Recognition-induced conformational changes in protein-protein docking.

@article{citeulike:3042000, abstract = {The ability to predict the three-dimensional structure of a protein complex starting from the isolated binding partners is becoming increasingly relevant. As our understanding of the molecular mechanisms behind protein-protein binding improves, so do the docking methods, however, it remains a challenge to adequately predict the unbound to bound transition. Side-chain flexibility is routinely handled and most docking methods allow for a certain degree of backbone flexibility, but systems undergoing moderate to large conformational changes can at present not correctly be modeled. The docking community is therefore putting an increased effort in the treatment of protein flexibility. Here we present a survey of the existing computational techniques to model protein flexibility in the context of protein-protein docking.}, address = {Center for Structural Biology and Bioinformatics, Dept. of Chemistry, Universit\'{e} Libre de Bruxelles (U.L.B.), Boulevard de Triomphe - CP 263, B-1050 Brussels, Belgium. lensink@scmbb.ulb.ac.ben}, author = {Lensink, M. F. and M\'{e}ndez, R. }, citeulike-article-id = {3042000}, issn = {1873-4316}, journal = {Current pharmaceutical biotechnology}, keywords = {review\_docking}, month = {April}, number = {2}, pages = {77--86}, posted-at = {2008-07-25 09:25:54}, priority = {2}, title = {Recognition-induced conformational changes in protein-protein docking.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/18393864}, volume = {9}, year = {2008} }

TY - JOUR ID - citeulike:3042000 L3 - citeulike-article-id:3042000 TI - Recognition-induced conformational changes in protein-protein docking. JF - Current pharmaceutical biotechnology VL - 9 IS - 2 SP - 77 EP - 86 AD - Center for Structural Biology and Bioinformatics, Dept. of Chemistry, Université Libre de Bruxelles (U.L.B.), Boulevard de Triomphe - CP 263, B-1050 Brussels, Belgium. lensink@scmbb.ulb.ac.ben SN - 1873-4316 N2 - The ability to predict the three-dimensional structure of a protein complex starting from the isolated binding partners is becoming increasingly relevant. As our understanding of the molecular mechanisms behind protein-protein binding improves, so do the docking methods, however, it remains a challenge to adequately predict the unbound to bound transition. Side-chain flexibility is routinely handled and most docking methods allow for a certain degree of backbone flexibility, but systems undergoing moderate to large conformational changes can at present not correctly be modeled. The docking community is therefore putting an increased effort in the treatment of protein flexibility. Here we present a survey of the existing computational techniques to model protein flexibility in the context of protein-protein docking. KW - review_docking AU - Lensink, MF AU - Méndez, R PY - 2008/04// UR - http://view.ncbi.nlm.nih.gov/pubmed/18393864 ER -