Bioconductor: open software development for computational biology and bioinformatics.

by: RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, B Ellis, L Gautier, Y Ge, J Gentry, K Hornik, T Hothorn, W Huber, S Iacus, R Irizarry, F Leisch, C Li, M Maechler, AJ Rossini, G Sawitzki, C Smith, G Smyth, L Tierney, JY Yang, J Zhang

Genome Biol, Vol. 5, No. 10. (2004)

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Abstract

The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples.

@article{citeulike:166220, abstract = {The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples.}, address = {Department of Biostatistical Science, Dana-Farber Cancer Institute, 44 Binney St, Boston, MA 02115, USA. rgentlem@jimmy.harvard.edu}, author = {Gentleman, R. C. and Carey, V. J. and Bates, D. M. and Bolstad, B. and Dettling, M. and Dudoit, S. and Ellis, B. and Gautier, L. and Ge, Y. and Gentry, J. and Hornik, K. and Hothorn, T. and Huber, W. and Iacus, S. and Irizarry, R. and Leisch, F. and Li, C. and Maechler, M. and Rossini, A. J. and Sawitzki, G. and Smith, C. and Smyth, G. and Tierney, L. and Yang, J. Y. and Zhang, J. }, citeulike-article-id = {166220}, doi = {http://dx.doi.org/10.1186/gb-2004-5-10-r80}, issn = {1465-6914}, journal = {Genome Biol}, keywords = {bioconductor, statistics}, number = {10}, posted-at = {2008-07-21 17:05:51}, priority = {2}, title = {Bioconductor: open software development for computational biology and bioinformatics.}, url = {http://dx.doi.org/10.1186/gb-2004-5-10-r80}, volume = {5}, year = {2004} }

RIS record

TY - JOUR ID - citeulike:166220 L3 - citeulike-article-id:166220 TI - Bioconductor: open software development for computational biology and bioinformatics. JF - Genome Biol VL - 5 IS - 10 AD - Department of Biostatistical Science, Dana-Farber Cancer Institute, 44 Binney St, Boston, MA 02115, USA. rgentlem@jimmy.harvard.edu SN - 1465-6914 N2 - The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples. KW - bioconductor KW - statistics AU - Gentleman, RC AU - Carey, VJ AU - Bates, DM AU - Bolstad, B AU - Dettling, M AU - Dudoit, S AU - Ellis, B AU - Gautier, L AU - Ge, Y AU - Gentry, J AU - Hornik, K AU - Hothorn, T AU - Huber, W AU - Iacus, S AU - Irizarry, R AU - Leisch, F AU - Li, C AU - Maechler, M AU - Rossini, AJ AU - Sawitzki, G AU - Smith, C AU - Smyth, G AU - Tierney, L AU - Yang, JY AU - Zhang, J PY - 2004/// UR - http://dx.doi.org/10.1186/gb-2004-5-10-r80 ER -

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