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austin biochemistry [26 articles]

Recent papers added to austin library classified by the tag biochemistry. You can also see everyone's biochemistry.
  • Replacement of the conserved G.U with a G-C pair at the cleavage site of the Tetrahymena ribozyme decreases binding, reactivity, and fidelity.
    Biochemistry, Vol. 33, No. 46. (22 November 1994), pp. 13856-13863.
    by AM Pyle, S Moran, SA Strobel, T Chapman, DH Turner, TR Cech
    posted to biochemistry ribozyme tetrahymena by austin on 2008-08-27 19:52:17 as read
  • Three metal ions at the active site of the Tetrahymena group I ribozyme.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 22. (26 October 1999), pp. 12299-12304.
    by S Shan, A Yoshida, S Sun, JA Piccirilli, D Herschlag
    posted to biochemistry ribozyme tetrahymena by austin on 2008-08-24 02:45:10 as read
  • Structural specificity conferred by a group I RNA peripheral element.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 29. (19 July 2005), pp. 10176-10181.
    posted to biochemistry folding tetrahymena by austin on 2008-08-24 02:32:48 as read
  • Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites.
    RNA (New York, N.Y.), Vol. 4, No. 5. (May 1998), pp. 530-541.
    posted to biochemistry groupi ribozyme by austin on 2008-08-24 02:31:39 as read
  • Self-assembly of a group I intron active site from its component tertiary structural domains.
    RNA (New York, N.Y.), Vol. 1, No. 1. (March 1995), pp. 36-45.
    by JA Doudna, TR Cech
    posted to biochemistry ribozyme tetrahymena by austin on 2008-08-24 02:30:27 as read
  • Folding problems of the 5' splice site containing the P1 stem of the group I thymidylate synthase intron: substrate binding inhibition in vitro and mis-splicing in vivo.
    The Journal of biological chemistry, Vol. 277, No. 20. (17 May 2002), pp. 17987-17993.
    posted to biochemistry folding groupi ribozyme by austin on 2008-08-22 20:49:22 as read
  • Probing the interplay between the two steps of group I intron splicing: competition of exogenous guanosine with omega G.
    Biochemistry, Vol. 37, No. 51. (22 December 1998), pp. 18056-18063.
    posted to biochemistry ribozyme tetrahymena trans-splicing by austin on 2008-08-21 04:52:51 as read
  • Conformational switches involved in orchestrating the successive steps of group I RNA splicing.
    Biochemistry, Vol. 35, No. 12. (26 March 1996), pp. 3754-3763.
    by BL Golden, TR Cech
    posted to biochemistry groupi ribozyme by austin on 2008-08-21 02:56:41 as read
  • Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 2. Kinetic description of the reaction of an RNA substrate that forms a mismatch at the active site.
    Biochemistry, Vol. 29, No. 44. (6 November 1990), pp. 10172-10180.
    by D Herschlag, TR Cech
    posted to biochemistry ribozyme tetrahymena by austin on 2008-08-21 02:38:37 as read
  • Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site.
    Biochemistry, Vol. 29, No. 44. (6 November 1990), pp. 10159-10171.
    by D Herschlag, TR Cech
    posted to biochemistry ribozyme tetrahymena by austin on 2008-08-21 02:38:15 as read
  • RNA splicing: group I intron crystal structures reveal the basis of splice site selection and metal ion catalysis.
    Current opinion in structural biology, Vol. 16, No. 3. (June 2006), pp. 319-326.
    by MR Stahley, SA Strobel
    posted to biochemistry groupi structure by austin on 2008-08-17 03:44:14 as read
  • Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction.
    Biochemistry, Vol. 40, No. 17. (1 May 2001), pp. 5161-5171.
    posted to biochemistry tetrahymena by austin on 2008-08-17 03:42:00 as read
  • Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice.
    RNA (New York, N.Y.), Vol. 10, No. 10. (October 2004), pp. 1526-1532.
    by SP Koduvayur, SA Woodson
    posted to biochemistry folding tetrahymena by austin on 2008-08-17 03:29:30 as read
  • In vivo facilitation of Tetrahymena group I intron splicing in Escherichia coli pre-ribosomal RNA.
