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cactus library [282 articles]

Статьи, недавно добавленные в библиотеку cactus .
  • Long single [alpha]-helical tail domains bridge the gap between structure and function of myosin VI
    Nat Struct Mol Biol, Vol. 15, No. 6. (June 2008), pp. 591-597.
    by Benjamin J Spink, Sivaraj Sivaramakrishnan, Jan Lipfert, Sebastian Doniach, James A Spudich
    posted to myosin mutation motor experiment by cactus on 2008-06-20 09:37:44 as ** along with 1 person and 1 group melting moernerlab
  • Protein disaggregation by the AAA+ chaperone ClpB involves partial threading of looped polypeptide segments
    Nat Struct Mol Biol, Vol. 15, No. 6. (June 2008), pp. 641-650.
    by Tobias Haslberger, Agnieszka Zdanowicz, Ingo Brand, Janine Kirstein, Kursad Turgay, Axel Mogk, Bernd Bukau
    posted to experiment dnak clpb chaperone by cactus on 2008-06-20 08:15:31 as **
  • Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association
    Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7456-7461.
    by Chia-En A Chang, William A Mclaughlin, Riccardo Baron, Wei Wang, Andrew J Mccammon
    posted to simulation protein fullatom binding by cactus on 2008-06-19 09:10:36 as **
  • Paired beta-sheet structure of an Abeta(1-40) amyloid fibril revealed by electron microscopy
    Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7462-7466.
    by Carsten Sachse, Marcus Fandrich, Nikolaus Grigorieff
    posted to structure experiment em amyloid by cactus on 2008-06-19 08:57:17 as **
  • Protein folding: Independent unrelated pathways or predetermined pathway with optional errors
    Proceedings of the National Academy of Sciences, Vol. 105, No. 20. (20 May 2008), pp. 7182-7187.
    by Sabrina Bedard, Mallela M Krishna, Leland Mayne, Walter S Englander
    posted to protein pathway folding experiment by cactus on 2008-06-19 06:51:57 as ** along with 1 person apaydin
  • Chaperone-dependent amyloid assembly protects cells from prion toxicity
    Proceedings of the National Academy of Sciences, Vol. 105, No. 20. (20 May 2008), pp. 7206-7211.
    by Peter M Douglas, Sebastian Treusch, Hong-Yu Ren, Randal Halfmann, Martin L Duennwald, Susan Lindquist, Douglas M Cyr
    posted to clip chaperone amyloid by cactus on 2008-06-19 06:38:58 as ** along with 1 person applebyb
  • A phase diagram for jammed matter
    Nature, Vol. 453, No. 7195., pp. 629-632.
    by Chaoming Song, Ping Wang, Hernán A Makse
    posted to physics packing granular-material clip2 by cactus on 2008-06-19 06:05:46 as ** along with 2 people wmppaul sen_cheng
  • Rattling the cage: computational models of chaperonin-mediated protein folding
    Current Opinion in Structural Biology, Vol. 18, No. 2. (April 2008), pp. 163-169.
    by Jeremy England, Del Lucent, Vijay Pande
    posted to simulation review re groel chaperonin by cactus on 2008-05-26 05:26:12 as **
  • notes Multiple Conformations of E. coli Hsp90 in Solution: Insights into the Conformational Dynamics of Hsp90
    Structure, Vol. 16, No. 5. (7 May 2008), pp. 755-765.
    by Kristin A Krukenberg, Friedrich Förster, Luke M Rice, Andrej Sali, David A Agard
    posted to xray-scattering structure structural_change chaperone by cactus on 2008-05-21 08:05:04 as **
  • Improved Structures of Full-Length p97, an AAA ATPase: Implications for Mechanisms of Nucleotide-Dependent Conformational Change
    Structure, Vol. 16, No. 5. (7 May 2008), pp. 715-726.
    by Jason M Davies, Axel T Brunger, William I Weis
    posted to xray-crystal-structure protease aaa by cactus on 2008-05-21 07:50:58 as **
  • The Mechanics of Translocation: A Molecular "Spring-and-Ratchet" System
    Structure, Vol. 16, No. 5. (7 May 2008), pp. 664-672.
    by Stephen J Moran, Flanagan, Olivier Namy, David I Stuart, Ian Brierley, Robert J Gilbert
    posted to translocation ribosome review by cactus on 2008-05-21 07:34:52 as **
  • Monitoring Protein Conformation along the Pathway of Chaperonin-Assisted Folding
    Cell, Vol. 133, No. 1. (4 April 2008), pp. 142-153.
