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azazello library [114 articles]

Статьи, недавно добавленные в библиотеку azazello .
  • The phusion assembler.
    Genome Res, Vol. 13, No. 1. (2003), pp. 81-90.
    by JC Mullikin, Z Ning
    posted to cse by azazello on 2008-07-25 17:54:58 as ** along with 3 people bpb wenhan dmc
  • Large-scale Genome Sequence Processing
    (07 July 2006)
    by Masahiro Kasahara, Shinichi Morishita
    posted to cse by azazello on 2008-07-25 02:29:19 as **
  • The BellKor solution to the Netflix Prize
    by Robert M Bell, Yehuda Koren, Chris Volinsky
    posted to binning by azazello on 2008-06-09 19:33:46 as ** along with 1 person and 1 group zhaobr RecommenderSystem
  • A short introduction to boosting
    (1999)
    by Y Freund, R Schapire
    posted to binning by azazello on 2008-06-09 19:32:00 as ** along with 2 people and 1 group OriginalLurch rogerblake clab
  • Stochastic gradient boosting
    by J Friedman
    posted to binning by azazello on 2008-06-09 19:31:00 as **
  • k-means++: the advantages of careful seeding
    (2007), pp. 1027-1035.
    by David Arthur, Sergei Vassilvitskii
    posted to binning by azazello on 2008-06-09 19:29:52 as **
  • Lessons from the Netflix prize challenge
    SIGKDD Explor. Newsl., Vol. 9, No. 2. (December 2007), pp. 75-79.
    by Robert M Bell, Yehuda Koren
    posted to binning by azazello on 2008-06-09 18:51:40 as ** along with 2 people lfriedl bigbossman
  • Computational identification of putative programmed translational frameshift sites
    Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1046-1053.
    by Atul A Shah, Michael C Giddings, Jasmin B Parvaz, Raymond F Gesteland, John F Atkins, Ivaylo P Ivanov
    posted to frameshift by azazello on 2008-05-11 15:05:02 as **
  • Heuristic approach to deriving models for gene finding.
    Nucleic Acids Res, Vol. 27, No. 19. (1 October 1999), pp. 3911-3920.
    by J Besemer, M Borodovsky
    posted to no-tag by azazello on 2008-04-29 17:45:01 as ** along with 4 people and 2 groups GustavoLacerda alexl indigoviolet wenhan MBLAB EisenLab
  • An Eulerian path approach to DNA fragment assembly.
    Proc Natl Acad Sci U S A, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753.
    by PA Pevzner, H Tang, MS Waterman
    posted to cse by azazello on 2008-04-28 15:43:26 as ** along with 7 people and 2 groups jwhitney brl A_Olympia briann jmeppley AaronDarling nedwards Philosophy_of_Information Blog_and_Wiki_Research
  • A new approach to fragment assembly in DNA sequencing
    (2001), pp. 256-267.
    by Pavel A Pevzner, Haixu Tang, Michael S Waterman
    posted to cse by azazello on 2008-04-28 14:56:04 as **
  • Whole-genome re-sequencing
    Current Opinion in Genetics & Development, Vol. 16, No. 6. (December 2006), pp. 545-552.
    by David R Bentley
    posted to no-tag by azazello on 2008-04-15 21:01:11 as ** along with 4 people and 3 groups kmdaily jo_davies indigoviolet dchughes EisenLab G4ID Genetics-of-Gambling
  • ICDS database: interrupted CoDing sequences in prokaryotic genomes.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by E Perrodou, C Deshayes, J Muller, C Schaeffer, A Van Dorsselaer, R Ripp, O Poch, JM Reyrat, O Lecompte
    posted to frameshift by azazello on 2008-04-11 19:12:09 as ** along with 1 person alexl
  • Metagenomics: Read length matters
    Appl. Environ. Microbiol. (11 January 2008), AEM.02181-07.
    by Eric K Wommack, Jaysheel Bhavsar, Jacques Ravel
    posted to qual by azazello on 2008-03-27 18:29:34 as ** along with 8 people and 2 groups alexl bluto alexisfjdufresne jmeppley kinestetika Thaverkamp skato_toyaku rvgomes Microbial-Ecology microbiology_nijmegen
  • Mauve: multiple alignment of conserved genomic sequence with rearrangements.