    RNA (New York, N.Y.), Vol. 1, No. 3. (May 1995), pp. 284-292.
    by F Zhang, ES Ramsay, SA Woodson
    posted to biochemistry groupi tetrahymena by austin on 2008-07-21 03:56:29 as read
  • The ability to form full-length intron RNA circles is a general property of nuclear group I introns.
    RNA (New York, N.Y.), Vol. 9, No. 12. (December 2003), pp. 1464-1475.
    posted to biochemistry groupi ribozyme by austin on 2008-07-21 03:28:14 as read
  • The 2'-hydroxyl group of the guanosine nucleophile donates a functionally important hydrogen bond in the Tetrahymena ribozyme reaction
    Biochemistry (24 June 2008)
    by James L Hougland, Raghuvir N Sengupta, Qing Dai, Shirshendu K Deb, Joseph A Piccirilli
    posted to biochemistry groupi splicing tetrahymena by austin on 2008-06-28 23:57:19 as read
  • Thermodynamics and kinetics for base-pair opening in the P1 duplex of the Tetrahymena group I ribozyme.
    Nucleic acids research, Vol. 35, No. 9. (2007), pp. 2965-2974.
    by JH Lee, A Pardi
    posted to biochemistry igs p1 ribozyme tetrahymena by austin on 2008-06-17 04:00:42 as read
  • Mutations at the guanosine-binding site of the Tetrahymena ribozyme also affect site-specific hydrolysis.
    Nucleic acids research, Vol. 20, No. 24. (25 December 1992), pp. 6613-6619.
    by P Legault, D Herschlag, DW Celander, TR Cech
    posted to biochemistry ribozyme tetrahymena by austin on 2008-06-12 21:32:13 as read
  • Requirements of a group I intron for reactions at the 3' splice site.
    J Mol Biol, Vol. 229, No. 3. (5 February 1993), pp. 685-694.
    posted to biochemistry groupi mutagenesis ribozyme tetrahymena by austin on 2008-03-11 01:54:28 as read
  • Mechanisms of covalent self-assembly of the Azoarcus ribozyme from four fragment oligonucleotides
    Nucl. Acids Res. (29 November 2007), gkm1055.
    by Will E Draper, Eric J Hayden, Niles Lehman
    posted to biochemistry groupi mutagenesis ribozyme by austin on 2008-03-07 02:13:05 as read
  • Identification of ribozymes within a ribozyme library that efficiently cleave a long substrate RNA.
    RNA, Vol. 1, No. 6. (August 1995), pp. 598-609.
    by TB Campbell, TR Cech
    posted to biochemistry mutagenesis ribozyme selection tetrahymena by austin on 2008-02-15 23:38:58 as read
  • A preorganized active site in the crystal structure of the Tetrahymena ribozyme
    Science, Vol. 282, No. 5387. (9 October 1998), pp. 259-264.
    by Barbara L Golden, Anne R Gooding, Elaine R Podell, Thomas R Cech
    posted to biochemistry crystal ribozyme structure tetrahymena by austin on 2008-01-02 22:11:05 as read
  • New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme
    Chemistry & Biology, Vol. 3, No. 12. (December 1996), pp. 993-1009.
    by Valerie Lehnert, Luc Jaeger, Francois Michele, Eric Westhof
    posted to biochemistry model mutagenesis ribozyme tetrahymena by austin on 2008-01-02 18:03:25 as read
  • Two universally conserved adenosines of the group I intron that are important for self-splicing but not for core catalytic activity.
    J Biochem, Vol. 115, No. 1. (January 1994), pp. 126-130.
    by KP Williams, DN Fujimoto, T Inoue
    posted to biochemistry catalysis ribozyme by austin on 2008-01-02 04:58:33 as read
  • Communication Between RNA Folding Domains Revealed by Folding of Circularly Permuted Ribozymes
    Journal of Molecular Biology, Vol. 373, No. 1. (12 October 2007), pp. 197-210.
    by Richard A Lease, Tadepalli Adilakshmi, Susan Heilman-Miller, Sarah A Woodson
    posted to biochemistry ribozyme by austin on 2007-12-26 00:26:52 as read
  • Activation of the group I intron ribozymes with their peripheral domains
    (2000), pp. 27-39.
    by Tan Inoue, Yoshiya Ikawa
    edited by Guido Krupp, Rajesh K Gaur
    posted to biochemistry ribozyme by austin on 2007-08-16 21:26:58 as read
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