Регистрация | Вход в службу | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

blobbybirdman base [53 articles]

Recent papers added to blobbybirdman library classified by the tag base. You can also see everyone's base.
  • Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics
    J Mol Biol, Vol. 338, No. 2. (2004), pp. 207-15.
    by A Sandelin, WW Wasserman
    posted to algorithms alignment animals base binding biology computational conformation data factorschemistryclassificationgeneticsmetabolism humans internet mice molecular protein sequence sites transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:34 as **
  • Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA
    In Silico Biol, Vol. 1, No. 1. (1998), pp. 21-8.
    by E Roulet, I Fisch, T Junier, P Bucher, N Mermod
    posted to algorithms base binding biological computer dnageneticsmetabolism factorsmetabolism govt humans in models non-us research sequence simulation sitesgenetics software support transcription vitro bibtex-import by blobbybirdman on 2007-10-09 17:56:34 as **
  • High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites
    Nat Biotechnol, Vol. 20, No. 8. (2002), pp. 831-5.
    by E Roulet, S Busso, AA Camargo, AJ Simpson, N Mermod, P Bucher
    posted to base binding biological biologymethods ccaat-enhancer-binding computational computer consensus dna-binding dnageneticsmetabolism elementsgenetics expression factorsmetabolism gene genome genomicsmethods govt ligands models non-us protein proteinsmetabolism regulation research response sequence sequencegenetics simulation sites specificity substrate support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:34 as **
  • Transcriptional enhancer activity of hr5 requires dual-palindrome half sites that mediate binding of a dimeric form of the baculovirus transregulator IE1
    J Virol, Vol. 69, No. 9. (1995), pp. 5368-75.
    by SM Rodems, PD Friesen
    posted to animals base binding cell chain competitive data dna dna-binding elements enhancer expression gene genetics govt immediate-early line molecular nucleopolyhedrovirusgeneticsmetabolism nucleusmetabolism phs plasmids polymerase primers probes promoter proteins proteinschemistrymetabolism reaction regions regulation research sequence sites spodoptera support trans-activation trans-activatorschemistrymetabolism us viral viralmetabolism bibtex-import by blobbybirdman on 2007-10-09 17:56:33 as **
  • MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data
    Nucleic Acids Res, Vol. 23, No. 23. (1995), pp. 4878-84.
    by K Quandt, K Frech, H Karas, E Wingender, T Werner
    posted to analysismethods base consensus conserved data govt molecular non-us sequence software support bibtex-import by blobbybirdman on 2007-10-09 17:56:32 as **
  • Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins
    Bioinformatics, Vol. 15, No. 7-8. (1999), pp. 687-703.
    by MP Ponomarenko, JV Ponomarenko, AS Frolov, NL Podkolodny, LK Savinkova, NA Kolchanov, GC Overton
    posted to acid algorithms animals base binding box chemistry computer conformation data databases dnachemistrygeneticsmetabolism factorsgeneticsmetabolism factual govt human molecular mutation myogenic non-us nucleic phs physical proteinsmetabolism regulatory sequence sitesgenetics support systems tata us bibtex-import by blobbybirdman on 2007-10-09 17:56:31 as **
  • A sensitive method for the determination of protein-DNA binding specificities
    Nucleic Acids Res, Vol. 18, No. 21. (1990), pp. 6197-204.
    by R Pollock, R Treisman
    posted to and animals base binding chain data dna-binding factor indicators molecular nuclear oligonucleotide plasmids polymerase probes proteinsmetabolism reactionmethods reagents response reticulocytesmetabolism sequence serum sites specificity substrate bibtex-import by blobbybirdman on 2007-10-09 17:56:31 as **
  • Design superiority of palindromic DNA sites for site-specific recognition of proteins: tests using protein stitchery
    Proc Natl Acad Sci U S A, Vol. 90, No. 11. (1993), pp. 4892-6.
    by C Park, JL Campbell, 3rd
    posted to acid amino base binding comparative conformation data dna-binding dnageneticsmetabolism gene genes govt homology jun leucine macromolecular models molecular non-phs non-us nucleic oligodeoxyribonucleotideschemical oncogene p65gag-jungeneticsmetabolism peptideschemical protein proteinsgeneticsmetabolism rearrangement research secondary sequence sites structural structure study substances support synthesismetabolism us zippersgeneticsphysiology bibtex-import by blobbybirdman on 2007-10-09 17:56:31 as **
  • Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers
    Genome Res, Vol. 12, No. 3. (2002), pp. 470-81.
