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ashaytan library [216 articles]

Статьи, недавно добавленные в библиотеку ashaytan .
  • Thermodynamic Parameters for the Adsorption of Aromatic Hydrocarbon Vapors at the Gas-Water Interface
    Journal of Chemical & Engineering Data, Vol. 47, No. 5. (2002), pp. 1213-1219.
    by S Raja, FS Yaccone, R Ravikrishna, KT Valsaraj
    posted to experiment adsorption by ashaytan on 2008-07-03 13:49:56 as **
  • Accommodation of ethanol, acetone and benzaldehyde by the liquid-vapor interface of water: A molecular dynamics study
    Chemical Physics, Vol. 327, No. 2-3. (11 September 2006), pp. 512-517.
    by Sébastien Canneaux, Jean-Christophe Soetens, Eric Henon, Frédéric Bohr
    posted to simulations pmf by ashaytan on 2008-06-09 21:45:06 as **
  • Hydroxyl Radical at the Air-Water Interface
    Journal of the American Chemical Society, Vol. 126, No. 50. (2004), pp. 16308-16309.
    by M Roeselova, J Vieceli, LX Dang, BC Garrett, DJ Tobias
    posted to pmf by ashaytan on 2008-06-08 18:58:57 as **
  • Free energy of burying hydrophobic residues in the interface between protein subunits
    Proceedings of the National Academy of Sciences, Vol. 95, No. 11. (26 May 1998), pp. 6103-6107.
    by Beatrice Vallone, Adriana E Miele, Paola Vecchini, Emilia Chiancone, Maurizio Brunori
    posted to phd2 by ashaytan on 2008-05-07 15:39:20 as **
  • Solvation energy in protein folding and binding.
    Nature, Vol. 319, No. 6050. (2 1986), pp. 199-203.
    by D Eisenberg, AD McLachlan
    posted to phd2 by ashaytan on 2008-05-07 15:36:02 as ** along with 1 person ruvido
  • Hydrophobicity at Small and Large Length Scales
    Journal of Physical Chemistry B, Vol. 103, No. 22. (1999), pp. 4570-4577.
    by K Lum, D Chandler, JD Weeks
    posted to phd2 by ashaytan on 2008-05-06 12:59:21 as **
  • CONNECTING LOCAL STRUCTURE TO INTERFACE FORMATION: A Molecular Scale van der Waals Theory of Nonuniform Liquids
    Annual Review of Physical Chemistry, Vol. 53, No. 1. (2002), pp. 533-562.
    by John D Weeks
    posted to phd2 by ashaytan on 2008-05-06 12:32:51 as **
  • Liquid-state theory derivation of surface accessible solvation potential models for proteins
    The Journal of Chemical Physics, Vol. 116, No. 23. (2002), pp. 10475-10477.
    by Karl F Freed
    posted to phd2 by ashaytan on 2008-05-06 12:27:15 as **
  • Surface area of globular proteins.
    Journal of molecular biology, Vol. 105, No. 1. (25 July 1976), pp. 13-14.
    by J Janin
    posted to phd2 by ashaytan on 2008-04-30 08:54:00 as **
  • Molecular recognition : Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors
    Journal of Molecular Biology, Vol. 220, No. 2. (20 July 1991), pp. 507-530.
    by SJ Hubbard, SF Campbell, JM Thornton
    posted to phd2 by ashaytan on 2008-04-24 13:35:44 as **
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to phd2 by ashaytan on 2008-04-23 09:19:06 as ** along with 41 people and 5 groups granujilla benwei camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • Kinetic models in protein folding
    (2000)
    by O Bieri, T Kiefhaber
    edited by RH Pain
    posted to phd2 by ashaytan on 2008-04-21 17:58:40 as **
  • Lonely Arginine Seeks Friendly Environment
    J. Gen. Physiol., Vol. 130, No. 2. (30 July 2007), pp. 233-236.
    by Benoit Roux
    posted to phd2 by ashaytan on 2008-04-14 11:03:13 as ** along with 1 person paulschlesinger
  • Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.
