Регистрация | Вход в службу | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

blobbybirdman library [382 articles]

Статьи, недавно добавленные в библиотеку blobbybirdman .
  • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.
    PLoS Comput Biol, Vol. 1, No. 6. (November 2005)
    by DH Haft, J Selengut, EF Mongodin, KE Nelson
    posted to prokaryotes genomics crispr by blobbybirdman on 2008-04-29 16:45:13 as **** along with 1 person and 1 group saru Myxo group
  • Combinatorial regulation of genes essential for Myxococcus xanthus development involves a response regulator and a LysR-type regulator
    Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 7969-7974.
    by Poorna Viswanathan, Toshiyuki Ueki, Sumiko Inouye, Lee Kroos
    posted to response-regulators myxobacteria m_xanthus gene-regulation development by blobbybirdman on 2008-04-29 16:43:21 as **** along with 1 group Myxo group
  • Network motifs in the transcriptional regulation network of Escherichia coli
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 64-68.
    by Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon
    posted to e-coli motifs networks transcriptional by blobbybirdman on 2008-02-27 20:47:51 as read along with 10 people and 1 group jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel zibuyu maralena EBI-regulation
  • THE EVOLUTION OF GENETIC REGULATORY SYSTEMS IN BACTERIA
    Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 169-178.
    by Harley H Mcadams, Balaji Srinivasan, Adam P Arkin
    posted to bacteria evolution gene-regulatory-networks by blobbybirdman on 2008-01-26 15:31:34 as ***** along with 1 person and 1 group balajis Myxo group
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
    posted to bacteria gene-regulation orthology transcription-factors by blobbybirdman on 2008-01-26 15:29:10 as ***** along with 6 people and 3 groups dpollard dquest djkt zwang cabbagezs heliopais EisenLab cis-regulatory-evolution Myxo group
  • Maintenance of transposon-free regions throughout vertebrate evolution
    BMC Genomics, Vol. 8 (20 December 2007), 470.
    by Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
    posted to evolution transposons vertebrates by blobbybirdman on 2008-01-24 20:35:49 as *** along with 2 people and 2 groups cisevol idonaldson cis-regulatory-evolution BergmanLab
  • Defining the sequence-recognition profile of DNA-binding molecules
    PNAS, Vol. 103, No. 4. (24 January 2006), pp. 867-872.
    by Christopher L Warren, Natasha C Kratochvil, Karl E Hauschild, Shane Foister, Mary L Brezinski, Peter B Dervan, George N Phillips, Aseem Z Ansari
    posted to dna-binding microarray molecular-biology-techniques transcription-factors by blobbybirdman on 2008-01-24 20:27:11 as **** along with 4 people and 1 group indigoviolet emilyhare samal stsaft EisenLab
  • A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237.
    by Sebastian J Maerkl, Stephen R Quake
    posted to dna-binding microfluidics systems-biology transcription-factors by blobbybirdman on 2008-01-24 20:18:50 as ** along with 8 people and 2 groups brant jjray dpollard emilyhare adepace aswin skoch3 emptyhb EisenLab Koch_Lab
  • Non-additivity in protein-DNA binding.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2254-2263.
    by RA O'Flanagan, G Paillard, R Lavery, AM Sengupta
    posted to binding-site-prediction bioinformatics svm by blobbybirdman on 2008-01-24 20:09:14 as *** along with 1 person and 1 group reidy UH - Computational Biology
  • Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 530-543.
    by Rohit Joshi, Jonathan M Passner, Remo Rohs, Rinku Jain, Alona Sosinsky, Michael A Crickmore, Vinitha Jacob, Aneel K Aggarwal, Barry Honig, Richard S Mann
    posted to binding-site-prediction dna-binding hox transcription-factors by blobbybirdman on 2008-01-24 20:01:55 as **** along with 2 people and 1 group cwbrown oelemento EisenLab
  • The genesis and evolution of homeobox gene clusters
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 881-892.
    by Jordi Garcia-Fernàndez
    posted to development evolution gene-cluster homeobox by blobbybirdman on 2008-01-24 19:59:33 as *** along with 7 people and 2 groups brant balicea emilyhare nickluscombe BioMaxi timflutre blackm0k EisenLab EBI-regulation
  • Mining of putative cis-acting elements for chromatin mediated regulation of Hox genes in mammals by in-silico analysis.
