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alexg metabolism [57 articles]

Recent papers added to alexg library classified by the tag metabolism. You can also see everyone's metabolism.
  • A mathematical model for the branched chain amino acid biosynthetic pathways of Escherichia coli K12.
    J Biol Chem, Vol. 280, No. 12. (25 March 2005), pp. 11224-11232.
    by CR Yang, BE Shapiro, SP Hung, ED Mjolsness, GW Hatfield
    posted to metabolism regulation by alexg on 2007-10-01 06:02:45 as **
  • Feedback inhibition of dihydrodipicolinate synthase enzymes by L-lysine.
    Biol Chem, Vol. 378, No. 3-4. (r 1997), pp. 207-210.
    by S Blickling, J Knäblein
    posted to metabolism regulation by alexg on 2007-10-01 06:00:58 as **
  • The molecular pathway for the allosteric regulation of tryptophan synthase.
    Biochim Biophys Acta, Vol. 1647, No. 1-2. (11 April 2003), pp. 157-160.
    by S Raboni, B Pioselli, S Bettati, A Mozzarelli
    posted to metabolism regulation by alexg on 2007-10-01 05:55:39 as **
  • Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis.
    Annu Rev Genet, Vol. 39 (2005), pp. 47-68.
    by P Gollnick, P Babitzke, A Antson, C Yanofsky
    posted to metabolism regulation by alexg on 2007-10-01 05:55:00 as **
  • Regulation of blood glucose homeostasis during prolonged exercise.
    Mol Cells, Vol. 23, No. 3. (30 June 2007), pp. 272-279.
    by SH Suh, IY Paik, K Jacobs
    posted to metabolism regulation by alexg on 2007-10-01 05:50:06 as **
  • Control theory of regulatory cascades.
    J Theor Biol, Vol. 153, No. 2. (21 November 1991), pp. 255-285.
    by D Kahn, HV Westerhoff
    posted to metabolism by alexg on 2007-09-14 03:20:32 as ****
  • Bow ties, metabolism and disease
    Trends in Biotechnology, Vol. 22, No. 9. (September 2004), pp. 446-450.
    by Marie Csete, John Doyle
    posted to metabolism systems_biology by alexg on 2007-08-24 06:10:59 as **** along with 1 person and 2 groups rhem1224 TCR_Signaling SysbioMPI-TCells
  • Integration of metabolome data with metabolic networks reveals reporter reactions.
    Mol Syst Biol, Vol. 2 (2006)
    by T Cakir, KR Patil, Z Onsan, KO Ulgen, B Kirdar, J Nielsen
    posted to metabolism systems_biology by alexg on 2007-08-15 09:08:12 as ****
  • Uncovering transcriptional regulation of metabolism by using metabolic network topology.
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2685-2689.
    by KR Patil, J Nielsen
    posted to metabolism systems_biology by alexg on 2007-08-15 09:07:09 as **** along with 1 person and 1 group raiyar steinmetzlab
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to metabolism systems_biology by alexg on 2007-08-06 06:27:02 as ***** along with 8 people and 2 groups alanrw shikin irenas nicklynch dullhunk mhucka raiyar fishtank GeneGo steinmetzlab
  • Current Progress in computational metabolomics.
    Brief Bioinform (11 July 2007)
    by David S S Wishart
    posted to metabolism systems_biology by alexg on 2007-08-06 06:24:46 as **** along with 1 person and 1 group jyuh Bioinformatics
  • Underground metabolism
    BioEssays, Vol. 20, No. 2. (1998), pp. 181-186.
    by Richard D'Ari, Josep Casadesús
    posted to metabolism by alexg on 2007-08-06 06:20:02 as *****
  • Differential metabolic networks unravel the effects of silent plant phenotypes.
    Proc Natl Acad Sci U S A, Vol. 101, No. 20. (18 May 2004), pp. 7809-7814.
    by W Weckwerth, ME Loureiro, K Wenzel, O Fiehn
    posted to metabolism systems_biology by alexg on 2007-07-30 08:09:23 as ***
  • High-throughput metabolic state analysis: the missing link in integrated functional genomics of yeasts.
