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blobbybirdman genes [38 articles]

Recent papers added to blobbybirdman library classified by the tag genes. You can also see everyone's genes.
  • Genome-wide location and function of DNA binding proteins
    Science, Vol. 290, No. 5500. (2000), pp. 2306-9.
    by B Ren, F Robert, JJ Wyrick, O Aparicio, EG Jennings, I Simon, J Zeitlinger, J Schreiber, N Hannett, E Kanin, TL Volkert, CJ Wilson, SP Bell, RA Young
    posted to analysis array binding cell cerevisiae cerevisiaegeneticsmetabolismphysiology cycle dna dna-binding expression factorsmetabolism fungal fungalgeneticsmetabolism galactosemetabolism gene genes genetics genome govt non-us oligonucleotide peptidespharmacology phs profiling promoter proteins proteinsmetabolism regions regulation research saccharomyces sequence sites support trans-activation transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:32 as **
  • Motif discovery in heterogeneous sequence data
    Pac Symp Biocomput (2004), pp. 348-59.
    by A Prakash, M Blanchette, S Sinha, M Tompa
    posted to algorithms analysis animals binding biology caenorhabditis computational data dnastatistics elegansgenetics genes genetic genomicsstatistics govt helminth models non-phs non-us numerical phs regulator research sequence sitesgenetics support us bibtex-import by blobbybirdman on 2007-10-09 17:56:32 as **
  • Bilaterian origins: significance of new experimental observations
    Dev Biol, Vol. 219, No. 1. (2000), pp. 1-17.
    by KJ Peterson, RA Cameron, EH Davidson
    posted to animals annelida biological chordata development developmental echinodermata evolution expression family gene genes govt homeobox invertebratesgeneticsgrowth models mollusca multigene non-phs non-us nonvertebrate phs phylogeny regulation research support us bibtex-import by blobbybirdman on 2007-10-09 17:56:31 as **
  • Design superiority of palindromic DNA sites for site-specific recognition of proteins: tests using protein stitchery
    Proc Natl Acad Sci U S A, Vol. 90, No. 11. (1993), pp. 4892-6.
    by C Park, JL Campbell, 3rd
    posted to acid amino base binding comparative conformation data dna-binding dnageneticsmetabolism gene genes govt homology jun leucine macromolecular models molecular non-phs non-us nucleic oligodeoxyribonucleotideschemical oncogene p65gag-jungeneticsmetabolism peptideschemical protein proteinsgeneticsmetabolism rearrangement research secondary sequence sites structural structure study substances support synthesismetabolism us zippersgeneticsphysiology bibtex-import by blobbybirdman on 2007-10-09 17:56:31 as **
  • Dosage sensitivity and the evolution of gene families in yeast
    Nature, Vol. 424, No. 6945. (2003), pp. 194-7.
    by B Papp, C Pal, LD Hurst
    posted to binding cerevisiae cerevisiaegeneticsphysiology dosage evolution family fungal gene genes genetic govt heterozygote macromolecular models molecular multigene mutagenesis non-us protein proteinsgenetics research saccharomyces substances support bibtex-import by blobbybirdman on 2007-10-09 17:56:31 as **
  • Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers
    Genome Res, Vol. 12, No. 3. (2002), pp. 470-81.
    by DA Papatsenko, VJ Makeev, AP Lifanov, M Regnier, AG Nazina, C Desplan
    posted to acidgenetics algorithms animals bacterial base binding chromosome coli comparative data developmentalgenetics dna-binding drosophila elements enhancer escherichia expression factors familygenetics gene genes geneticsgenetics govt homeodomain insectgenetics mappingmethodsstatistics melanogastergenetics molecular multigene non-phs non-us nucleic numerical phs proteins proteinsgenetics protozoan regulation regulatory repeat research sequence sequences sequencesgenetics sitesgenetics structural study support tandem transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:30 as **
  • Deciphering genetic regulatory codes: a challenge for functional genomics
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (2002), pp. 546-8.
    by AM Michelson
    posted to algorithms animals binding developmental drosophila elements enhancer expression factorsmetabolism gene genes genetic genetics genomics govt insect melanogasterembryologygenetics models non-us regulation regulator research sitesgenetics support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:29 as **
  • Conservation of DNA regulatory motifs and discovery of new motifs in microbial genomes
    Genome Res, Vol. 10, No. 6. (2000), pp. 744-57.
    by AM Mcguire, JD Hughes, GM Church
    posted to acid alignment bacterial bacterialanalysis biology comparative computational conserved dna expression gene genes genome govt homology non-phs non-us nucleic regulation regulatory sequence sequencegenetics sequences structural study support us bibtex-import by blobbybirdman on 2007-10-09 17:56:29 as **
  • Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes
    Nucleic Acids Res, Vol. 29, No. 3. (2001), pp. 774-82.
