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blobbybirdman evolution [40 articles]

Recent papers added to blobbybirdman library classified by the tag evolution. You can also see everyone's evolution.
  • THE EVOLUTION OF GENETIC REGULATORY SYSTEMS IN BACTERIA
    Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 169-178.
    by Harley H Mcadams, Balaji Srinivasan, Adam P Arkin
    posted to bacteria evolution gene-regulatory-networks by blobbybirdman on 2008-01-26 15:31:34 as ***** along with 1 person and 1 group balajis Myxo group
  • Maintenance of transposon-free regions throughout vertebrate evolution
    BMC Genomics, Vol. 8 (20 December 2007), 470.
    by Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
    posted to evolution transposons vertebrates by blobbybirdman on 2008-01-24 20:35:49 as *** along with 2 people and 2 groups cisevol idonaldson cis-regulatory-evolution BergmanLab
  • The genesis and evolution of homeobox gene clusters
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 881-892.
    by Jordi Garcia-Fernàndez
    posted to development evolution gene-cluster homeobox by blobbybirdman on 2008-01-24 19:59:33 as *** along with 7 people and 2 groups brant balicea emilyhare nickluscombe BioMaxi timflutre blackm0k EisenLab EBI-regulation
  • Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex
    Genome Res., Vol. 15, No. 5. (1 May 2005), pp. 692-700.
    by Barbara Negre, Sonia Casillas, Magali Suzanne, Ernesto Sanchez-Herrero, Michael Akam, Michael Nefedov, Antonio Barbadilla, Pieter de Jong, Alfredo Ruiz
    posted to drosophila evolution evolutionary-comparision hox by blobbybirdman on 2008-01-24 18:30:15 as *** along with 1 person elzodw
  • Animal Evolution: When Did the `Hox System' Arise?
    Current Biology, Vol. 16, No. 14. (25 July 2006), pp. R546-R548.
    by Chris T Amemiya, Gunter P Wagner
    posted to development evolution evolutionary-comparision hox by blobbybirdman on 2008-01-24 17:34:05 as **** along with 1 person BioMaxi
  • Genomic evolution of Hox gene clusters.
    Science, Vol. 313, No. 5795. (29 September 2006), pp. 1918-1922.
    by D Lemons, W McGinnis
    posted to evolution gene-cluster hox rna-interference by blobbybirdman on 2008-01-24 17:32:08 as **** along with 4 people and 1 group nsamways tardigrade mtagaya adepace EisenLab
  • HOM-C evolution in Drosophila: is there a need for Hox gene clustering?
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Barbara Negre, Alfredo Ruiz
    posted to drosophila evolution gene-cluster hox by blobbybirdman on 2008-01-24 17:11:23 as ** along with 2 people and 1 group indigoviolet emilyhare EisenLab
  • Understanding of bat wing evolution takes flight
    Genes Dev., Vol. 22, No. 2. (15 January 2008), pp. 121-124.
    by Kimberly L Cooper, Clifford J Tabin
    posted to development evolution genetics by blobbybirdman on 2008-01-22 11:43:36 as ***** along with 1 group cis-regulatory-evolution
  • Evidence for the Adaptive Evolution of Mutation Rates
    Cell, Vol. 101, No. 6. (9 June 2000), pp. 581-584.
    by David Metzgar, Christopher Wills
    posted to evolution genomics mutation-rates by blobbybirdman on 2007-10-29 16:49:01 as ***** along with 1 person and 1 group rebeccamancy ColDyn
  • Mutation rates in mammalian genomes
    Proceedings of the National Academy of Sciences, Vol. 99, No. 2. (22 January 2002), pp. 803-808.
    by Sudhir Kumar, Sankar Subramanian
    posted to evolution genomics mutation-rates by blobbybirdman on 2007-10-29 16:47:11 as read along with 3 people bpcusack lesander bandrewfox
  • Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
    Nature, Vol. 440, No. 7087., pp. 1050-1053.
    by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, Victoria A Kassner, Thomas M Williams, Shu-Dan Yeh, John R True, Sean B Carroll
    posted to cis-regulatory-elements development evolution gene-regulation by blobbybirdman on 2007-10-16 15:10:13 as **** along with 8 people and 1 group RMGraze dpollard balicea tny adepace ranb Garamonfok emptyhb EisenLab
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to evolution genomics by blobbybirdman on 2007-10-16 15:08:51 as **** along with 8 people and 2 groups clearbluespring skumagai mcphee dpollard dchughes djkt biomcgary kjlipin EisenLab cis-regulatory-evolution
  • Colloquium Papers: Emerging principles of regulatory evolution.
    Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8605-8612.
    by B Prud'homme, N Gompel, SB Carroll
    posted to cis-regulatory-elements development evolution gene-regulation gene-regulatory-networks morphogenesis by blobbybirdman on 2007-10-16 15:07:30 as **** along with 3 people and 2 groups dpollard cisevol emptyhb EisenLab cis-regulatory-evolution
  • The regulatory content of intergenic DNA shapes genome architecture.
    Genome Biol, Vol. 5, No. 4. (2004)
    by CE Nelson, BM Hersh, SB Carroll
    posted to cis-regulatory-elements evolution genomics non-coding-dna by blobbybirdman on 2007-10-16 15:05:49 as *** along with 4 people and 3 groups dpollard madhadron elzodw cisevol EisenLab cis-regulatory-evolution BergmanLab
  • notes Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to cis-regulatory-elements evolution molecular-biology-techniques non-coding-dna by blobbybirdman on 2007-10-15 13:00:50 as read along with 4 people and 3 groups emptyhb brant mimulus_99 cisevol UH - Computational Biology cis-regulatory-evolution Myxo group
  • An evolutionary constraint: Strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules
    Proceedings of the National Academy of Sciences, Vol. 102, No. 33. (16 August 2005), pp. 11769-11774.
    by Andrew R Cameron, Suk H Chow, Kevin Berney, Tsz-Yeung Chiu, Qiu-Autumn Yuan, Alexander Kramer, Argelia Helguero, Andrew Ransick, Mirong Yun, Eric H Davidson
    posted to cis-regulatory-elements evolution evolutionary-comparison non-coding-dna by blobbybirdman on 2007-10-15 12:53:52 as **** along with 2 people and 1 group cisevol emptyhb cis-regulatory-evolution
  • Combinatorial epigenetics, "junk DNA", and the evolution of complex organisms.
    Gene, Vol. 390, No. 1-2. (1 April 2007), pp. 232-242.
    by E Zuckerkandl, G Cavalli
    posted to epigenetics evolution gene-regulation non-coding-dna by blobbybirdman on 2007-10-14 11:55:32 as **** along with 2 people and 1 group margaritis cisevol cis-regulatory-evolution
  • Transcriptional regulation and the evolution of development
    Int J Dev Biol, Vol. 47, No. 7-8. (2003), pp. 675-84.
    by GA Wray
    posted to development evolution gene-regulation gene-regulatory-networks by blobbybirdman on 2007-10-09 17:56:40 as ****
  • Gene dosage balance: deletions, duplications and dominance
    Trends Genet, Vol. 21, No. 1. (2005), pp. 33-5.
    by RA Veitia
    posted to evolution genomics by blobbybirdman on 2007-10-09 17:56:39 as ***
  • Evolution of a fetal expression pattern via cis changes near the gamma globin gene
    J Biol Chem, Vol. 272, No. 22. (1997), pp. 14062-6.
    by C Tomhon, W Zhu, D Millinoff, K Hayasaka, JL Slightom, M Goodman, DL Gumucio
    posted to cis-regulatory-elements development evolution gene-regulation by blobbybirdman on 2007-10-09 17:56:38 as **
  • Evolution of biological information
    Nucleic Acids Res, Vol. 28, No. 14. (2000), pp. 2794-9.
    by TD Schneider
    posted to evolution genomics information-theory sequence-analysis by blobbybirdman on 2007-10-09 17:56:35 as ****
  • Bilaterian origins: significance of new experimental observations
    Dev Biol, Vol. 219, No. 1. (2000), pp. 1-17.