    Genome Res, Vol. 14, No. 7. (July 2004), pp. 1394-1403.
    by AC Darling, B Mau, FR Blattner, NT Perna
    posted to qual by azazello on 2008-03-25 13:59:11 as ** along with 6 people and 1 group Neeperando mariakmejia operon catmat AaronDarling leelarcombe gatech-compgenomics
  • Environmental Genome Shotgun Sequencing of the Sargasso Sea
    Science, Vol. 304, No. 5667. (02 April 2004), pp. 66-74.
    by Craig C Venter, Karin Remington, John F Heidelberg, Aaron L Halpern, Doug Rusch, Jonathan A Eisen, Dongying Wu, Ian Paulsen, Karen E Nelson, William Nelson, Derrick E Fouts, Samuel Levy, Anthony H Knap, Michael W Lomas, Ken Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly Baden-Tillson, Cynthia Pfannkoch, Yu-Hui Rogers, Hamilton O Smith
    posted to no-tag by azazello on 2008-03-25 13:51:57 as ** along with 15 people and 1 group pradiptaray vrich mcox knaseanka eoghanharr johanviklund bpb jmeppley balajis eweaver AaronDarling bluto jdelcampo beatrizfernandez wenhan Microbial-Ecology
  • Toward a census of bacteria in soil.
    PLoS Comput Biol, Vol. 2, No. 7. (21 July 2006)
    by PD Schloss, J Handelsman
    posted to qual by azazello on 2008-03-25 13:50:25 as ** along with 2 people and 2 groups mjetten fornstar microbiology_nijmegen anammox
  • Metagenomic Analysis of the Human Distal Gut Microbiome
    Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359.
    by Steven R Gill, Mihai Pop, Robert T Deboy, Paul B Eckburg, Peter J Turnbaugh, Buck S Samuel, Jeffrey I Gordon, David A Relman, Claire M Fraser-Liggett, Karen E Nelson
    posted to qual by azazello on 2008-03-25 13:48:11 as ** along with 15 people and 9 groups Yanno ana dayjm jmeppley dchughes cmm neveaire hcmorton michC bluto beatrizfernandez wenhan xingxu host-bacteria melissa_wos structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID Microbial-Ecology Genetics-of-Gambling
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to qual by azazello on 2008-03-24 17:41:50 as ** along with 10 people and 4 groups jlgreen mjetten sanchezbuelna vrich mcox bluto jmeppley AaronDarling wenhan sgoetz iSEEM Green Lab microbiology_nijmegen anammox
  • Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e82.
    by Jonathan A Eisen
    posted to qual by azazello on 2008-03-24 17:25:24 as ** along with 6 people and 2 groups olympos djkt jmeppley jdelcampo beatrizfernandez xingxu iSEEM Microbial-Ecology
  • Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis.
    Proc Natl Acad Sci U S A, Vol. 105, No. 9. (4 March 2008), pp. 3473-3478.
    by C Schoen, J Blom, H Claus, A Schramm-Glück, P Brandt, T Müller, A Goesmann, B Joseph, S Konietzny, O Kurzai, C Schmitt, T Friedrich, B Linke, U Vogel, M Frosch
    posted to qual by azazello on 2008-03-24 13:38:46 as ** along with 1 person and 1 group martainn gatech-compgenomics
  • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
    Nature, Vol. 450, No. 7169., pp. 560-565.
    by Falk Warnecke, Peter Luginbühl, Natalia Ivanova, Majid Ghassemian, Toby H Richardson, Justin T Stege, Michelle Cayouette, Alice C Mchardy, Gordana Djordjevic, Nahla Aboushadi, Rotem Sorek, Susannah G Tringe, Mircea Podar, Hector G Martin, Victor Kunin, Daniel Dalevi, Julita Madejska, Edward Kirton, Darren Platt, Ernest Szeto, Asaf Salamov, Kerrie Barry, Natalia Mikhailova, Nikos C Kyrpides, Eric G Matson, Elizabeth A Ottesen, Xinning Zhang, Myriam Hernández, Catalina Murillo, Luis G Acosta, Isidore Rigoutsos, Giselle Tamayo, Brian D Green, Cathy Chang, Edward M Rubin, Eric J Mathur, Dan E Robertson, Philip Hugenholtz, Jared R Leadbetter
    posted to qual by azazello on 2008-03-24 04:23:08 as ** along with 4 people and 2 groups jlgreen bluto wenhan carpi iSEEM Green Lab
  • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
    Nat Methods (29 April 2007)
    by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, Harris Shapiro, Eugene Goltsman, Alice C C McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C C Kyrpides
    posted to qual by azazello on 2008-03-24 04:18:54 as ** along with 9 people and 5 groups jlgreen alexl mjetten carlk Yanno oamg jmeppley bluto GustavoLacerda iSEEM Green Lab microbiology_nijmegen Glimcher_Lab Bioinformatics
  • The greedy path-merging algorithm for contig scaffolding
    J. ACM, Vol. 49, No. 5. (September 2002), pp. 603-615.
    by Daniel H Huson, Knut Reinert, Eugene W Myers
    posted to qual by azazello on 2008-03-24 02:17:58 as ** along with 1 person and 1 group tpreeprem gatech-compgenomics
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
    posted to qual by azazello on 2008-03-24 02:17:33 as ** along with 23 people and 5 groups jlgreen kieran101 GustavoLacerda farhat mcox bpb carpi bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem iSEEM Green Lab Microbial-Ecology GIG gatech-compgenomics
  • MEGAN analysis of metagenomic data.