    by L Mccue, W Thompson, C Carmack, MP Ryan, JS Liu, V Derbyshire, CE Lawrence
    posted to acid alignment bacterial bacterialgenetics bacterialgeneticsmetabolism base binding coligenetics databases dna escherichia factorsmetabolism factual gammaproteobacteriagenetics genes genome govt homology nucleic phs phylogeny protein sequence sitesgenetics support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:29 as **
  • Theory of time-resolved somatic complementation and its use to explore the sporulation control network in Physarum polycephalum
    Genetics, Vol. 164, No. 1. (2003), pp. 105-15.
    by W Marwan
    posted to animals data dominant factors genes govt interpretation kinetics light mutation non-us physarum polycephalumgeneticsphysiology protozoan recessive spores statistical support time bibtex-import by blobbybirdman on 2007-10-09 17:56:29 as **
  • Detecting functional interactions in a gene and signaling network by time-resolved somatic complementation analysis
    Bioessays, Vol. 25, No. 10. (2003), pp. 950-60.
    by W Marwan
    posted to animals biological cell complementation factors fusion genes genetic genetically govt models modified mutation non-us physarum polycephalumgenetics regulator signal support test time transduction bibtex-import by blobbybirdman on 2007-10-09 17:56:29 as **
  • Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (2002), pp. 763-8.
    by M Markstein, P Markstein, V Markstein, MS Levine
    posted to animals base binding dnageneticsmetabolism drosophila drosophilaembryologygeneticsmetabolism factors family female genes genetically genome govt homeodomain hybridization in insect lac male modified multigene nuclear operon phosphoproteinsmetabolism phs proteins proteinsgenetics proteinsmetabolism repressor research sequence sitesgenetics situ support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • Decoding cis-regulatory DNAs in the Drosophila genome
    Curr Opin Genet Dev, Vol. 12, No. 5. (2002), pp. 601-6.
    by M Markstein, M Levine
    posted to acid animals binding biology body computational drosophila factorsmetabolism family genes genetic genetics genome govt insect melanogasterembryologygeneticsmetabolism multigene nucleic patterninggenetics phs promoter regions regulator regulatory research sequences sitesgenetics support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    Nat Biotechnol, Vol. 20, No. 8. (2002), pp. 835-9.
    by XS Liu, DL Brutlag, JS Liu
    posted to algorithms analysismethods and array base binding biologymethods cerevisiae cerevisiaegenetics chromatingeneticsmetabolism computational dna-binding dnageneticsmetabolism elementsgenetics expression factors factorsmetabolism fungalgenetics gene genes govt internet non-phs oligonucleotide phs precipitin protein proteinsmetabolism regulation response saccharomyces sensitivity sequence sites software specificity support telomere-binding telomeregeneticsmetabolism testsmethods time transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:27 as **
  • BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    Pac Symp Biocomput (2001), pp. 127-38.
    by X Liu, DL Brutlag, JS Liu
    posted to alignmentstatistics amp analysisstatistics array bacillus base binding box cerevisiaegeneticsmetabolism chains coligeneticsmetabolism conserved cyclic data dnageneticsmetabolism escherichia expression gene genes genetic govt gtp-binding markov models non-phs non-us numerical oligonucleotide phs profilingstatistics proteinmetabolism proteinsmetabolism rap1 receptor regulator saccharomyces sequence sites software subtilisgeneticsmetabolism support tata us bibtex-import by blobbybirdman on 2007-10-09 17:56:27 as **
  • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    Nat Genet, Vol. 28, No. 4. (2001), pp. 327-34.
    by JD Lieb, X Liu, D Botstein, PO Brown
    posted to binding bindingphysiology cerevisiae cerevisiaegeneticsmetabolism chromosome deacetylasesmetabolism dna dna-binding dnametabolism expression framesphysiology fungal fungalphysiology gene genes geneticsphysiology genome glycolysisgenetics govt histone iimetabolism information intergenicmetabolism mappingmethods non-phs non-us open physical polymerase promoter protein proteins proteinsgenetics proteinsmetabolism reading regions regulationphysiology regulator research ribosomal rna saccharomyces silent sirtuins sitesgenetics support telomeremetabolism trans-activatorsmetabolism us bibtex-import by blobbybirdman on 2007-10-09 17:56:26 as **
  • Enrichment of regulatory signals in conserved non-coding genomic sequence
    Bioinformatics, Vol. 17, No. 10. (2001), pp. 871-7.