    Biochemistry, Vol. 35, No. 16. (23 April 1996), pp. 5109-5124.
    by WC Wimley, TP Creamer, SH White
    posted to experiment phd2 by ashaytan on 2008-04-13 15:33:34 as **
  • Effect of Hydrophobicity of Amino Acids on the Structure of Water
    J. Phys. Chem. B, Vol. 101, No. 35. (28 August 1997), pp. 7022-7026.
    by M Ide, Y Maeda, H Kitano
    posted to phd2 by ashaytan on 2008-04-13 14:24:51 as **
  • Hydrophobic distribution and spatial arrangement of amino acid residues in membrane proteins.
    International journal of peptide and protein research, Vol. 48, No. 5. (November 1996), pp. 452-460.
    by MM Gromiha, PK Ponnuswamy
    posted to phd2 by ashaytan on 2008-04-13 14:21:39 as **
  • Amino Acid Solubility and Hydrophobic Interactions in Proteins: the Work of Charles Tanford
    J. Biol. Chem., Vol. 283, No. 4. (25 January 2008), e3.
    by Nicole Kresge, Robert D Simoni, Robert L Hill
    posted to phd2 by ashaytan on 2008-04-13 14:20:34 as ** along with 1 person paulschlesinger
  • Membrane protein folding and stability: physical principles.
    Annu Rev Biophys Biomol Struct, Vol. 28 (1999), pp. 319-365.
    by SH White, WC Wimley
    posted to phd2 by ashaytan on 2008-04-13 13:53:14 as ** along with 1 person thaliana
  • Partition coefficients and their uses
    Chemical Reviews, Vol. 71, No. 6. (1971), pp. 525-616.
    by Albert Leo, Corwin Hansch, David Elkins
    posted to bibtex-import by ashaytan on 2008-04-13 12:35:04 as **
  • Experimental Measures of Amino Acid Hydrophobicity and the Topology of Transmembrane and Globular Proteins
    J. Gen. Physiol., Vol. 129, No. 5. (30 April 2007), pp. 357-362.
    by Richard Wolfenden
    posted to experiment phd2 by ashaytan on 2008-04-13 12:11:37 as **
  • Amino acid side-chain partition energies and distribution of residues in soluble proteins.
    Biophysical journal, Vol. 47, No. 1. (January 1985), pp. 61-70.
    by HR Guy
    posted to comp phd2 by ashaytan on 2008-04-12 12:11:24 as **
  • Why do protein architectures have boltzmann-like statistics?
    Proteins: Structure, Function, and Genetics, Vol. 23, No. 2. (1995), pp. 142-150.
    by Alexei V Finkelstein, Azat Y Badretdinov, Alexander M Gutin
    posted to phd2 by ashaytan on 2008-04-03 15:22:45 as **
  • Boltzmann-type distribution of side-chain conformation in proteins.
    Protein Sci, Vol. 12, No. 12. (December 2003), pp. 2719-2731.
    by GL Butterfoss, J Hermans
    posted to comp phd2 by ashaytan on 2008-04-03 15:19:09 as ** along with 1 person blackbart
  • Interior and surface of monomeric proteins
    Journal of Molecular Biology, Vol. 196, No. 3. (5 August 1987), pp. 641-656.
    by Susan Miller, Joel Janin, Arthur M Lesk, Cyrus Chothia
    posted to phd2 by ashaytan on 2008-04-03 11:59:33 as **
  • The apolar surface area of amino acids and its empirical correlation with hydrophobic free energy
    Journal of Theoretical Biology, Vol. 111, No. 2. (21 November 1984), pp. 247-260.
    by Cornelius Frommel
    posted to phd2 by ashaytan on 2008-04-03 08:14:41 as **
  • Hydrophobic potential by pairwise surface area sum
    Protein Eng., Vol. 8, No. 5. (1 May 1995), pp. 437-442.
