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aprasad algorithm [14 articles]

Recent papers added to aprasad library classified by the tag algorithm. You can also see everyone's algorithm.
  • Motif Evaluation by Leave-one-out Scoring
    Computational Intelligence and Bioinformatics and Computational Biology, 2006. CIBCB '06. 2006 IEEE Symposium on (2006), pp. 1-7.
    by Audrey Girouard, Noah W Smith, Donna K Slonim
    posted to motif methods algorithm by aprasad on 2008-10-01 16:39:54 as **
  • Exact and heuristic algorithms for the Indel Maximum Likelihood Problem.
    J Comput Biol, Vol. 14, No. 4. (May 2007), pp. 446-461.
    by AB Diallo, V Makarenkov, M Blanchette
    posted to algorithm evolution indel methods model phylogenetics by aprasad on 2007-07-21 21:34:52 as **
  • Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability.
    Mol Biol Evol, Vol. 20, No. 2. (February 2003), pp. 248-254.
    by CJ Douady, F Delsuc, Y Boucher, WF Doolittle, EJ Douzery
    posted to algorithm bayesian methods phylogenetics support by aprasad on 2007-04-23 22:33:25 as **
  • Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics
    PNAS, Vol. 99, No. 25. (10 December 2002), pp. 16138-16143.
    by Yoshiyuki Suzuki, Galina V Glazko, Masatoshi Nei
    posted to algorithm bayesian methods phylogenetics support by aprasad on 2007-04-19 19:27:27 as **
  • Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
    Nature, Vol. 431, No. 7011. (21 October 2004), pp. 980-984.
    by Bryan Kolaczkowski, Joseph W Thornton
    posted to algorithm bayesian likelihood methods parsimony phylogenetics simulation by aprasad on 2007-02-23 20:24:04 as ** along with 1 person tale
  • Detecting non-coding selective pressure in coding regions
    BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007)
    by Hui Chen, Mathieu Blanchette
    posted to algorithm coding non-coding selection by aprasad on 2007-02-12 15:36:00 as ** along with 1 person marenzelleria
  • Combining Bioinformatics and Phylogenetics to Identify Large Sets of Single-Copy Orthologous Genes (COSII) for Comparative, Evolutionary and Systematic Studies: A Test Case in the Euasterid Plant Clade
    Genetics, Vol. 174, No. 3. (1 November 2006), pp. 1407-1420.
    by Feinan Wu, Lukas A Mueller, Dominique Crouzillat, Vincent Petiard, Steven D Tanksley
    posted to ortholog algorithm by aprasad on 2007-01-17 21:01:35 as ** along with 1 person rsandie
  • An approximately unbiased test of phylogenetic tree selection.
    Syst Biol, Vol. 51, No. 3. (June 2002), pp. 492-508.
    by H Shimodaira
    posted to algorithm likelihood methods phylogenetics by aprasad on 2006-09-11 19:38:21 as **
  • Likelihood-based tests of topologies in phylogenetics.
    Syst Biol, Vol. 49, No. 4. (December 2000), pp. 652-670.
    by N Goldman, JP Anderson, AG Rodrigo
    posted to algorithm likelihood methods phylogenetics by aprasad on 2006-09-11 18:33:59 as **
  • Appropriate Likelihood Ratio Tests and Marginal Distributions for Evolutionary Tree Models with Constraints on Parameters
    Mol Biol Evol, Vol. 17, No. 5. (1 May 2000), pp. 798-803.
    by Rissa Ota, Peter J Waddell, Masami Hasegawa, Hidetoshi Shimodaira, Hirohisa Kishino
    posted to algorithm phylogenetics by aprasad on 2006-09-07 17:28:06 as **
  • Partitioning and Combining Data in Phylogenetic Analysis
    Systematic Biology, Vol. 42, No. 3. (1993), pp. 384-397.
    by JJ Bull, John P Huelsenbeck, Clifford W Cunningham, David L Swofford, Peter J Waddell
    posted to algorithm ild parsimony phylogenetics by aprasad on 2006-09-06 20:45:48 as **
  • MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences
    Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3518-3524.
    by Scott Schwartz, Laura Elnitski, Mei Li, Matt Weirauch, Cathy Riemer, Arian Smit, Nisc C Program, Eric D Green, Ross C Hardison, Webb Miller
    posted to algorithm alignment horse pipmaker tools by aprasad on 2006-09-04 20:27:15 as ** along with 1 person wenhan
  • Branch-Length Prior Influences Bayesian Posterior Probability of Phylogeny
    Systematic Biology, Vol. 54, No. 3. (June 2005), pp. 455-470.
    by Ziheng Yang, Bruce Rannala
    posted to algorithm bayesian phylogenetics by aprasad on 2006-09-04 18:54:47 as **
  • Combining phylogenetic and hidden Markov models in biosequence analysis.
    J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 413-428.
    by A Siepel, D Haussler
    posted to algorithm alignment phylogenetics by aprasad on 2006-08-25 14:36:06 as ** along with 1 person bioinfo
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