    by DA Papatsenko, VJ Makeev, AP Lifanov, M Regnier, AG Nazina, C Desplan
    posted to acidgenetics algorithms animals bacterial base binding chromosome coli comparative data developmentalgenetics dna-binding drosophila elements enhancer escherichia expression factors familygenetics gene genes geneticsgenetics govt homeodomain insectgenetics mappingmethodsstatistics melanogastergenetics molecular multigene non-phs non-us nucleic numerical phs proteins proteinsgenetics protozoan regulation regulatory repeat research sequence sequences sequencesgenetics sitesgenetics structural study support tandem transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:30 as **
  • A powerful non-homology method for the prediction of operons in prokaryotes
    Bioinformatics, Vol. 18 Suppl 1 (2002), pp. S329-36.
    by Moreno G Hagelsieb, Collado J Vides
    posted to acid algorithms amino analysis bacteriagenetics bacterial bacterialgenetics base cells chromosome comparative data dnamethods expression factorsgenetics gene genome govt homology mappingmethods molecular non-us operongenetics profilingmethods prokaryotic regulation research sequence study support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:30 as **
  • Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes
    Nucleic Acids Res, Vol. 29, No. 3. (2001), pp. 774-82.
    by L Mccue, W Thompson, C Carmack, MP Ryan, JS Liu, V Derbyshire, CE Lawrence
    posted to acid alignment bacterial bacterialgenetics bacterialgeneticsmetabolism base binding coligenetics databases dna escherichia factorsmetabolism factual gammaproteobacteriagenetics genes genome govt homology nucleic phs phylogeny protein sequence sitesgenetics support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:29 as **
  • A regulatory code for neurogenic gene expression in the Drosophila embryo
    Development, Vol. 131, No. 10. (2004), pp. 2387-94.
    by M Markstein, R Zinzen, P Markstein, KP Yee, A Erives, A Stathopoulos, M Levine
    posted to animals anophelesgenetics base chain cloning data developmentalgenetics drosophila ectodermphysiology elements embryo enhancer expression factorsgenetics gene geneticsgenetics govt male melanogasterembryologygenetics mesodermphysiology molecular mutagenesis nervous nonmammalianphysiology phs polymerase proteinsgenetics reaction regulation regulationgenetics repressor research sequence support systemembryology transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (2002), pp. 763-8.
    by M Markstein, P Markstein, V Markstein, MS Levine
    posted to animals base binding dnageneticsmetabolism drosophila drosophilaembryologygeneticsmetabolism factors family female genes genetically genome govt homeodomain hybridization in insect lac male modified multigene nuclear operon phosphoproteinsmetabolism phs proteins proteinsgenetics proteinsmetabolism repressor research sequence sitesgenetics situ support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • rVista for comparative sequence-based discovery of functional transcription factor binding sites
    Genome Res, Vol. 12, No. 5. (2002), pp. 832-9.
    by GG Loots, I Ovcharenko, L Pachter, I Dubchak, EM Rubin
    posted to animals base binding biologymethods comparative computational cytokineschemistrygenetics factorschemistrygenetics familygenetics geneticsgenetics govt human mice multigene non-phs phs promoter regions sequencegenetics sitesgenetics software study support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • Definition and prediction of the full range of transcription factor binding sites--the hepatocyte nuclear factor 1 dimeric site
    Nucleic Acids Res, Vol. 30, No. 17. (2002), pp. 3809-17.
    by J Locker, D Ghosh, PV Luc, J Zheng
    posted to algorithms assay base binding competitive dna-binding electrophoretic factorsgeneticsmetabolism govt mobility nuclear oligonucleotidesgeneticsmetabolism phs protein proteins research sequence shift sitesgenetics support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:27 as **
  • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    Nat Biotechnol, Vol. 20, No. 8. (2002), pp. 835-9.
    by XS Liu, DL Brutlag, JS Liu
    posted to algorithms analysismethods and array base binding biologymethods cerevisiae cerevisiaegenetics chromatingeneticsmetabolism computational dna-binding dnageneticsmetabolism elementsgenetics expression factors factorsmetabolism fungalgenetics gene genes govt internet non-phs oligonucleotide phs precipitin protein proteinsmetabolism regulation response saccharomyces sensitivity sequence sites software specificity support telomere-binding telomeregeneticsmetabolism testsmethods time transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:27 as **
  • BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    Pac Symp Biocomput (2001), pp. 127-38.
