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alexg systems_biology [29 articles]

Recent papers added to alexg library classified by the tag systems_biology. You can also see everyone's systems_biology.
  • Global reconstruction of the human metabolic network based on genomic and bibliomic data.
    Proc Natl Acad Sci U S A, Vol. 104, No. 6. (31 January 2007), pp. 1777-1782.
    by Natalie CC Duarte, Scott AA Becker, Neema Jamshidi, Ines Thiele, Monica LL Mo, Thuy DD Vo, Rohith Srivas, Bernhard OO Palsson
    posted to systems_biology by alexg on 2007-10-01 05:33:03 as ** along with 4 people and 1 group jyuh balajis raiyar noby steinmetzlab
  • Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets
    BMC Systems Biology, Vol. 1, No. 1. (2007), 26.
    by Neema Jamshidi, Bernhard Palsson
    posted to systems_biology by alexg on 2007-10-01 05:32:43 as ** along with 1 person JeremyZucker
  • Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data.
    J Biol Chem, Vol. 282, No. 39. (28 September 2007), pp. 28791-28799.
    by YK Oh, BO Palsson, SM Park, CH Schilling, R Mahadevan
    posted to systems_biology by alexg on 2007-10-01 05:32:28 as ** along with 1 person hryk
  • Systems biology. Tracing life's circuitry.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1646-1649.
    by E Pennisi
    posted to systems_biology by alexg on 2007-08-31 05:05:47 as **** along with 1 person wnpx
  • Bow ties, metabolism and disease
    Trends in Biotechnology, Vol. 22, No. 9. (September 2004), pp. 446-450.
    by Marie Csete, John Doyle
    posted to metabolism systems_biology by alexg on 2007-08-24 06:10:59 as **** along with 1 person and 2 groups rhem1224 TCR_Signaling SysbioMPI-TCells
  • Integration of metabolome data with metabolic networks reveals reporter reactions.
    Mol Syst Biol, Vol. 2 (2006)
    by T Cakir, KR Patil, Z Onsan, KO Ulgen, B Kirdar, J Nielsen
    posted to metabolism systems_biology by alexg on 2007-08-15 09:08:12 as ****
  • Uncovering transcriptional regulation of metabolism by using metabolic network topology.
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2685-2689.
    by KR Patil, J Nielsen
    posted to metabolism systems_biology by alexg on 2007-08-15 09:07:09 as **** along with 1 person and 1 group raiyar steinmetzlab
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to metabolism systems_biology by alexg on 2007-08-06 06:27:02 as ***** along with 8 people and 2 groups alanrw shikin irenas nicklynch dullhunk mhucka raiyar fishtank GeneGo steinmetzlab
  • Current Progress in computational metabolomics.
    Brief Bioinform (11 July 2007)
    by David S S Wishart
    posted to metabolism systems_biology by alexg on 2007-08-06 06:24:46 as **** along with 1 person and 1 group jyuh Bioinformatics
  • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
    Mol Syst Biol, Vol. 3 (26 June 2007), 121.
    by Adam M Feist, Christopher S Henry, Jennifer L Reed, Markus Krummenacker, Andrew R Joyce, Peter D Karp, Linda J Broadbelt, Vassily Hatzimanikatis, Bernhard O Palsson
    posted to flux_balance_analysis systems_biology by alexg on 2007-07-31 07:08:42 as ***** along with 4 people JeremyZucker michaelbarton hryk cjeans
  • Differential metabolic networks unravel the effects of silent plant phenotypes.
    Proc Natl Acad Sci U S A, Vol. 101, No. 20. (18 May 2004), pp. 7809-7814.
    by W Weckwerth, ME Loureiro, K Wenzel, O Fiehn
    posted to metabolism systems_biology by alexg on 2007-07-30 08:09:23 as ***
  • High-throughput metabolic state analysis: the missing link in integrated functional genomics of yeasts.
    Biochem J, Vol. 388, No. Pt 2. (1 June 2005), pp. 669-677.
    by SG Villas-Bôas, JF Moxley, M Akesson, G Stephanopoulos, J Nielsen
    posted to metabolism systems_biology by alexg on 2007-07-30 08:07:53 as ***
  • From genomes to in silico cells via metabolic networks.
    Curr Opin Biotechnol, Vol. 16, No. 3. (June 2005), pp. 350-355.
    by I Borodina, J Nielsen
    posted to metabolism systems_biology by alexg on 2007-07-30 06:47:35 as ***** along with 1 person Ema
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
    posted to metabolism nmr systems_biology by alexg on 2007-07-30 05:25:38 as ***** along with 1 person and 1 group raiyar steinmetzlab
  • Metabolic footprinting and systems biology: the medium is the message
    Nature Reviews Microbiology, Vol. 3, No. 7. (01 July 2005), pp. 557-565.
    by Douglas B Kell, Marie Brown, Hazel M Davey, Warwick B Dunn, Irena Spasic, Stephen G Oliver
    posted to metabolism systems_biology by alexg on 2007-07-30 05:20:18 as ***** along with 4 people and 1 group bayesian irenas andytseng Borelli dbk-lab
  • Effect of dataset selection on the topological interpretation of protein interaction networks.