    by N Kurochkina, B Lee
    posted to phd2 by ashaytan on 2008-04-03 08:13:33 as **
  • Nature of Driving Force for Protein Folding: A Result From Analyzing the Statistical Potential
    Physical Review Letters, Vol. 79, No. 4. (28 July 1997), 765.
    by Hao Li, Chao Tang, Ned S Wingreen
    posted to phd2 by ashaytan on 2008-04-01 18:32:51 as **
  • Hydrophobicity of amino acid residues in globular proteins
    Science, Vol. 229, No. 4716. (30 August 1985), pp. 834-838.
    by Gd Rose, Ar Geselowitz, Gj Lesser, Rh Lee, Mh Zehfus
    posted to phd2 by ashaytan on 2008-04-01 18:27:38 as ** along with 1 person medic0747
  • Surface and inside volumes in globular proteins
    Nature, Vol. 277, No. 5696. (February 1979), pp. 491-492.
    by JOEL Janin
    posted to phd2 by ashaytan on 2008-04-01 18:26:01 as **
  • Recognition of transmembrane helices by the endoplasmic reticulum translocon
    Nature, Vol. 433, No. 7024. (27 January 2005), pp. 377-381.
    by Tara Hessa, Hyun Kim, Karl Bihlmaier, Carolina Lundin, Jorrit Boekel, Helena Andersson, Ingmarie Nilsson, Stephen H White, Gunnar v von Heijne
    posted to phd2 by ashaytan on 2008-04-01 18:23:01 as **
  • notes Experimentally determined hydrophobicity scale for proteins at membrane interfaces
    Nat Struct Mol Biol, Vol. 3, No. 10. (October 1996), pp. 842-848.
    by William C Wimley, Stephen H White
    posted to experiment phd2 by ashaytan on 2008-04-01 18:21:43 as ** along with 1 person andreasauerwein
  • Influence of water on protein structure. An analysis of the preferences of amino acid residues for the inside or outside and for specific conformations in a protein molecule.
    Macromolecules, Vol. 11, No. 1. (b 1978), pp. 9-15.
    by DH Wertz, HA Scheraga
    posted to comp phd2 by ashaytan on 2008-04-01 13:13:29 as **
  • Quantifying the accessible surface area of protein residues in their local environment
    Protein Eng., Vol. 15, No. 8. (1 August 2002), pp. 659-667.
    by Uttamkumar Samanta, Ranjit P Bahadur, Pinak Chakrabarti
    posted to comp phd2 by ashaytan on 2008-04-01 13:11:31 as **
  • Protein hydrophobicity: is it the sum of its parts?
    Proteins, Vol. 2, No. 2. (1987), pp. 79-80.
    by GD Rose
    posted to phd2 by ashaytan on 2008-04-01 13:10:29 as **
  • The Solubility of Amino Acids and Two Glycine Peptides in Aqueous Ethanol and Dioxane Solutions. ESTABLISHMENT OF A HYDROPHOBICITY SCALE
    J. Biol. Chem., Vol. 246, No. 7. (10 April 1971), pp. 2211-2217.
    by Yasuhiko Nozaki, Charles Tanford
    posted to experiment phd2 by ashaytan on 2008-04-01 13:08:35 as **
  • Surface, subunit interfaces and interior of oligomeric proteins.
    J Mol Biol, Vol. 204, No. 1. (5 November 1988), pp. 155-164.
    by J Janin, S Miller, C Chothia
    posted to comp phd2 by ashaytan on 2008-04-01 13:07:13 as **
  • Interior and surface of monomeric proteins.
    J Mol Biol, Vol. 196, No. 3. (5 August 1987), pp. 641-656.
    by S Miller, J Janin, AM Lesk, C Chothia
    posted to comp phd2 by ashaytan on 2008-04-01 13:05:41 as **
  • Prediction of protein secondary structure content
    Protein Eng., Vol. 12, No. 12. (1 December 1999), pp. 1041-1050.
    by Wei-Min Liu, Kou-Chen Chou
    posted to comp phd2 by ashaytan on 2008-04-01 13:04:55 as **
  • notes Analysis of accessible surface of residues in proteins.