    by X Liu, DL Brutlag, JS Liu
    posted to alignmentstatistics amp analysisstatistics array bacillus base binding box cerevisiaegeneticsmetabolism chains coligeneticsmetabolism conserved cyclic data dnageneticsmetabolism escherichia expression gene genes genetic govt gtp-binding markov models non-phs non-us numerical oligonucleotide phs profilingstatistics proteinmetabolism proteinsmetabolism rap1 receptor regulator saccharomyces sequence sites software subtilisgeneticsmetabolism support tata us bibtex-import by blobbybirdman on 2007-10-09 17:56:27 as **
  • Identification of the binding sites of regulatory proteins in bacterial genomes
    Proc Natl Acad Sci U S A, Vol. 99, No. 18. (2002), pp. 11772-7.
    by H Li, V Rhodius, C Gross, ED Siggia
    posted to algorithms bacterial base binding dna factorsmetabolism genome govt non-phs non-us phs proteinsmetabolism research sequence sites support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:26 as **
  • An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences
    Proteins, Vol. 7, No. 1. (1990), pp. 41-51.
    by CE Lawrence, AA Reilly
    posted to acid algorithms ampgeneticsmetabolism base binding coligenetics conformation cyclic data dna-binding escherichia information molecular nucleic proteinsgenetics receptors sequence sites statistics systems bibtex-import by blobbybirdman on 2007-10-09 17:56:26 as **
  • Diversity and specificity in transcriptional regulation: the benefits of heterotypic dimerization
    Trends Biochem Sci, Vol. 16, No. 11. (1991), pp. 417-22.
    by P Lamb, SL Mcknight
    posted to acid amino animals base data dna-binding expression gene genetic molecular proteinsgenetics regulation sequence transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:26 as **
  • Transcription Regulatory Regions Database (TRRD):its status in 1999
    Nucleic Acids Res, Vol. 27, No. 1. (1999), pp. 303-6.
    by NA Kolchanov, EA Ananko, OA Podkolodnaya, EV Ignatieva, IL Stepanenko, Kel OV Margoulis, AE Kel, TI Merkulova, TN Goryachkovskaya, TV Busygina, FA Kolpakov, NL Podkolodny, AN Naumochkin, AG Romashchenko
    posted to acidgenetics and animals base binding cell cells databases elements elementsgenetics enhancer eukaryotic expression factorsgenetics factualtrends gene geneticgenetics geneticsgenetics glutathione govt information interface internet line mice non-us nucleic organ peroxidasegenetics promoter regions regulationgenetics regulatory response retrieval russia sequence sequences sites specificity storage support transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:25 as **
  • Combining frequency and positional information to predict transcription factor binding sites
    Bioinformatics, Vol. 17, No. 11. (2001), pp. 1019-26.
    by SM Kielbasa, JO Korbel, D Beule, J Schuchhardt, H Herzel
    posted to algorithms base binding biology cerevisiaegeneticsmetabolism computational databases dna dnageneticsmetabolism factorsmetabolism fungalgeneticsmetabolism genetic genetics human promoter regions saccharomyces sequence sitesgenetics software transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:25 as **
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (2003), pp. 241-54.
    by M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
    posted to acidgenetics alignment analysis base binding cerevisiae cerevisiaegenetics comparative conserved data dna elementsgenetics evolution expression factorsmetabolism framesgenetics fungal fungalgenetics gene genes genome genomics humans intronsgenetics molecular nucleic open proteinschemistrygenetics proteinsmetabolism reading regulation regulatory response saccharomyces saccharomycesgenetics sequence sequencegenetics sequences sites species specificity study transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • Identification of regulatory elements using a feature selection method
    Bioinformatics, Vol. 18, No. 9. (2002), pp. 1167-75.
    by S Keles, M van der Laan, MB Eisen
    posted to acid amino analysis analysismethods and array base carlo cerevisiaegenetics data dnamethods expression gene genetic govt method mitosisgenetics models molecular monte motifsgenetics of oligonucleotide pattern phs recognition regulationgenetics reproducibility results saccharomyces sensitivity sequence specificity statistical support us bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • Composition-sensitive analysis of the human genome for regulatory signals
    In Silico Biol, Vol. 3, No. 1-2. (2003), pp. 145-71.
    by Kel OV Margoulis, D Tchekmenev, AE Kel, E Goessling, K Hornischer, Lewicki B Potapov, E Wingender
    posted to acid and animals base chromosome chromosomes comparative composition dnachemistrygenetics genetic geneticgenetics geneticsgenetics genome human humangenetics mapping mathematics models nucleic promoter regions regulatory sensitivity sequences species specificity statistical study transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • A compilation of composite regulatory elements affecting gene transcription in vertebrates
    Nucleic Acids Res, Vol. 23, No. 20. (1995), pp. 4097-103.