    BMC Genomics, Vol. 6 (2005)
    by L Hakes, DL Robertson, SG Oliver
    posted to networks systems_biology by alexg on 2007-07-30 05:19:47 as **
  • From genomes to systems: the path with yeast.
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 477-482.
    by SG Oliver
    posted to review systems_biology by alexg on 2007-07-30 05:19:08 as ***** along with 1 person dullhunk
  • Integrative investigation of metabolic and transcriptomic data.
    BMC Bioinformatics, Vol. 7 (2006)
    by P Pir, B Kirdar, A Hayes, ZY Onsan, KO Ulgen, SG Oliver
    posted to systems_biology by alexg on 2007-07-30 05:18:44 as *** along with 1 person kozloyevski
  • Annotation of unknown yeast ORFs by correlation analysis of microarray data and extensive literature searches.
    Yeast, Vol. 23, No. 7. (May 2006), pp. 553-571.
    by P Pir, KO Ulgen, A Hayes, Z Ilsen Onsan, B Kirdar, SG Oliver
    posted to microarray systems_biology by alexg on 2007-07-30 05:18:14 as **
  • Flux balance analysis of a genome-scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains.
    Biotechnol Prog, Vol. 23, No. 2. (r 2007), pp. 320-326.
    by T Cakir, C Efe, D Dikicioglu, A Hortaçsu, B Kirdar, SG Oliver
    posted to flux_balance_analysis systems_biology by alexg on 2007-07-30 05:17:29 as ***
  • Growth control of the eukaryote cell: a systems biology study in yeast
    Journal of Biology, Vol. 6 (30 April 2007), 4.
    by Juan I Castrillo, Leo A Zeef, David C Hoyle, Nianshu Zhang, Andrew Hayes, David CJ Gardner, Michael J Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S Hester, Tom PJ Dunkley, Sarah R Hart, Neil Swainston, Peter Li, Simon J Gaskell, Norman W Paton, Kathryn S Lilley, Douglas B Kell, Stephen G Oliver
    posted to systems_biology by alexg on 2007-07-30 05:16:34 as ***** along with 8 people and 1 group alanrw aalibes dullhunk balabu dylan77 cabbagezs Stew roys EisenLab
  • Transcriptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway.
    FEBS Lett, Vol. 500, No. 3. (6 July 2001), pp. 169-171.
    by BH ter Kuile, HV Westerhoff
    posted to metabolism systems_biology by alexg on 2007-04-24 08:59:18 as **
  • When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation
    Mol Syst Biol, Vol. 2 (2006)
    by MTAP Kresnowati, WA van Winden, MJH Almering, A Proell, C Ras, TA Knijnenburg, PAS Daran-Lapujade, JT Pronk, JJ Heijnen, JM Daran
    posted to metabolism systems_biology by alexg on 2007-04-24 08:58:15 as ** along with 2 people yyin02 westoll
  • Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.
    J Biol Chem, Vol. 279, No. 10. (5 March 2004), pp. 9125-9138.
    by P Daran-Lapujade, ML Jansen, JM Daran, W van Gulik, JH de Winde, JT Pronk
    posted to metabolism systems_biology by alexg on 2007-04-24 08:57:15 as ** along with 1 person roys
  • A reductionist's systems biology: opinion.
    Curr Opin Cell Biol, Vol. 17, No. 1. (February 2005), pp. 9-11.
    by PK Sorger
    posted to systems_biology by alexg on 2007-04-24 07:55:18 as ** along with 3 people and 2 groups eweaver jaycopeland cdppublications SorgerLab CDP
  • Chemical combination effects predict connectivity in biological systems
    Mol Syst Biol, Vol. 3 (27 February 2007), 80.
    by Joseph Lehar, Grant R Zimmermann, Andrew S Krueger, Raymond A Molnar, Jebediah T Ledell, Adrian M Heilbut, Glenn F Short, Leanne C Giusti, Garry P Nolan, Omar A Magid, Margaret S Lee, Alexis A Borisy, Brent R Stockwell, Curtis T Keith
    posted to networks systems_biology by alexg on 2007-04-24 07:49:11 as *** along with 4 people pbellec daed aheilbut jjray
  • The metabolic world of Escherichia coli is not small.
    Proc Natl Acad Sci U S A, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547.
    by M Arita
    posted to metabolism networks systems_biology by alexg on 2006-12-26 02:03:08 as ** along with 9 people and 3 groups hryk camster PeterCollins riomenajang barry tny azuma dylan77 Ema dbk-lab structural_bioinformatics Bioinformatics
  • A systems biology perspective on protein structural dynamics and signal transduction.
    Curr Opin Struct Biol, Vol. 15, No. 1. (February 2005), pp. 23-30.
    by F Rousseau, J Schymkowitz
    posted to allostery protein_structure systems_biology by alexg on 2005-11-28 09:48:47 as ***** along with 6 people lna eweaver dgront choonpeng ruvido jlh64
  • Spontaneous evolution of modularity and network motifs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 39. (20 September 2005), pp. 13773-13778.
    by Nadav Kashtan, Uri Alon
    posted to network_motif networks systems_biology by alexg on 2005-10-24 15:18:46 as ** along with 15 people and 6 groups carlk mcphee marimo monod Borelli i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
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