007), pp. 1777-1782.
    by Natalie CC Duarte, Scott AA Becker, Neema Jamshidi, Ines Thiele, Monica LL Mo, Thuy DD Vo, Rohith Srivas, Bernhard OO Palsson
    posted to systems_biology by alexg on 2007-10-01 05:33:03 as ** along with 4 people and 1 group jyuh balajis raiyar noby steinmetzlab
  • Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets
    BMC Systems Biology, Vol. 1, No. 1. (2007), 26.
    by Neema Jamshidi, Bernhard Palsson
    posted to systems_biology by alexg on 2007-10-01 05:32:43 as ** along with 1 person JeremyZucker
  • Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data.
    J Biol Chem, Vol. 282, No. 39. (28 September 2007), pp. 28791-28799.
    by YK Oh, BO Palsson, SM Park, CH Schilling, R Mahadevan
    posted to systems_biology by alexg on 2007-10-01 05:32:28 as ** along with 1 person hryk
  • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
    Mol Syst Biol, Vol. 3 (26 June 2007), 121.
    by Adam M Feist, Christopher S Henry, Jennifer L Reed, Markus Krummenacker, Andrew R Joyce, Peter D Karp, Linda J Broadbelt, Vassily Hatzimanikatis, Bernhard O Palsson
    posted to flux_balance_analysis systems_biology by alexg on 2007-07-31 07:08:42 as ***** along with 4 people JeremyZucker michaelbarton hryk cjeans
  • Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox.
    Nat Protoc, Vol. 2, No. 3. (2007), pp. 727-738.
    by SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard
    posted to flux_balance_analysis metabolism by alexg on 2007-04-24 07:47:56 as **** along with 2 people jyuh edwardmorrissey
  • Integrating high-throughput and computational data elucidates bacterial networks.
    Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96.
    by MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
    posted to net_paper by alexg on 2006-08-18 02:02:23 as ** along with 5 people and 2 groups JeremyZucker Retchless lfriedl RMGraze raiyar kdl steinmetzlab
  • The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states.
    Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 19103-19108.
    by CL Barrett, CD Herring, JL Reed, BO Palsson
    posted to enzyme metabolism net_paper regulation by alexg on 2006-05-22 06:55:33 as ** along with 3 people heliopais madhadron comb
  • Metabolic pathways in the post-genome era.
    Trends Biochem Sci, Vol. 28, No. 5. (May 2003), pp. 250-258.
    by JA Papin, ND Price, SJ Wiback, DA Fell, BO Palsson
    posted to metabolism net_paper pathways by alexg on 2005-12-06 00:40:09 as ** along with 2 people and 1 group camster tny dbk-lab
  • Comparison of network-based pathway analysis methods.
    Trends Biotechnol, Vol. 22, No. 8. (August 2004), pp. 400-405.
    by JA Papin, J Stelling, ND Price, S Klamt, S Schuster, BO Palsson
    posted to metabolism networks pathways by alexg on 2005-10-24 14:34:03 as *** along with 2 people and 1 group camster madhadron dbk-lab
  • Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.
    Trends Biochem Sci, Vol. 29, No. 12. (December 2004), pp. 641-647.
    by JA Papin, JL Reed, BO Palsson
    posted to metabolism networks pathways by alexg on 2005-10-24 14:33:36 as ** along with 2 people and 3 groups camster korakot Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
  • Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective.
    J Theor Biol, Vol. 203, No. 3. (7 April 2000), pp. 229-248.
    by CH Schilling, D Letscher, BO Palsson
    posted to metabolism pathways by alexg on 2005-10-24 14:32:23 as ****
  • Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis.
    J Theor Biol, Vol. 203, No. 3. (7 April 2000), pp. 249-283.
    by CH Schilling, BO Palsson
    posted to metabolism pathways by alexg on 2005-10-24 14:31:14 as **
  • Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems.
    Biotechnol Bioeng, Vol. 71, No. 4., pp. 286-306.
    by CH Schilling, JS Edwards, D Letscher, BØ Palsson
    posted to flux_balance_analysis metabolism pathways by alexg on 2005-10-24 14:30:15 as **
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