    Biochem J, Vol. 388, No. Pt 2. (1 June 2005), pp. 669-677.
    by SG Villas-Bôas, JF Moxley, M Akesson, G Stephanopoulos, J Nielsen
    posted to metabolism systems_biology by alexg on 2007-07-30 08:07:53 as ***
  • Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
    Nature (21 January 2007)
    by Igor Martianov, Aroul Ramadass, Ana S Barros, Natalie Chow, Alexandre Akoulitchev
    posted to metabolism ncrna by alexg on 2007-07-30 06:52:18 as ***** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • From genomes to in silico cells via metabolic networks.
    Curr Opin Biotechnol, Vol. 16, No. 3. (June 2005), pp. 350-355.
    by I Borodina, J Nielsen
    posted to metabolism systems_biology by alexg on 2007-07-30 06:47:35 as ***** along with 1 person Ema
  • Assessing responses to cancer therapy using molecular imaging.
    Biochim Biophys Acta, Vol. 1766, No. 2. (December 2006), pp. 242-261.
    by AA Neves, KM Brindle
    posted to metabolism nmr by alexg on 2007-07-30 05:26:26 as **
  • Metabolic consequences of p300 gene deletion in human colon cancer cells.
    Cancer Res, Vol. 66, No. 15. (1 August 2006), pp. 7606-7614.
    by JG Bundy, NG Iyer, MS Gentile, DE Hu, M Kettunen, AT Maia, NP Thorne, JD Brenton, C Caldas, KM Brindle
    posted to metabolism nmr by alexg on 2007-07-30 05:26:01 as ***
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
    posted to metabolism nmr systems_biology by alexg on 2007-07-30 05:25:38 as ***** along with 1 person and 1 group raiyar steinmetzlab
  • Metabolic footprinting and systems biology: the medium is the message
    Nature Reviews Microbiology, Vol. 3, No. 7. (01 July 2005), pp. 557-565.
    by Douglas B Kell, Marie Brown, Hazel M Davey, Warwick B Dunn, Irena Spasic, Stephen G Oliver
    posted to metabolism systems_biology by alexg on 2007-07-30 05:20:18 as ***** along with 4 people and 1 group bayesian irenas andytseng Borelli dbk-lab
  • Transcriptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway.
    FEBS Lett, Vol. 500, No. 3. (6 July 2001), pp. 169-171.
    by BH ter Kuile, HV Westerhoff
    posted to metabolism systems_biology by alexg on 2007-04-24 08:59:18 as **
  • When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation
    Mol Syst Biol, Vol. 2 (2006)
    by MTAP Kresnowati, WA van Winden, MJH Almering, A Proell, C Ras, TA Knijnenburg, PAS Daran-Lapujade, JT Pronk, JJ Heijnen, JM Daran
    posted to metabolism systems_biology by alexg on 2007-04-24 08:58:15 as ** along with 2 people yyin02 westoll
  • Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.
    J Biol Chem, Vol. 279, No. 10. (5 March 2004), pp. 9125-9138.
    by P Daran-Lapujade, ML Jansen, JM Daran, W van Gulik, JH de Winde, JT Pronk
    posted to metabolism systems_biology by alexg on 2007-04-24 08:57:15 as ** along with 1 person roys
  • Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox.
    Nat Protoc, Vol. 2, No. 3. (2007), pp. 727-738.
    by SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard
    posted to flux_balance_analysis metabolism by alexg on 2007-04-24 07:47:56 as **** along with 2 people jyuh edwardmorrissey
  • The metabolic world of Escherichia coli is not small.