    by S Levy, S Hannenhalli, C Workman
    posted to algorithms alignmentstatistics analysis animals binding biology computational conserved data dnageneticsmetabolism dnastatistics factorsmetabolism genes genetic genome govt human mice models non-us numerical regulator sequence sitesgenetics support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:26 as **
  • Chromatin structure and transcription
    Annu Rev Cell Biol, Vol. 8 (1992), pp. 563-87.
    by RD Kornberg, Y Lorch
    posted to acid animals binding cerevisiaegeneticsmetabolism chromatinmetabolismultrastructure conformation dna-binding dnagenetics expression factorsmetabolism fungal gene genes genetic genetics histoneschemistry mammary models molecular mousegenetics nucleic nucleosomesultrastructure promoter protein proteinsgeneticsmetabolism proteinsmetabolism regions regulation regulatory repetitive saccharomyces sequences structural transcription tumor virus bibtex-import by blobbybirdman on 2007-10-09 17:56:25 as **
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (2003), pp. 241-54.
    by M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
    posted to acidgenetics alignment analysis base binding cerevisiae cerevisiaegenetics comparative conserved data dna elementsgenetics evolution expression factorsmetabolism framesgenetics fungal fungalgenetics gene genes genome genomics humans intronsgenetics molecular nucleic open proteinschemistrygenetics proteinsmetabolism reading regulation regulatory response saccharomyces saccharomycesgenetics sequence sequencegenetics sequences sites species specificity study transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • Conservation of DNA curvature signals in regulatory regions of prokaryotic genes
    Nucleic Acids Res, Vol. 31, No. 23. (2003), pp. 6770-7.
    by R Jauregui, Abreu C Goodger, Moreno G Hagelsieb, Collado J Vides, E Merino
    posted to acid acidgenetics archaeal archaealchemistrymetabolism archaealgenetics bacterial bacterialchemistrymetabolism bacterialgenetics cell cellsmetabolism conformation conserved divisiongenetics dna expression factor flagellagenetics for gene genes geneticsgenetics genome genomics glutamate-ammonia govt gyrasegenetics inversion ligasegenetics non-us nucleic prokaryotic promoter proteingenetics regions regulation regulatory research sequencegenetics sequences stimulation support transposasesgenetics bibtex-import by blobbybirdman on 2007-10-09 17:56:22 as **
  • Functional discovery via a compendium of expression profiles
    Cell, Vol. 102, No. 1. (2000), pp. 109-26.
    by TR Hughes, MJ Marton, AR Jones, CJ Roberts, R Stoughton, CD Armour, HA Bennett, E Coffey, H Dai, YD He, MJ Kidd, AM King, MR Meyer, D Slade, PY Lum, SB Stepaniants, DD Shoemaker, D Gachotte, K Chakraburtty, J Simon, M Bard, SH Friend
    posted to cell cerevisiaedrug complementation databases effectsgeneticsphysiology ergosterolbiosynthesis expression factual frames fungal gene genes genetic genetics govt humans isomerasesgenetics mitochondriametabolism models mutagenesis non-us open phenotype phs profiling propiophenonespharmacology proteinsbiosynthesisgenetics reading receptors regulation reporter research ribosomes saccharomyces sigmagenetics steroid support test transcription us variation wallphysiology bibtex-import by blobbybirdman on 2007-10-09 17:56:22 as **
  • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    J Mol Biol, Vol. 296, No. 5. (2000), pp. 1205-14.
    by JD Hughes, PW Estep, S Tavazoie, GM Church
    posted to algorithms alignment base bias binding biologymethodsstatistics calibration cerevisiaegenetics codon computational data databases elementsgenetics epidemiology factorsmetabolism factual familygenetics framesgenetics fungal fungalgenetics genes genome initiatorgenetics multigene numerical of open reading reproducibility response results saccharomyces sequence sites software transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:22 as **
  • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    J Mol Biol, Vol. 281, No. 5. (1998), pp. 827-42.
    by J van Helden, B Andre, Collado J Vides
    posted to acidgenetics algorithms binding cerevisiaegenetics communication computer computers dna-binding expression factorsmetabolism fungal fungalgenetics gene genes genome govt networks non-us nucleic oligodeoxyribonucleotidesanalysis proteinsgenetics regulation regulatory research saccharomyces sequences sitesgenetics support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • Detection of cis-element clusters in higher eukaryotic DNA
    Bioinformatics, Vol. 17, No. 10. (2001), pp. 878-89.
    by MC Frith, U Hansen, Z Weng
    posted to algorithms analysis and animals binding biology chains cluster computational data dnageneticsmetabolism dnastatistics factorsmetabolism genes genetics genome govt human markov musclesmetabolism non-phs non-us numerical phs promoter regions regulator sensitivity sequence sitesgenetics software specificity support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:20 as **
  • Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3510-7.