    J Exp Zoolog B Mol Dev Evol (14 March 2007)
    by Hemant Bengani, Mythily Ganapathi, Gajinder Pal P Singh, Vani Brahmachari
    posted to bioinformatics chromatin gene-regulation hox sequence-analysis by blobbybirdman on 2008-01-24 19:58:16 as *** along with 1 person and 1 group dpollard EisenLab
  • Hox transcription factors and their elusive mammalian gene targets
    Heredity, Vol. aop, No. current.
    by T Svingen, KF Tonissen,
    posted to binding-site-prediction dna-binding hox transcription-factors by blobbybirdman on 2008-01-24 19:45:50 as read along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex
    Genome Res., Vol. 15, No. 5. (1 May 2005), pp. 692-700.
    by Barbara Negre, Sonia Casillas, Magali Suzanne, Ernesto Sanchez-Herrero, Michael Akam, Michael Nefedov, Antonio Barbadilla, Pieter de Jong, Alfredo Ruiz
    posted to drosophila evolution evolutionary-comparision hox by blobbybirdman on 2008-01-24 18:30:15 as *** along with 1 person elzodw
  • Animal Evolution: When Did the `Hox System' Arise?
    Current Biology, Vol. 16, No. 14. (25 July 2006), pp. R546-R548.
    by Chris T Amemiya, Gunter P Wagner
    posted to development evolution evolutionary-comparision hox by blobbybirdman on 2008-01-24 17:34:05 as **** along with 1 person BioMaxi
  • Genomic evolution of Hox gene clusters.
    Science, Vol. 313, No. 5795. (29 September 2006), pp. 1918-1922.
    by D Lemons, W McGinnis
    posted to evolution gene-cluster hox rna-interference by blobbybirdman on 2008-01-24 17:32:08 as **** along with 4 people and 1 group nsamways tardigrade mtagaya adepace EisenLab
  • Comparative analysis of Hox downstream genes in Drosophila
    Development, Vol. 134, No. 2. (15 January 2007), pp. 381-392.
    by Stefanie D Hueber, Daniela Bezdan, Stefan R Henz, Martina Blank, Haijia Wu, Ingrid Lohmann
    posted to drosophila gene-regulation gene-regulatory-networks hox by blobbybirdman on 2008-01-24 17:19:02 as *** along with 2 people and 1 group emilyhare bezdan EisenLab
  • HOM-C evolution in Drosophila: is there a need for Hox gene clustering?
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Barbara Negre, Alfredo Ruiz
    posted to drosophila evolution gene-cluster hox by blobbybirdman on 2008-01-24 17:11:23 as ** along with 2 people and 1 group indigoviolet emilyhare EisenLab
  • Kinetics of Protein-DNA Interaction: Facilitated Target Location in Sequence-Dependent Potential
    Biophys. J., Vol. 87, No. 6. (1 December 2004), pp. 4021-4035.
    by Michael Slutsky, Leonid A Mirny
    posted to dna-binding kinetics by blobbybirdman on 2008-01-24 16:45:46 as ** along with 1 group Myxo group
  • Predicting prokaryotic ecological niches using genome sequence analysis.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by G Suen, BS Goldman, RD Welch
    posted to ecological-niches genomics prokaryotes sequence-analysis by blobbybirdman on 2008-01-24 16:30:32 as **** along with 3 people and 2 groups jdelcampo Thaverkamp kroos Microbial-Ecology Myxo group
  • Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to annotation evolutionary-comparision genome by blobbybirdman on 2008-01-24 16:28:32 as **** along with 10 people and 1 group operon setar tmmurali pggm aprasad balajis nuke2005 lyongu nedwards kroos Myxo group
  • Complete genome sequence of the myxobacterium Sorangium cellulosum
    Nature Biotechnology, Vol. 25, No. 11. (28 October 2007), pp. 1281-1289.