    by KJ Peterson, RA Cameron, EH Davidson
    posted to animals annelida biological chordata development developmental echinodermata evolution expression family gene genes govt homeobox invertebratesgeneticsgrowth models mollusca multigene non-phs non-us nonvertebrate phs phylogeny regulation research support us bibtex-import by blobbybirdman on 2007-10-09 17:56:31 as **
  • Dosage sensitivity and the evolution of gene families in yeast
    Nature, Vol. 424, No. 6945. (2003), pp. 194-7.
    by B Papp, C Pal, LD Hurst
    posted to binding cerevisiae cerevisiaegeneticsphysiology dosage evolution family fungal gene genes genetic govt heterozygote macromolecular models molecular multigene mutagenesis non-us protein proteinsgenetics research saccharomyces substances support bibtex-import by blobbybirdman on 2007-10-09 17:56:31 as **
  • Simulating evolution by gene duplication
    Genetics, Vol. 115, No. 1. (1987), pp. 207-13.
    by T Ohta
    posted to alleles crossing evolution family frequency gene genetic genetics govt models multigene non-us over research selection support bibtex-import by blobbybirdman on 2007-10-09 17:56:30 as **
  • rVISTA 2.0: evolutionary analysis of transcription factor binding sites
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (2004), pp. W217-21.
    by GG Loots, I Ovcharenko
    posted to acid algorithms alignment analysis binding dna dnachemistrymetabolism evolution factorsmetabolism interface internet molecular nucleic regulatory sequence sequences sites software transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (2003), pp. 241-54.
    by M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
    posted to acidgenetics alignment analysis base binding cerevisiae cerevisiaegenetics comparative conserved data dna elementsgenetics evolution expression factorsmetabolism framesgenetics fungal fungalgenetics gene genes genome genomics humans intronsgenetics molecular nucleic open proteinschemistrygenetics proteinsmetabolism reading regulation regulatory response saccharomyces saccharomycesgenetics sequence sequencegenetics sequences sites species specificity study transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • Evolution. Heirlooms in the attic
    Science, Vol. 302, No. 5647. (2003), pp. 997-9.
    by M Johnston, GD Stormo
    posted to cis-regulatory-elements evolution by blobbybirdman on 2007-10-09 17:56:23 as ***
  • Developmental gene regulatory network architecture across 500 million years of echinoderm evolution
    Proc Natl Acad Sci U S A, Vol. 100, No. 23. (2003), pp. 13356-61.
    by VF Hinman, AT Nguyen, RA Cameron, EH Davidson
    posted to animals biochemical chain cloning developmental dose-response drug echinodermatageneticsmetabolism evolution expression factors feedback gene govt mesodermmetabolism messengermetabolism molecular non-phs non-us phs phylogeny polymerase reaction regulation relationship research reverse rna sea starfish support time transcriptase transcription urchins us bibtex-import by blobbybirdman on 2007-10-09 17:56:22 as **
  • Evolutionary strategies for the elucidation of cis and trans factors that regulate the developmental switching programs of the beta-like globin genes
    Mol Phylogenet Evol, Vol. 5, No. 1. (1996), pp. 18-32.
    by DL Gumucio, DA Shelton, W Zhu, D Millinoff, T Gray, JH Bock, JL Slightom, M Goodman
    posted to algorithms binding_site_prediction evolution evolutionary-comparisons gene-regulation h_sapiens by blobbybirdman on 2007-10-09 17:56:21 as ***
  • An adaptive radiation model for the origin of new gene functions
    Nat Genet, Vol. 37, No. 6. (2005), pp. 573-7.
    by MP Francino
    posted to adaptation amplification animals biological duplication evolution gene genetic govt humans models mutagenesis non-phs physiological radiation research support us bibtex-import by blobbybirdman on 2007-10-09 17:56:19 as **
  • Coordinate positioning of MEF2 and myogenin binding sites
    Gene, Vol. 172, No. 1. (1996), pp. 19-32.
    by JW Fickett
    posted to animals base binding conserved data dna-binding elements enhancer evolution factorsgeneticsmetabolism genetic genetics govt human molecular myogeningeneticsmetabolism oligodeoxyribonucleotides phs proteinsgeneticsmetabolism sequence sites support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:19 as **
  • Distinguishing regulatory DNA from neutral sites
    Genome Res, Vol. 13, No. 1. (2003), pp. 64-72.