    Genome Res, Vol. 17, No. 3. (March 2007), pp. 377-386.
    by DH Huson, AF Auch, J Qi, SC Schuster
    posted to qual by azazello on 2008-03-21 19:04:02 as ** along with 4 people and 2 groups alexl mjetten carpi wenhan microbiology_nijmegen anammox
  • Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
    Nature Biotechnology, Vol. 24, No. 10. (24 September 2006), pp. 1263-1269.
    by Héctor G Martín, Natalia Ivanova, Victor Kunin, Falk Warnecke, Kerrie W Barry, Alice C Mchardy, Christine Yeates, Shaomei He, Asaf A Salamov, Ernest Szeto, Eileen Dalin, Nik H Putnam, Harris J Shapiro, Jasmyn L Pangilinan, Isidore Rigoutsos, Nikos C Kyrpides, Linda L Blackall, Katherine D Mcmahon, Philip Hugenholtz
    posted to qual by azazello on 2008-03-21 18:22:08 as ** along with 3 people jmeppley rabu wenhan
  • CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads
    ArXiv e-prints, Vol. 708 (August 2007)
    by S Chatterji, I Yamazaki, Z Bai, J Eisen
    posted to qual by azazello on 2008-03-21 17:56:17 as **
  • A general approach to single-nucleotide polymorphism discovery.
    Nat Genet, Vol. 23, No. 4. (December 1999), pp. 452-456.
    by GT Marth, I Korf, MD Yandell, RT Yeh, Z Gu, H Zakeri, NO Stitziel, L Hillier, PY Kwok, WR Gish
    posted to qual by azazello on 2008-03-21 15:37:44 as ** along with 3 people and 1 group farhat gpappas Ayest gatech-compgenomics
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
    posted to qual by azazello on 2008-03-21 15:36:49 as ** along with 5 people tharris iris42 GustavoLacerda dandaman caseybrown
  • De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
    posted to qual by azazello on 2008-03-19 17:08:41 as ** along with 11 people Ema Neeperando brl briann operon timflutre prajlondhe nedwards urgi yoanjacquemin dmc
  • Extending assembly of short DNA sequences to handle error.
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2942-2944.
    by WR Jeck, JA Reinhardt, DA Baltrus, MT Hickenbotham, V Magrini, ER Mardis, JL Dangl, CD Jones
    posted to qual by azazello on 2008-03-19 17:04:31 as ** along with 2 people Neeperando jyuh
  • The fragment assembly string graph.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by EW Myers
    posted to qual by azazello on 2008-03-19 17:03:06 as ** along with 2 people isimpson Neeperando
  • ALLPATHS: De novo assembly of whole-genome shotgun microreads.
    Genome Res (13 March 2008)
    by Jonathan Butler, Iain Maccallum, Michael Kleber, Ilya A A Shlyakhter, Matthew K K Belmonte, Eric S S Lander, Chad Nusbaum, David B B Jaffe
    posted to qual by azazello on 2008-03-18 00:16:44 as ** along with 9 people and 1 group GeeSharpMinor iris42 tharris GustavoLacerda sharpton Neeperando jwhitney stajich hpaces Berkeley Mycology
  • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
    Genome Res, Vol. 17, No. 11. (November 2007), pp. 1697-1706.
    by Juliane C C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer
    posted to qual by azazello on 2008-03-17 23:47:48 as ** along with 8 people and 1 group iris42 jwhitney timflutre stajich ghattem GustavoLacerda niallhaslam flexer Berkeley Mycology
  • Whole-genome sequencing and assembly with high-throughput, short-read technologies.