    by YJ Edwards, TJ Carver, T Vavouri, M Frith, MJ Bishop, G Elgar
    posted to acid alignmentmethods analysis animals base binding components computer data dnamethods expression factorsmetabolism fishesgenetics gene genes genetics genomicsmethods graphics hamsters human interface internet mice molecular nucleic p53 promoter rats regions regulation repetitive sequence sequences sites software transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:18 as **
  • A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo
    Dev Biol, Vol. 246, No. 1. (2002), pp. 162-90.
    by EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, T Minokawa, G Amore, V Hinman, Arenas C Mena, O Otim, CT Brown, CB Livi, PY Lee, R Revilla, MJ Schilstra, PJ Clarke, AG Rust, Z Pan, MI Arnone, L Rowen, RA Cameron, DR Mcclay, L Hood, H Bolouri
    posted to animals biological endoderm genes govt mesoderm messengergeneticsmetabolism models non-phs non-us phs regulator rna sea support urchinsembryology us bibtex-import by blobbybirdman on 2007-10-09 17:56:17 as **
  • A genomic regulatory network for development
    Science, Vol. 295, No. 5560. (2002), pp. 1669-78.
    by EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, T Minokawa, G Amore, V Hinman, Arenas C Mena, O Otim, CT Brown, CB Livi, PY Lee, R Revilla, AG Rust, Z Pan, MJ Schilstra, PJ Clarke, MI Arnone, L Rowen, RA Cameron, DR Mcclay, L Hood, H Bolouri
    posted to acid animals biological biology cell cellsphysiology computational development developmental embryo endodermcytologyphysiology expression gene genes genetic genome govt lineage mesodermcytologyphysiology models morphogenesis nonmammaliangrowth non-phs non-us nucleic phs profiling regulation regulator regulatory sea sequences stem support systems theory urchinsembryologygenetics us bibtex-import by blobbybirdman on 2007-10-09 17:56:17 as **
  • Specification of cell fate in the sea urchin embryo: summary and some proposed mechanisms
    Development, Vol. 125, No. 17. (1998), pp. 3269-90.
    by EH Davidson, RA Cameron, A Ransick
    posted to animals biological blastomerescytology body cell chimera development developmental ectodermcytology endodermcytology expression factorsmetabolism female gene genes govt homeobox larvacytology male mesodermcytology models non-phs ovumcytology patterning phs polarity regulation sea signal support transcription transduction urchinsembryologygeneticsgrowth us bibtex-import by blobbybirdman on 2007-10-09 17:56:17 as **
  • Ligation-mediated PCR for quantitative in vivo footprinting
    Nat Biotechnol, Vol. 18, No. 10. (2000), pp. 1108-11.
    by SM Dai, HH Chen, C Chang, AD Riggs, SD Flanagan
    posted to analysis and animals automation cells chain cho damagegenetics dna dnamethods dyes factors fluorescent footprintingmethods genes geneticsgenetics govt hamsters hela humans infrared kinasegenetics ligasesmetabolism methylation of p53genetics phosphoglycerate phs polymerase primersgenetics promoter rays reactionmethods regions repairgenetics reproducibility research results robotics sensitivity sequence specificity support time ultraviolet us bibtex-import by blobbybirdman on 2007-10-09 17:56:17 as **
  • From transcriptional regulation to aggressive behavior
    Behav Genet, Vol. 33, No. 5. (2003), pp. 549-62.
    by UM D'Souza, A Kel, F Sluyter
    posted to acid aggressionphysiology alignment animals base data elements enhancer exons expression factorsmetabolism gene genes genetic geneticgenetics genetics homology human introns mice models molecular nucleic promoter rats regions regulationgenetics sequence silencer transcription transcriptional bibtex-import by blobbybirdman on 2007-10-09 17:56:16 as **
  • Integrating regulatory motif discovery and genome-wide expression analysis
    Proc Natl Acad Sci U S A, Vol. 100, No. 6. (2003), pp. 3339-44.
    by EM Conlon, XS Liu, JD Lieb, JS Liu
    posted to algorithms analysisstatistics array base cell cerevisiaecytologygenetics cyclegenetics data dna expression fungal fungalgenetics gene genes genomics govt linear models non-phs non-us numerical oligonucleotide phs profilingstatistics regulator saccharomyces sequence support us bibtex-import by blobbybirdman on 2007-10-09 17:56:16 as **
  • New computational approaches for analysis of cis-regulatory networks
    Dev Biol, Vol. 246, No. 1. (2002), pp. 86-102.
    by CT Brown, AG Rust, PJ Clarke, Z Pan, MJ Schilstra, T De Buysscher, G Griffin, BJ Wold, RA Cameron, EH Davidson, H Bolouri
    posted to acid artificial bacterial biology chromosomes complementary computational dna genes govt hybridization non-us nucleic