    by Susanne Schneiker, Olena Perlova, Olaf Kaiser, Klaus Gerth, Aysel Alici, Matthias O Altmeyer, Daniela Bartels, Thomas Bekel, Stefan Beyer, Edna Bode, Helge B Bode, Christoph J Bolten, Jomuna V Choudhuri, Sabrina Doss, Yasser A Elnakady, Bettina Frank, Lars Gaigalat, Alexander Goesmann, Carolin Groeger, Frank Gross, Lars Jelsbak, Lotte Jelsbak, Jörn Kalinowski, Carsten Kegler, Tina Knauber, Sebastian Konietzny, Maren Kopp, Lutz Krause, Daniel Krug, Bukhard Linke, Taifo Mahmud, Rosa Martinez-Arias, Alice C Mchardy, Michelle Merai, Folker Meyer, Sascha Mormann, Jose Muñoz-Dorado, Juana Perez, Silke Pradella, Shwan Rachid, Günter Raddatz, Frank Rosenau, Christian Rückert, Florenz Sasse, Maren Scharfe, Stephan C Schuster, Garret Suen, Anke Treuner-Lange, Gregory J Velicer, Frank-Jörg Vorhölter, Kira J Weissman, Roy D Welch, Silke C Wenzel, David E Whitworth, Susanne Wilhelm, Christoph Wittmann, Helmut Blöcker, Alfred Pühler, Rolf Müller
    posted to genome myxobacteria s-cellulosum by blobbybirdman on 2008-01-24 16:27:20 as ** along with 3 people and 1 group neils zwang kroos Myxo group
  • Bacterial response regulators: versatile regulatory strategies from common domains
    Trends in Biochemical Sciences, Vol. 32, No. 5. (May 2007), pp. 225-234.
    by Rong Gao, Timothy R Mack, Ann M Stock
    posted to bacteria gene-regulation response-regulators by blobbybirdman on 2008-01-24 16:26:13 as **** along with 1 person and 1 group kroos Myxo group
  • MazF, an mRNA Interferase, Mediates Programmed Cell Death during Multicellular Myxococcus Development.
    Cell, Vol. 132, No. 1. (11 January 2008), pp. 55-66.
    by H Nariya, M Inouye
    posted to gene-regulation mrna-interference myxobacteria by blobbybirdman on 2008-01-24 16:24:16 as **** along with 1 person and 1 group kroos Myxo group
  • Understanding of bat wing evolution takes flight
    Genes Dev., Vol. 22, No. 2. (15 January 2008), pp. 121-124.
    by Kimberly L Cooper, Clifford J Tabin
    posted to development evolution genetics by blobbybirdman on 2008-01-22 11:43:36 as ***** along with 1 group cis-regulatory-evolution
  • Regulation of the Myxococcus xanthus C-Signal-Dependent Omega4400 Promoter by the Essential Developmental Protein FruA
    J. Bacteriol., Vol. 188, No. 14. (15 July 2006), pp. 5167-5176.
    by Deborah R Yoder-Himes, Lee Kroos
    posted to cis-regulatory-elements development gene-expression molecular-biology-techniques mxyococcus-xanthus by blobbybirdman on 2008-01-22 02:55:56 as read along with 1 group Myxo group
  • Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization
    Genome Biology, Vol. 6, No. 11. (2005)
    by Francis Gibbons, Markus Proft, Kevin Struhl, Frederick Roth
    posted to bioinformatics chip cis-regulatory-elements by blobbybirdman on 2008-01-17 20:39:54 as ** along with 1 group Myxo group
  • Evidence for the Adaptive Evolution of Mutation Rates
    Cell, Vol. 101, No. 6. (9 June 2000), pp. 581-584.
    by David Metzgar, Christopher Wills
    posted to evolution genomics mutation-rates by blobbybirdman on 2007-10-29 16:49:01 as ***** along with 1 person and 1 group rebeccamancy ColDyn
  • Mutation rates in mammalian genomes
    Proceedings of the National Academy of Sciences, Vol. 99, No. 2. (22 January 2002), pp. 803-808.
    by Sudhir Kumar, Sankar Subramanian
    posted to evolution genomics mutation-rates by blobbybirdman on 2007-10-29 16:47:11 as read along with 2 people lesander bandrewfox
  • Noncoding RNA genes.