    PLoS ONE, Vol. 2 (2007)
    by A Sundquist, M Ronaghi, H Tang, P Pevzner, S Batzoglou
    posted to qual by azazello on 2008-03-17 23:47:33 as ** along with 3 people and 1 group iris42 jyuh nedwards gatech-compgenomics
  • De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
    Genome Res (10 March 2008)
    by David Hernandez, Patrice Francois, Laurent Farinelli, Magne Osteras, Jacques Schrenzel
    posted to qual by azazello on 2008-03-17 23:46:07 as ** along with 6 people and 3 groups balicea Neeperando jmeppley stajich Katje iris42 microbiology_nijmegen Berkeley Mycology gatech-compgenomics
  • Assembling millions of short DNA sequences using SSAKE
    Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501.
    by Warren, L Rene, Sutton, G Granger, Jones, JM Steven, Holt, A Robert
    posted to qual by azazello on 2008-03-15 18:46:41 as ** along with 2 people iris42 nmohelli
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to qual by azazello on 2008-03-15 18:24:08 as ** along with 11 people and 7 groups jlgreen mjetten ana nickluscombe michC bluto agg19954 TaqSys Thaverkamp larsjuhljensen rvgomes iSEEM Green Lab microbiology_nijmegen structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology
  • Pyrobayes: an improved base caller for SNP discovery in pyrosequences
    Nature Methods, Vol. 5, No. 2. (13 January 2008), pp. 179-181.
    by Aaron R Quinlan, Donald A Stewart, Michael P Strömberg, Gábor T Marth
    posted to qual by azazello on 2008-03-10 19:24:14 as ** along with 3 people and 1 group jyuh mariakmejia jmeppley gatech-compgenomics
  • Estimating Continuous Distributions in Bayesian Classifiers
    pp. 338-345.
    by George H John, Pat Langley
    posted to cs frameshift by azazello on 2008-02-28 21:02:18 as ** along with 6 people and 2 groups JoSeK garyfeng cdnewbee xiaoyan2006 rsantana meisi ReadingLab VT_DLRL
  • Hawkeye: a visual analytics tool for genome assemblies
    Genome Biology, Vol. 8 (09 March 2007), R34.
    by Michael C Schatz, Adam M Phillippy, Ben Shneiderman, Steven L Salzberg
    posted to qual by azazello on 2008-02-12 23:36:36 as ** along with 2 people and 2 groups Neeperando stajich Berkeley Mycology gatech-compgenomics
  • The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 365-370.
    by B Boeckmann, A Bairoch, R Apweiler, MC Blatter, A Estreicher, E Gasteiger, MJ Martin, K Michoud, C O'Donovan, I Phan, S Pilbout, M Schneider
    posted to no-tag by azazello on 2008-02-03 02:24:37 as ** along with 6 people chrn chad_davis dgront incovoma sgoetz PunkRock
  • Data Mining: Practical Machine Learning Tools and Techniques, Second Edition (Morgan Kaufmann Series in Data Management Systems)
    (08 June 2005)
    by Ian H Witten, Eibe Frank
    posted to no-tag by azazello on 2008-02-03 02:18:36 as ** along with 25 people and 5 groups akastrin eegilbert napvasconcelos soramame_0518 quianominorleo abellogin sb-3000 sammydre balicea sdvillal caporaso AbnerCYH brunomelo dejang mdifranc BastianSpanneberg velasco ezralanglois pprett gmonce fernandohbc scorreia_pro csacca jdu bobychan WAND AI biomedical-nlp RiSE CSBBGraphTheory
  • Projector: automatic contig mapping for gap closure purposes.
    Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003)
    by SA van Hijum, AL Zomer, OP Kuipers, J Kok
    posted to scaffolding by azazello on 2008-01-25 17:13:25 as ** along with 1 group gatech-compgenomics
  • Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by SA van Hijum, AL Zomer, OP Kuipers, J Kok
    posted to qual scaffolding by azazello on 2008-01-25 17:12:53 as ** along with 1 group gatech-compgenomics
  • Accuracy and quality of massively-parallel DNA pyrosequencing
    Genome Biology, Vol. 8 (20 July 2007), R143.
    by Susan M Huse, Julie A Huber, Hilary G Morrison, Mitchell L Sogin, David M Welch
    posted to 454 by azazello on 2008-01-10 05:18:16 as ** along with 7 people and 3 groups Olaf_Ilzins gpappas jmeppley mblwhoi grahamc GustavoLacerda blobbybirdman Bioinformatics ParkinsonLab_at_MaRS gatech-compgenomics
  • Conservation patterns in different functional sequence categories of divergent Drosophila species.
    Genomics, Vol. 88, No. 4. (October 2006), pp. 431-442.
    by D Papatsenko, A Kislyuk, M Levine, I Dubchak
    posted to no-tag by azazello on 2007-12-10 15:18:22 as **
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to no-tag by azazello on 2007-12-03 18:13:24 as ** along with 42 people and 4 groups granujilla newton1234 david_parsons edvin bandrewfox mariakmejia knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
    Nucleic Acids Res, Vol. 29, No. 12. (15 June 2001), pp. 2607-2618.
    by J Besemer, A Lomsadze, M Borodovsky
    posted to no-tag by azazello on 2007-12-03 14:13:41 as ** along with 2 people and 1 group vwchan wenhan beta
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