    by L Elnitski, RC Hardison, J Li, S Yang, D Kolbe, P Eswara, MJ O'Connor, S Schwartz, W Miller, F Chiaromonte
    posted to acidgenetics alignmentmethods animals base biologymethods compositiongenetics computational dnagenetics evolution exonsgenetics genetic govt human interspersed mice models molecular nucleic nucleotidesgenetics pairinggenetics phs regulatory repetitive sequence sequences sequencesgenetics support us bibtex-import by blobbybirdman on 2007-10-09 17:56:18 as **
  • Gene duplications: the gradual evolution of functional divergence
    Curr Biol, Vol. 13, No. 6. (2003), pp. R229-30.
    by JF Brookfield
    posted to animals cerevisiaegenetics deletion duplicategeneticsphysiology duplication evolution fungal gene genes genome molecular saccharomyces bibtex-import by blobbybirdman on 2007-10-09 17:56:13 as **
  • Gene regulation for higher cells: a theory
    Science, Vol. 165, No. 891. (1969), pp. 349-57.
    by RJ Britten, EH Davidson
    posted to acid amino biological cell code differentiation dna evolution genes genetic models regulator rna sequence bibtex-import by blobbybirdman on 2007-10-09 17:56:13 as **
  • AVID: A global alignment program
    Genome Res, Vol. 13, No. 1. (2003), pp. 97-102.
    by N Bray, I Dubchak, L Pachter
    posted to acidgenetics algorithms alignmentmethods and animals cats cattle chickens comparative dogs evolution exonsgenetics factors govt human molecular nucleic of pan phs rats regionsgenetics repetitive reproducibility results sensitivity sequence sequences software specificity study support swine time troglodytes untranslated us bibtex-import by blobbybirdman on 2007-10-09 17:56:12 as **
  • Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
    J Mol Biol, Vol. 193, No. 4. (1987), pp. 723-50.
    by OG Berg, PH von Hippel
    posted to base binding composition dna evolution genetic genetics govt models non-us operator phs promoter proteins regions repressor sequence sites statistics support us bibtex-import by blobbybirdman on 2007-10-09 17:56:11 as **
  • Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites
    J Mol Biol, Vol. 200, No. 4. (1988), pp. 709-23.
    by OG Berg, PH von Hippel
    posted to acid ampmetabolism bacterialmetabolism base binding coligeneticsmetabolism cyclic dna dna-binding dna-directed escherichia evolution genetic genetics govt homology kinetics models non-us nucleic phs polymerasesmetabolism promoter proteinsmetabolism receptors regions rna sequence sites support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:11 as **
  • Evolution of sensory complexity recorded in a myxobacterial genome
    PNAS, Vol. 103, No. 41. (10 October 2006), pp. 15200-15205.
    by BS Goldman, WC Nierman, D Kaiser, SC Slater, AS Durkin, JA Eisen, CM Ronning, WB Barbazuk, M Blanchard, C Field, C Halling, G Hinkle, O Iartchuk, HS Kim, C Mackenzie, R Madupu, N Miller, A Shvartsbeyn, SA Sullivan, M Vaudin, R Wiegand, HB Kaplan
    posted to evolution genomics m_xanthus myxobacteria by blobbybirdman on 2007-10-09 17:25:43 as read along with 3 people bjorns treangen stajich
  • The evolutionary origin of complex features.
    Nature, Vol. 423, No. 6936. (8 May 2003), pp. 139-144.
    by RE Lenski, C Ofria, RT Pennock, C Adami
    posted to alife complexity evolution by blobbybirdman on 2007-10-09 17:12:04 as **** along with 9 people and 2 groups camster karimlakhani PeterCollins alexisgallagher cmunson balicea rsantana RobMills ms609 dbk-lab MACLab
  • Evolution of novel cooperative swarming in the bacterium Myxococcus xanthus
    Nature, Vol. 425, No. 6953. (2003), pp. 75-78.
    by Gregory J Velicer, Yuen-Tsu N Yu
    posted to evolution m_xanthus swarming by blobbybirdman on 2007-10-09 17:08:24 as *** along with 1 person lingchong
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