    by Shruti Sharma, Kausik Chakraborty, Barbara K Muller, Nagore Astola, Yun-Chi Tang, Don C Lamb, Manajit Hayer-Hartl, Ulrich F Hartl
    posted to protein groel fret folding experiment by cactus on 2008-05-14 07:28:04 as ** along with 1 person rph
  • Kemp elimination catalysts by computational enzyme design
    Nature (19 March 2008)
    by Daniela Röthlisberger, Olga Khersonsky, Andrew M Wollacott, Lin Jiang, Jason Dechancie, Jamie Betker, Jasmine L Gallaher, Eric A Althoff, Alexandre Zanghellini, Orly Dym, Shira Albeck, Kendall N Houk, Dan S Tawfik, David Baker
    posted to protein enzyme design clip2 by cactus on 2008-05-08 12:06:27 as ** along with 5 people and 1 group sobolevnrm austin neils jwm msuarezdiez baker-group
  • Dynamic binding orientations direct activity of HIV reverse transcriptase
    Nature, Vol. 453, No. 7192. (May 2008), pp. 184-189.
    by Elio A Abbondanzieri, Gregory Bokinsky, Jason W Rausch, Jennifer X Zhang, Stuart F Le Grice, Xiaowei Zhuang
    posted to protein function clip2 by cactus on 2008-05-08 12:05:28 as ** along with 2 people and 1 group kieran101 wsjames Oxford Virology
  • Modeling transient collapsed states of an unfolded protein to provide insights into early folding events
    Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6278-6283.
    by Daniel J Felitsky, Michael A Lietzow, Jane H Dyson, Peter E Wright
    posted to spin protein nmr folding experiment clip2 by cactus on 2008-05-07 08:23:51 as **
  • Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction
    Proceedings of the National Academy of Sciences (17 April 2008), 0708708105.
    by Saul Lapidus, Bo Han, Jin Wang
    posted to signal network cell by cactus on 2008-05-07 08:01:43 as ** along with 4 people ddcttrl margaritis biehl jjray
  • Conservation of the regulated structure of folded myosin 2 in species separated by at least 600 million years of independent evolution
    Proceedings of the National Academy of Sciences, Vol. 105, No. 16. (22 April 2008), pp. 6022-6026.
    by Hyun S Jung, Stan A Burgess, Neil Billington, Melanie Colegrave, Hitesh Patel, Joseph M Chalovich, Peter D Chantler, Peter J Knight
    posted to structure myosin em clip by cactus on 2008-05-07 07:29:50 as **
  • The lattice as allosteric effector: Structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5378-5383.
    by Luke M Rice, Elizabeth A Montabana, David A Agard
    posted to xray-crystal-structure structural_change simulation polymerization kinetics allostery by cactus on 2008-05-02 11:25:14 as ** along with 1 person skv
  • The thermal impulse response of Escherichia coli
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5373-5377.
    by Eli Paster, William S Ryu
    posted to temperature ecoli clip2 cell adaptation by cactus on 2008-05-02 11:20:31 as **
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to network analysis by cactus on 2008-05-02 09:11:17 as ** along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor kengg pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali AbnerCYH tny briordan deanmalmgren soramame_0518
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to stability network gene_expression evolution clip2 cell by cactus on 2008-05-02 09:03:55 as ** along with 15 people and 4 groups michaelbarton austin AbnerCYH hryk margaritis dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid BergmanLab SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Following translation by single ribosomes one codon at a time
    Nature (09 March 2008)
    by Jin-Der Wen, Laura Lancaster, Courtney Hodges, Ana-Carolina Zeri, Shige H Yoshimura, Harry F Noller, Carlos Bustamante, Ignacio Tinoco
    posted to rna ribosome motor experiment clip2 by cactus on 2008-05-02 08:49:43 as ** along with 4 people simone dchughes jonathanjacobs melting
  • Minimalist Protein Model as a Diagnostic Tool for Misfolding and Aggregation
    Journal of Molecular Biology, Vol. 363, No. 1. (13 October 2006), pp. 297-308.
    by Silvina Matysiak, Cecilia Clementi
    posted to folding md model protein by cactus on 2008-04-18 12:26:33 as ****
  • Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play.
    J Mol Biol (29 February 2008)
    by Chung-Jung J Tsai, Antonio Del Sol, Ruth Nussinov
    posted to allostery o by cactus on 2008-04-18 12:18:17 as ** along with 5 people and 1 group higueruelo barry choonpeng sobolevnrm CameronNeylon structural_bioinformatics
  • Nucleation of an Allosteric Response via Ligand-induced Loop Folding
    Journal of Molecular Biology, Vol. 373, No. 1. (12 October 2007), pp. 96-111.
    by Saranga Naganathan, Dorothy Beckett
    posted to allostery dimerization experiment folding by cactus on 2008-04-18 10:06:03 as ****
  • A Cytoskeletal Demolition Worker: Myosin II Acts as an Actin Depolymerization Agent
    Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 325-330.