    Curr Opin Genet Dev, Vol. 9, No. 6. (December 1999), pp. 695-699.
    by SR Eddy
    posted to mirna review by blobbybirdman on 2007-10-16 19:45:55 as **** along with 5 people and 3 groups evaf marcius arcticrasta mtagaya cmm FAB-lab BioinfoCIPF SGU-CIPF
  • Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray
    Genome Res. (4 September 2007), gr.6611807.
    by Housheng He, Jie Wang, Tao Liu, Shirley X Liu, Tiantian Li, Yunfei Wang, Zuwei Qian, Haixia Zheng, Xiaopeng Zhu, Tao Wu, Baochen Shi, Wei Deng, Wei Zhou, Geir Skogerbo, Runsheng Chen
    posted to c_elegans genomics microarray mirna by blobbybirdman on 2007-10-16 19:45:10 as **** along with 2 people cabbagezs xingxu
  • A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e126.
    by Zizhen Yao, Jeffrey Barrick, Zasha Weinberg, Shane Neph, Ronald Breaker, Martin Tompa, Walter L Ruzzo
    posted to algorithms bioinformatics genomics mirna prokaryotes by blobbybirdman on 2007-10-16 19:42:47 as **** along with 4 people sebastien_vigneau zwang lp2 cabbagezs
  • Comparative genomics at the vertebrate extremes.
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465.
    by D Boffelli, MA Nobrega, EM Rubin
    posted to evolutionary-comparisons genomics vertebrates by blobbybirdman on 2007-10-16 17:26:51 as **** along with 2 people olympos emptyhb
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to evolutionary-comparisons genomics multiple-alignment by blobbybirdman on 2007-10-16 17:10:30 as ***** along with 12 people and 5 groups karbak barry ujh alexisgallagher bpb aprasad balicea dchughes djkt sujaikumar cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
    Nature, Vol. 440, No. 7087., pp. 1050-1053.
    by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, Victoria A Kassner, Thomas M Williams, Shu-Dan Yeh, John R True, Sean B Carroll
    posted to cis-regulatory-elements development evolution gene-regulation by blobbybirdman on 2007-10-16 15:10:13 as **** along with 8 people and 1 group RMGraze dpollard balicea tny adepace ranb Garamonfok emptyhb EisenLab
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to evolution genomics by blobbybirdman on 2007-10-16 15:08:51 as **** along with 7 people and 2 groups mcphee dpollard dchughes djkt biomcgary hevol kjlipin EisenLab cis-regulatory-evolution
  • Colloquium Papers: Emerging principles of regulatory evolution.
    Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8605-8612.
    by B Prud'homme, N Gompel, SB Carroll
    posted to cis-regulatory-elements development evolution gene-regulation gene-regulatory-networks morphogenesis by blobbybirdman on 2007-10-16 15:07:30 as **** along with 3 people and 2 groups dpollard cisevol emptyhb EisenLab cis-regulatory-evolution
  • The regulatory content of intergenic DNA shapes genome architecture.
    Genome Biol, Vol. 5, No. 4. (2004)
    by CE Nelson, BM Hersh, SB Carroll
    posted to cis-regulatory-elements evolution genomics non-coding-dna by blobbybirdman on 2007-10-16 15:05:49 as *** along with 4 people and 3 groups dpollard madhadron elzodw cisevol EisenLab cis-regulatory-evolution BergmanLab
  • Mining ChIP-chip data for transcription factor and cofactor binding sites.
    Bioinformatics, Vol. 21 Suppl 1 (June 2005)
    by AD Smith, P Sumazin, D Das, MQ Zhang
    posted to algorithms binding-site-prediction chip-chip gene-expression h_sapiens by blobbybirdman on 2007-10-16 12:33:28 as read along with 2 people dquest Ao_Li2007
  • Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans.
    Dev Cell, Vol. 6, No. 6. (June 2004), pp. 757-770.
    by AS Wenick, O Hobert
    posted to c-elegans cis-regulatory-elements gene-battery gene-regulation non-coding-dna by blobbybirdman on 2007-10-15 13:04:18 as read along with 2 people and 2 groups ana maximilianh structural_bioinformatics Bioinformatics
  • notes Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to cis-regulatory-elements evolution molecular-biology-techniques non-coding-dna by blobbybirdman on 2007-10-15 13:00:50 as read along with 4 people and 3 groups emptyhb brant mimulus_99 cisevol UH - Computational Biology cis-regulatory-evolution Myxo group
  • A regulatory code for neurogenic gene expression in the Drosophila embryo.