    Proc Natl Acad Sci U S A, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547.
    by M Arita
    posted to metabolism networks systems_biology by alexg on 2006-12-26 02:03:08 as ** along with 9 people and 3 groups hryk camster PeterCollins riomenajang barry tny azuma dylan77 Ema dbk-lab structural_bioinformatics Bioinformatics
  • A joint model of regulatory and metabolic networks
    BMC Bioinformatics, Vol. 7 (04 July 2006), 332.
    by Chen-Hsiang Yeang, Martin Vingron
    posted to metabolism net_paper regulation by alexg on 2006-08-18 01:54:27 as ** along with 2 people cgaray roys
  • Metabolic control analysis in drug discovery and disease.
    Nat Biotechnol, Vol. 20, No. 3. (March 2002), pp. 243-249.
    by M Cascante, LG Boros, B Comin-Anduix, P de Atauri, JJ Centelles, PW Lee
    posted to metabolism by alexg on 2006-06-21 06:06:19 as **
  • Multiple feedback loops are key to a robust dynamic performance of tryptophan regulation in Escherichia coli.
    FEBS Lett, Vol. 563, No. 1-3. (9 April 2004), pp. 234-240.
    by KV Venkatesh, S Bhartiya, A Ruhela
    posted to metabolism net_paper regulation by alexg on 2006-05-22 06:56:25 as ** along with 1 person monod
  • The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states.
    Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 19103-19108.
    by CL Barrett, CD Herring, JL Reed, BO Palsson
    posted to enzyme metabolism net_paper regulation by alexg on 2006-05-22 06:55:33 as ** along with 3 people heliopais madhadron comb
  • Functional cartography of complex metabolic networks
    Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900.
    by Roger Guimera, LAN Luis
    posted to metabolism networks by alexg on 2006-02-06 04:23:53 as ** along with 14 people and 4 groups carlk camster dbk BioGeek Borelli lfriedl balajis eweaver tny wnpx cjeans kdang RobMills Diego_Prada streptomyces dbk-lab kdl Bioinformatics
  • Structural comparison of metabolic networks in selected single cell organisms.
    BMC Bioinformatics, Vol. 6, No. 1. (2005), 8.
    by D Zhu, ZS Qin
    posted to metabolism networks pathways by alexg on 2006-02-06 04:20:03 as ** along with 2 people Borelli tny
  • Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.Coli.
    Bioinformatics, Vol. 21, No. Suppl 2. (1 September 2005), pp. 190-196.
    by E Simão, E Remy, D Thieffry, C Chaouiya
    posted to metabolism net_paper networks pathways by alexg on 2005-12-07 02:14:54 as *****
  • A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by JM Schwartz, M Kanehisa
    posted to metabolism networks pathways by alexg on 2005-12-07 02:13:46 as **
  • FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 261-269.
    by S Klamt, J Stelling, M Ginkel, ED Gilles
    posted to metabolism networks by alexg on 2005-12-06 00:41:33 as read along with 2 people and 2 groups balicea carmaus dIEMoSIRIS MoSi-Rostock
  • Exploring the diversity of complex metabolic networks.
    Bioinformatics (4 January 2005)
    by Vassily Hatzimanikatis, Chunhui Li, Justin A A Ionita, Christopher S S Henry, Matthew D D Jankowski, Linda J J Broadbelt
    posted to metabolism networks by alexg on 2005-12-06 00:41:03 as ** along with 5 people and 1 group greg betainverse kuhn jdiggans shung spliceml
  • Metabolic pathways in the post-genome era.
    Trends Biochem Sci, Vol. 28, No. 5. (May 2003), pp. 250-258.
    by JA Papin, ND Price, SJ Wiback, DA Fell, BO Palsson
    posted to metabolism net_paper pathways by alexg on 2005-12-06 00:40:09 as ** along with 2 people and 1 group camster tny dbk-lab
  • The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks.
    Eur J Biochem, Vol. 271, No. 14. (July 2004), pp. 2905-2922.
    by HG Holzhütter
    posted to flux_balance_analysis metabolism networks by alexg on 2005-12-06 00:39:27 as ** along with 3 people and 1 group JeremyZucker sobolevnrm pmendes baker-group
  • Minimal cut sets in biochemical reaction networks.
    Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 226-234.
    by S Klamt, ED Gilles
    posted to metabolism networks by alexg on 2005-12-06 00:38:57 as ** along with 3 people jiny tmmurali AbnerCYH
  • The connectivity structure, giant strong component and centrality of metabolic networks.
    Bioinformatics, Vol. 19, No. 11. (22 July 2003), pp. 1423-1430.
    by HW Ma, AP Zeng
    posted to metabolism networks by alexg on 2005-12-06 00:38:15 as ** along with 2 people mague gcalda
  • Network-based regulatory pathways analysis.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2056-2066.
    by M Xiong, J Zhao, H Xiong
    posted to metabolism networks by alexg on 2005-12-06 00:37:43 as ** along with 1 person balicea
  • The evolution of connectivity in metabolic networks.
    PLoS Biol, Vol. 3, No. 7. (July 2005), e228.
    by T Pfeiffer, OS Soyer, S Bonhoeffer
    posted to metabolism networks by alexg on 2005-12-06 00:37:01 as *** along with 5 people and 1 group bjorns balicea tny livingthingdan Ema livingthing
  • Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph.
    Bioinformatics, Vol. 20, No. 12. (12 August 2004), pp. 1870-1876.
    by HW Ma, XM Zhao, YJ Yuan, AP Zeng
    posted to metabolism net_paper networks by alexg on 2005-12-06 00:35:54 as *** along with 1 person fishtank
  • Analyzing cellular biochemistry in terms of molecular networks.
    Annu Rev Biochem, Vol. 73 (2004), pp. 1051-1087.
    by Y Xia, H Yu, R Jansen, M Seringhaus, S Baxter, D Greenbaum, H Zhao, M Gerstein
    posted to metabolism networks by alexg on 2005-10-24 15:13:31 as **
  • Constructing an enzyme-centric view of metabolism.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2050-2055.
    by AB Horne, TC Hodgman, HD Spence, AR Dalby
    posted to enzyme metabolism networks by alexg on 2005-10-24 15:12:37 as ** along with 2 people eweaver tny
  • Metabolic networks: enzyme function and metabolite structure
    Current Opinion in Structural Biology, Vol. 14, No. 3. (June 2004), pp. 300-306.
    by Vassily Hatzimanikatis, Chunhui Li, Justin A Ionita, Linda J Broadbelt
    posted to enzyme metabolism networks by alexg on 2005-10-24 15:12:08 as ** along with 3 people kuhn eweaver tny
  • The KEGG resource for deciphering the genome.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Kanehisa, S Goto, S Kawashima, Y Okuno, M Hattori
    posted to database metabolism networks by alexg on 2005-10-24 15:10:31 as ** along with 8 people and 1 group irenas BragilMassoud lfriedl nuke2005 bioinfo wnpx Garamonfok shung kdl
  • Extracting active pathways from gene expression data.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by JP Vert, M Kanehisa
    posted to gene_expression metabolism pathways by alexg on 2005-10-24 15:09:49 as read along with 1 person klo
  • Global organization of metabolic fluxes in the bacterium Escherichia coli.
    Nature, Vol. 427, No. 6977. (26 February 2004), pp. 839-843.
    by E Almaas, B Kovács, T Vicsek, ZN Oltvai, AL Barabási
    posted to flux_balance_analysis metabolism by alexg on 2005-10-24 15:08:59 as ** along with 3 people and 1 group michaelbarton JeremyZucker gcalda MetabolicModeling
  • The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
    posted to metabolism net_paper networks by alexg on 2005-10-24 14:39:38 as ** along with 21 people and 2 groups shikin camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia shung pmendes stefanoallesina dbk-lab kdl
  • Network analysis of metabolic enzyme evolution in Escherichia coli.
    BMC Bioinformatics, Vol. 5 (18 February 2004)
    by S Light, P Kraulis
    posted to enzyme evolution metabolism networks by alexg on 2005-10-24 14:38:59 as ** along with 6 people and 1 group kuhn eweaver tny azuma livingthingdan pekrau livingthing
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