    by Lior Haviv, David Gillo, Frederic Backouche, Anne Bernheim-Groswasser
    posted to actin experiment motor myosin polymerization by cactus on 2008-04-17 11:54:32 as **
  • Kinetic Analysis of the Slow Skeletal Myosin MHC-1 Isoform from Bovine Masseter Muscle
    Journal of Molecular Biology, Vol. 373, No. 5. (9 November 2007), pp. 1184-1197.
    by MJ Bloemink, N Adamek, C Reggiani, MA Geeves
    posted to experiment isoform kinetics myosin by cactus on 2008-04-17 11:42:19 as **
  • Predicting Allosteric Communication in Myosin via a Pathway ofConserved Residues
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Susan Tang, Jung-Chi Liao, Alexander R Dunn, Russ B Altman, James A Spudich, Jeanette P Schmidt
    posted to alignment allostery myosin sequence by cactus on 2008-04-17 11:07:47 as ** along with 5 people and 2 groups barry choonpeng sobolevnrm jlh64 melting structural_bioinformatics baker-group
  • Evidence for an Interaction between the SH3 Domain and the N-terminal Extension of the Essential Light Chain in Class II Myosins
    Journal of Molecular Biology, Vol. 371, No. 4. (24 August 2007), pp. 902-913.
    by Susan Lowey, Lakshmi D Saraswat, Hongjun Liu, Niels Volkmann, Dorit Hanein
    posted to clip em experiment fret motor myosin by cactus on 2008-04-17 09:31:04 as **
  • Diversity of Structural Behavior in Vertebrate Conventional Myosins Complexed with Actin
    Journal of Molecular Biology, Vol. 369, No. 1. (25 May 2007), pp. 249-264.
    by Hiroyuki Iwamoto, Kazuhiro Oiwa, Mihály Kovács, James R Sellers, Takuya Suzuki, Jun'ichi Wakayama, Takumi Tamura, Naoto Yagi, Tetsuro Fujisawa
    posted to experiment fluctuation motor myosin nucleotide structure xray-diffraction by cactus on 2008-04-17 07:30:37 as **
  • Watching rocks grow
    Nat Phys, Vol. 4, No. 4. (April 2008), pp. 310-313.
    by Veysey, Nigel Goldenfeld
    posted to clip2 geometry pattern_formation by cactus on 2008-04-02 10:33:07 as **
  • GroEL stimulates protein folding through forced unfolding
    Nature Structural & Molecular Biology, Vol. 15, No. 3. (02 March 2008), pp. 303-311.
    by Zong Lin, Damian Madan, Hays S Rye
    posted to chaperonin experiment fret groel unfolding by cactus on 2008-04-02 10:22:14 as ** along with 3 people aalibes choonpeng zwang
  • Stabilization of a beta-hairpin in monomeric Alzheimer's amyloid-beta peptide inhibits amyloid formation
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 5099-5104.
    by Wolfgang Hoyer, Caroline Gronwall, Andreas Jonsson, Stefan Stahl, Torleif Hard
    posted to a-beta amyloid experiment stability by cactus on 2008-04-02 10:14:07 as ** along with 2 people merj jennifermbui
  • Interconversion between two unrelated protein folds in the lymphotactin native state
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 5057-5062.
    by Robbyn L Tuinstra, Francis C Peterson, Snjezana Kutlesa, Sonay E Elgin, Michael A Kron, Brian F Volkman
    posted to dimerization experiment nmr structural_change by cactus on 2008-04-02 10:10:53 as ** along with 1 person marck
  • Reassessing a sparse energetic network within a single protein domain
    Proceedings of the National Academy of Sciences (13 March 2008), 0711732105.
    by Celestine N Chi, Lisa Elfstrom, Yao Shi, Tord Snall, Ake Engstrom, Per Jemth
    posted to allostery experiment mutant stability by cactus on 2008-04-02 09:33:26 as ** along with 4 people and 1 group sobolevnrm apaydin cjeans sunhwan baker-group
  • Myosin V and Kinesin act as tethers to enhance each others' processivity
    Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4691-4696.
    by Yusuf M Ali, Hailong Lu, Carol S Bookwalter, David M Warshaw, Kathleen M Trybus
    posted to experiment kinesin myosin processivity by cactus on 2008-04-02 09:24:02 as ** along with 1 person melting
  • The kinetic mechanism of kinesin.
    Trends Biochem Sci, Vol. 29, No. 6. (June 2004), pp. 301-309.
    by RA Cross
    posted to kinesin kinetics review by cactus on 2008-03-26 08:35:47 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Weak and Strong States of Kinesin and ncd
    Journal of Molecular Biology, Vol. 257, No. 1. (22 March 1996), pp. 66-76.
    by Isabelle M Crevel, Andrew Lockhart, Robert A Cross
    posted to binding experiment kinesin kinetics microtubule by cactus on 2008-03-26 08:32:54 as **
  • X-ray Structure and Microtubule Interaction of the Motor Domain of Neurospora crassa NcKin3, a Kinesin with Unusual Processivity(,).