    Development, Vol. 131, No. 10. (May 2004), pp. 2387-2394.
    by M Markstein, R Zinzen, P Markstein, KP Yee, A Erives, A Stathopoulos, M Levine
    posted to binding-site-prediction cis-regulatory-elements drosophila by blobbybirdman on 2007-10-15 12:57:18 as ** along with 1 person dquest
  • An evolutionary constraint: Strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules
    Proceedings of the National Academy of Sciences, Vol. 102, No. 33. (16 August 2005), pp. 11769-11774.
    by Andrew R Cameron, Suk H Chow, Kevin Berney, Tsz-Yeung Chiu, Qiu-Autumn Yuan, Alexander Kramer, Argelia Helguero, Andrew Ransick, Mirong Yun, Eric H Davidson
    posted to cis-regulatory-elements evolution evolutionary-comparison non-coding-dna by blobbybirdman on 2007-10-15 12:53:52 as **** along with 2 people and 1 group cisevol emptyhb cis-regulatory-evolution
  • Functional Analysis of Chicken Sox2 Enhancers Highlights an Array of Diverse Regulatory Elements that Are Conserved in Mammals
    Developmental Cell, Vol. 4, No. 4. (April 2003), pp. 509-519.
    by Masanori Uchikawa, Yoshiko Ishida, Tatsuya Takemoto, Yusuke Kamachi, Hisato Kondoh
    posted to chicken cis-regulatory-elements evolutionary-comparison mammals by blobbybirdman on 2007-10-15 12:49:57 as *****
  • Combinatorial epigenetics, "junk DNA", and the evolution of complex organisms.
    Gene, Vol. 390, No. 1-2. (1 April 2007), pp. 232-242.
    by E Zuckerkandl, G Cavalli
    posted to epigenetics evolution gene-regulation non-coding-dna by blobbybirdman on 2007-10-14 11:55:32 as **** along with 2 people and 1 group margaritis cisevol cis-regulatory-evolution
  • Scanning Human Gene Deserts for Long-Range Enhancers
    Science, Vol. 302, No. 5644. (17 October 2003), 413.
    by Marcelo A Nobrega, Ivan Ovcharenko, Veena Afzal, Edward M Rubin
    posted to evolutionary-comparisons non-coding-dna by blobbybirdman on 2007-10-13 08:28:53 as **** along with 4 people djkt elzodw maximilianh heliopais
  • notes Megabase deletions of gene deserts result in viable mice.
    Nature, Vol. 431, No. 7011. (21 October 2004), pp. 988-993.
    by MA Nóbrega, Y Zhu, I Plajzer-Frick, V Afzal, EM Rubin
    posted to molecular-biology-techniques mouse non-coding-dna by blobbybirdman on 2007-10-13 08:05:08 as read along with 3 people and 2 groups ccots elzodw Stew EisenLab UH - Computational Biology
  • Discovering DNA regulatory elements with bacteria
    Nature Biotechnology, Vol. 23, No. 8., pp. 942-944.
    by Martha L Bulyk
    posted to bacterial binding-site-prediction by blobbybirdman on 2007-10-11 15:25:41 as ***** along with 1 person yevishere
  • DNA microarray technologies for measuring protein-DNA interactions
    Current Opinion in Biotechnology, Vol. 17, No. 4. (August 2006), pp. 422-430.
    by Martha L Bulyk
    posted to binding-site-prediction chip-chip microarray by blobbybirdman on 2007-10-11 15:23:49 as ***** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to binding-site-prediction chip-chip hmm integration by blobbybirdman on 2007-10-11 14:49:26 as **** along with 7 people and 2 groups xingxu miguel tuck eckart_bindewald djkt SeungjoonOh inesdesantiago Bioinformatics UH - Computational Biology
    • Вы можете ссылаться на эту страницу по адресу: http://www.citeulike.org/user/blobbybirdman

    Result page: 1 2 3 4 5 6 7 8 Next RIS BibTeX RSS