    by OV Kel, AG Romaschenko, AE Kel, E Wingender, NA Kolchanov
    posted to acidgenetics animals base binding data databases dna-binding dnagenetics factors factual geneticgenetics govt molecular non-phs non-us nucleic proteins regulatory sequence sequences sites support transcription us vertebratesgenetics bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells
    J Mol Biol, Vol. 288, No. 3. (1999), pp. 353-76.
    by A Kel, Kel O Margoulis, V Babenko, E Wingender
    posted to acid activationgenetics animals ap-1chemistrymetabolism base binding data dna dna-binding expression factor factorschemistrymetabolism gene genetics govt homology human lymphocyte lymphokinesgenetics mice molecular non-us nucleic promoter proteinschemistrymetabolism regions sequence sites support t-lymphocytesimmunology transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:23 as **
  • Subtle motifs: defining the limits of motif finding algorithms
    Bioinformatics, Vol. 18, No. 10. (2002), pp. 1382-90.
    by U Keich, PA Pevzner
    posted to acid acidgenetics algorithms alignmentmethods amino analysis analysismethods and base benchmarking comparative consensus control data dna dnagenetics dnamethods genetic models molecular motifsgenetics mutational nucleic of processes quality regulatory reproducibility results sensitivity sequence sequencegenetics sequences software specificity statistical stochastic study bibtex-import by blobbybirdman on 2007-10-09 17:56:23 as **
  • Finding motifs in the twilight zone
    Bioinformatics, Vol. 18, No. 10. (2002), pp. 1374-81.
    by U Keich, PA Pevzner
    posted to acid acidgenetics algorithms alignmentmethods amino analysis and base benchmarking cerevisiaegeneticsmetabolism coligeneticsmetabolism comparative consensus control data dna-binding dnagenetics dnamethods escherichia geneticsgenetics molecular motifsgenetics nucleic promoter proteinsgenetics quality regions regulatory saccharomyces sensitivity sequence sequencegenetics sequences specificity study bibtex-import by blobbybirdman on 2007-10-09 17:56:23 as **
  • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    J Mol Biol, Vol. 296, No. 5. (2000), pp. 1205-14.
    by JD Hughes, PW Estep, S Tavazoie, GM Church
    posted to algorithms alignment base bias binding biologymethodsstatistics calibration cerevisiaegenetics codon computational data databases elementsgenetics epidemiology factorsmetabolism factual familygenetics framesgenetics fungal fungalgenetics genes genome initiatorgenetics multigene numerical of open reading reproducibility response results saccharomyces sequence sites software transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:22 as **
  • Information analysis of Fis binding sites
    Nucleic Acids Res, Vol. 25, No. 24. (1997), pp. 4994-5002.
    by PN Hengen, SL Bartram, LE Stewart, TD Schneider
    posted to acid bacterial base binding carrier coli coligeneticsmetabolism conformation data dna-binding dnachemistrymetabolism escherichia factor factors for genetics host integration inversion molecular nucleic promoter protein proteins proteinsgeneticsmetabolism proteinsmetabolism regions rna-binding rnachemistrymetabolism sequence sites stimulation bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome
    Genome Res, Vol. 7, No. 10. (1997), pp. 959-66.
    by RC Hardison, J Oeltjen, W Miller
    posted to acid alignment animals antigen base comparative data dna-binding expression gene genetic genome globinsgenetics hominidaegenetics human kinasegenetics micegenetics microtubule-associated models molecular myosinsgenetics nucleic proteinsgenetics protein-tyrosine receptors regulation regulatory sequence sequences study t-cellgenetics bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • Distribution patterns of over-represented k-mers in non-coding yeast DNA
    Bioinformatics, Vol. 18, No. 4. (2002), pp. 513-28.
    by S Hampson, D Kibler, P Baldi
    posted to acid amino analysis and array base cluster conserved data databases dnamethodsstatistics expression fungal gene genetic genome govt homology models molecular motifsgenetics non-us nucleic numerical of oligonucleotide pattern recognition regulationgenetics reproducibility results sensitivity sequence sequencegenetics specificity statistical support yeastsgenetics bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • Distinctive sequence features in protein coding genic non-coding, and intergenic human DNA
    J Mol Biol, Vol. 253, No. 1. (1995), pp. 51-60.
    by R Guigo, JW Fickett
    posted to algorithms analysis base composition databases discriminant dnagenetics factual framesgenetics genesgenetics govt human non-phs open phs proteinsgenetics reading sequencegenetics support us bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • The Mycobacterium tuberculosis IdeR is a dual functional regulator that controls transcription of genes involved in iron acquisition, iron storage and survival in macrophages
    Mol Microbiol, Vol. 42, No. 3. (2001), pp. 851-65.
    by B Gold, GM