    Biochemistry (19 January 2008)
    by Alexander Marx, Jens Müller, Eva-Maria M Mandelkow, Günther Woehlke, Cedric Bouchet-Marquis, Andreas Hoenger, Eckhard Mandelkow
    posted to kinesin motor xray-crystal-structure by cactus on 2008-02-29 10:59:03 as **
  • A cool look at the structural changes in kinesin motor domains
    J Cell Sci, Vol. 120, No. 22. (15 November 2007), pp. 3919-3927.
    by Linda A Amos, Keiko Hirose
    posted to kinesin motor structure by cactus on 2008-02-28 11:41:11 as **
  • Free-energy landscape of kinesin by a realistic lattice model
    Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 1. (2008), pp. 389-395.
    by Hiroo Kenzaki, Macoto Kikuchi
    posted to free-energy kinesin mc motor by cactus on 2008-02-28 11:19:56 as **
  • Subunits interactions in kinesin motors
    European Journal of Cell Biology, Vol. 86, No. 9. (14 September 2007), pp. 559-568.
    by Krzysztof J Skowronek, Elzbieta Kocik, Andrzej A Kasprzak
    posted to kinesin motor review strain by cactus on 2008-02-28 11:10:55 as **
  • From the Cover: Detection of fractional steps in cargo movement by the collective operation of kinesin-1 motors
    Proceedings of the National Academy of Sciences, Vol. 104, No. 26. (26 June 2007), pp. 10847-10852.
    by Cecile Leduc, Felix Ruhnow, Jonathon Howard, Stefan Diez
    posted to experiment kinesin motor by cactus on 2008-02-28 11:09:56 as ** along with 1 person skv
  • Large conformational changes in a kinesin motor catalyzed by interaction with microtubules.
    Mol Cell, Vol. 23, No. 6. (15 September 2006), pp. 913-923.
    by K Hirose, E Akimaru, T Akiba, SA Endow, LA Amos
    posted to binding em kinesin microtubule motor structure by cactus on 2008-02-28 10:38:20 as ** along with 1 person qwermish
  • Myosin II isoforms in smooth muscle: heterogeneity and function
    Am J Physiol Cell Physiol, Vol. 293, No. 2. (1 August 2007), pp. C493-508.
    by Thomas J Eddinger, Daniel P Meer
    posted to alignment isoform motor myosin review by cactus on 2008-02-28 10:13:07 as **
  • Kinetic Characterization of the Function of Myosin Loop 4 in the Actin-Myosin Interaction
    Biochemistry, Vol. 47, No. 1. (8 January 2008), pp. 283-291.
    by M Gyimesi, AK Tsaturyan, MSZ Kellermayer, A Malnasi-Csizmadia
    posted to fluorescent kinetics motor mutation myosin trp by cactus on 2008-02-28 09:49:37 as **
  • Myosin Transducer Mutations Differentially Affect Motor Function, Myofibril Structure, and the Performance of Skeletal and Cardiac Muscles
    Mol. Biol. Cell, Vol. 19, No. 2. (1 February 2008), pp. 553-562.
    by Anthony Cammarato, Corey M Dambacher, Aileen F Knowles, William A Kronert, Rolf Bodmer, Karen Ocorr, Sanford I Bernstein
    posted to isoform motor mutation myosin by cactus on 2008-02-28 08:46:38 as **
  • Engineering the Processive Run Length of Myosin V
    J. Biol. Chem., Vol. 282, No. 37. (14 September 2007), pp. 27192-27197.
    by Alex R Hodges, Elena B Krementsova, Kathleen M Trybus
    posted to experiment motor mutation myosin processivity by cactus on 2008-02-28 07:55:12 as ** along with 1 person melting
  • The post-rigor structure of myosin VI and implications for the recovery stroke
    The EMBO Journal, Vol. aop, No. current. (29 November 2007)
    by Julie Menetrey, Paola Llinas, Jerome Cicolari, Gaelle Squires, Xiaoyan Liu, Anna Li, Lee H Sweeney, Anne Houdusse
    posted to motor myosin xray-crystal-structure by cactus on 2008-02-28 06:09:50 as ** along with 1 person melting
  • Kinetic Mechanism of the Fastest Motor Protein, Chara Myosin
    J. Biol. Chem., Vol. 282, No. 27. (6 July 2007), pp. 19534-19545.
    by Kohji Ito, Mitsuo Ikebe, Taku Kashiyama, Toshifumi Mogami, Takahide Kon, Keiichi Yamamoto
    posted to experiment motor myosin by cactus on 2008-02-27 07:22:11 as ** along with 1 person melting
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