    Protein Sci, Vol. 12, No. 7. (July 2003), pp. 1406-1417.
    by L Lins, A Thomas, R Brasseur
    posted to comp phd2 by ashaytan on 2008-04-01 13:01:32 as ** along with 1 person mdimmic
  • Hydrophobicity of amino acid subgroups in proteins.
    Proteins, Vol. 8, No. 1. (1990), pp. 6-13.
    by GJ Lesser, GD Rose
    posted to comp phd2 by ashaytan on 2008-04-01 13:00:19 as **
  • Amino acids in AOT reversed micelles. 2. The hydrophobic effect and hydrogen bonding as driving forces for interfacial solubilization
    Journal of Physical Chemistry, Vol. 94, No. 16. (1990), pp. 6411-6420.
    by Epaminondas B Leodidis, Alan T Hatton
    posted to phd2 by ashaytan on 2008-04-01 12:58:49 as **
  • The interpretation of protein structures: estimation of static accessibility.
    J Mol Biol, Vol. 55, No. 3. (14 February 1971), pp. 379-400.
    by B Lee, FM Richards
    posted to phd2 by ashaytan on 2008-04-01 12:55:45 as **
  • Distribution of accessible surfaces of amino acids in globular proteins.
    Proteins, Vol. 2, No. 2. (1987), pp. 153-161.
    by C Lawrence, I Auger, C Mannella
    posted to phd2 by ashaytan on 2008-04-01 12:54:20 as **
  • A simple method for displaying the hydropathic character of a protein.
    J Mol Biol, Vol. 157, No. 1. (5 May 1982), pp. 105-132.
    by J Kyte, RF Doolittle
    posted to phd2 by ashaytan on 2008-04-01 12:53:41 as ** along with 5 people thaliana chad_davis dgront medic0747 netterpaladin
  • Prediction of protein antigenic determinants from amino acid sequences.
    Proc Natl Acad Sci U S A, Vol. 78, No. 6. (June 1981), pp. 3824-3828.
    by TP Hopp, KR Woods
    posted to phd2 by ashaytan on 2008-04-01 12:47:05 as ** along with 1 person leelarcombe
  • Analysis of membrane and surface protein sequences with the hydrophobic moment plot.
    J Mol Biol, Vol. 179, No. 1. (15 October 1984), pp. 125-142.
    by D Eisenberg, E Schwarz, M Komaromy, R Wall
    posted to phd2 by ashaytan on 2008-04-01 12:45:35 as ** along with 1 person thaliana
  • Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins.
    Annu Rev Biophys Biophys Chem, Vol. 15 (1986), pp. 321-353.
    by DM Engelman, TA Steitz, A Goldman
    posted to phd2 by ashaytan on 2008-04-01 12:44:16 as **
  • notes Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins
    Journal of Molecular Biology, Vol. 195, No. 3. (5 June 1987), pp. 659-685.
    by James L Cornette, Kemp B Cease, Hanah Margalit, John L Spouge, Jay A Berzofsky, Charles Delisi
    posted to phd2 by ashaytan on 2008-04-01 12:43:08 as **
  • The dependence of amino acid pair correlations on structural environment
    Proteins: Structure, Function, and Genetics, Vol. 32, No. 2. (1998), pp. 175-189.
    by Adrian P Cootes, Paul MG Curmi, Ross Cunningham, Christine Donnelly, Andrew E Torda
    posted to phd2 by ashaytan on 2008-04-01 12:28:37 as **
  • Hydrophobic bonding and accessible surface area in proteins
    Nature, Vol. 248, No. 5446. (22 March 1974), pp. 338-339.
    by Cyrus Chothia
    posted to comp phd2 by ashaytan on 2008-03-31 13:22:47 as **
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