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cassj library [217 articles]

Статьи, недавно добавленные в библиотеку cassj .
  • Determination of the differentially expressed genes in microarray experiments using local FDR
    BMC Bioinformatics, Vol. 5 (2004), 125.
    by J Aubert, A Bar-Hen, JJ Daudin, S Robin
    posted to fdr microarray by cassj on 2008-02-17 13:53:20 as read
  • Neurogenin and NeuroD direct transcriptional targets and their regulatory enhancers
    The EMBO Journal
    by Seongjin Seo, Jong-Won Lim, Dhananjay Yellajoshyula, Li-Wei Chang, Kristen L Kroll
    posted to bhlh neurod neurogenesis neurogenin targets transcriptional by cassj on 2007-12-03 13:55:44 as ***
  • Stalled polymerases and transcriptional regulation
    Nature Genetics, Vol. 39, No. 12., pp. 1421-1422.
    by John W Tamkun
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
  • Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Stefan Engelen, Fariza Tahi
    posted to folding prediction rna structure by cassj on 2007-12-03 13:15:56 as ** along with 1 person nklee
  • Where do you know what you know? The representation of semantic knowledge in the human brain
    Nature Reviews Neuroscience, Vol. 8, No. 12., pp. 976-987.
    by Karalyn Patterson, Peter J Nestor, Timothy T Rogers
  • Producing primate embryonic stem cells by somatic cell nuclear transfer
    Nature (14 November 2007)
    posted to cell es nuclear primate stem transfer by cassj on 2007-11-23 10:12:04 as ** along with 2 people bbiscaro dvaidpz
  • Whole genome amplification on poly(dimethylsiloxane) microchip array
    Analytical Biochemistry, Vol. 372, No. 1. (1 January 2008), pp. 128-130.
    by Lin Chen, Andreas Manz, Philip J Day
    posted to amplification array genome microchip whole by cassj on 2007-11-21 12:53:00 as **
  • I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2897-2902.
    by Willem Talloen, Djork-Arne Clevert, Sepp Hochreiter, Dhammika Amaratunga, Luc Bijnens, Stefan Kass, Hinrich W Gohlmann
  • Inferring activity changes of transcription factors by binding association with sorted expression profiles
    BMC Bioinformatics, Vol. 8 (16 November 2007), 452.
    by Chao Cheng, Xiting Yan, Fengzhu Sun, Lei M Li
  • Clustal W and Clustal X version 2.0
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948.
    posted to alignment clustalw by cassj on 2007-11-17 21:17:43 as *** along with 3 people bmaust lisa1 ryanraaum
  • Systematic order dependent effect in expression values, variance, detection calls and differential expression in Affymetrix GeneChips(R).
    Bioinformatics (25 September 2007)
    by Kathe E E Bjork, Karen Kafadar
    posted to affy analysis mas5 microarray rma by cassj on 2007-11-17 21:12:21 as ** along with 1 person ghattem
  • OSCAR: One-class SVM for Accurate Recognition of Cis-elements
    Bioinformatics (5 October 2007), btm473.
    by Bo Jiang, Michael Q Zhang, Xuegong Zhang
  • Optimization of primer design for the detection of variable genomic lesions in cancer
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2807-2815.
    by Ali Bashir, Yu-Tsueng Liu, Benjamin J Raphael, Dennis Carson, Vineet Bafna
    posted to design primer by cassj on 2007-11-17 21:06:21 as **** along with 1 person vanyapel
  • Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e206.
    by Tom C Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J Grocock, Shiri Freilich, Janet Thornton, Anton J Enright
  • Evolutionary Models for Formation of Network Motifs and Modularity in the Saccharomyces Transcription Factor Network
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e198.
    by Jonathan J Ward, Janet M Thornton
    posted to no-tag by cassj on 2007-11-15 10:46:09 as ** along with 4 people balicea cjeans vsree007 kristen
  • Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e193.
    by Jakob H Havgaard, Elfar Torarinsson, Jan Gorodkin
  • Getting started in tiling microarray analysis.
    PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1842-1844.
    by XS Liu
    posted to array review tiling by cassj on 2007-11-15 10:39:11 as ** along with 4 people jfr cabbagezs waszak yevishere
  • Partition function and base pairing probabilities of RNA heterodimers
    Algorithms for Molecular Biology, Vol. 1 (16 March 2006), 3.
    by Stephan H Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F Stadler, Ivo L Hofacker
  • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 185-193.
    by BM Bolstad, RA Irizarry, M Astrand, TP Speed
  • A new summarization method for affymetrix probe level data
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 943-949.
    by Sepp Hochreiter, Djork-Arne Clevert, Klaus Obermayer
    posted to affy probesummary by cassj on 2006-04-19 18:46:23 as *** along with 1 person ghattem
  • EXPLORATION, NORMALIZATION, AND GENOTYPE CALLS OF HIGH DENSITY OLIGONUCLEOTIDE SNP ARRAY DATA
    Johns Hopkins University, Dept. of Biostatistics Working Papers., Vol. 111
    posted to no-tag by cassj on 2006-03-17 10:20:57 as ***** along with 655 people and 128 groups fernand0 dperkel egh jyuh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona lijil hlovise coolger incites bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep jjray Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc lyongu ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term duckysherwood madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen aviad_work crusher lucbelanger lauragonzalez Manhal gagliol ashandanj lns cblock trungdong lechristophe ealloza s-adachi rsabouni dhingra corcoted Shii vrv fmiyamae livingthingdan kaz229 Haggan knowlengr aniak krzywy tg Rootfruit ricklillie gracev lrsantos babyone eenauk long pereicoco lieselot yeqiwei amcmorl redelings nojhan mkharito rocarvaj stoev tdpessem briansludwig ttsutsumi wenniehu elsiatcase perhapstoopink atbrew fsteeg digitaldust CDivin whshen andersok fpalm brembs ragha mgran thomaswuebben justaubrey macfreek lilalia azygmunt ddineen miguelbezerra jdiggans sjgaller huminfly thjt shenshei erikwdavis jsvoboda ceegrs2 jared jijkoun slafont mdifranc GregorSuhr jmurdoch mattlee Repton jvrantwijk ible fruminator mkowa fellow tzmtzm samjlord abbyworld aozkan giorgis fluomouse Tellima RiccardoAlbertoni annmarie37 ciriol sstoerge gengh goingsomewhere ruddyconsult MichaelGaebler nco71 Vezhnick fabianhemmert shangnan Fahland lossius adriancooke baikanamako elisaformist jsanpedro oceanflynn imaginaryunit bobturner grahamc nascardaughter shariffdinah ibschwartz srfairclough joepickrell bouchard islandrru hohkhkh1 alchemyst mlewcio irwink henriksdal cychang padraic trshepherd tarjeiha josemblazquez pitzelberger hukkinen toppi sjc garancher_gougeon_reyotero nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm rodney portalqm tkravitz bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar bellia akom kevin7 friveroll khm zetetic karipuf leechuck hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel wongmld jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar yodha Akimasa technical oilpalm spacely j0nes TCgroup RalfMitschke ingedwar Oktoplus stonest cwr jladell rbmoura Leize adjih carpi omidf2 msampson olaf markusd paulschlesinger qwermish librain pkrrules thehajime PeterRabbit paulvb cvq peefeeyatko kinestetika lynleypage truongducthang metaspencer dodger042 jpassoth krokicki tibbitts brianlimyl vogmae doylem nkishan hayko gjhuang ashko buggle bemike cvarnam umurthy21 andregermanoregert Katje midshipman tgyork ivanois toivotuo jnz eegilbert snyder84 idonaldson dandaman awc Thaverkamp mtugrul buchgeher fairy mebiel lectorespa bennettn waszak forestier claudiotubertini acastaner hkreysa AnneB GimpyBee sgclendenon paj prdrieze cortex rschulz aklassen kenneth1ny nschaeff japarejo andreacastelletti schocol hillarpoldmaa kcrawlik ipora yavanna Grobi s-fujii kdesmond bjbecerra LTrottier ziggy talkingpoints linxiang mllee monkare scottkb pantxorama petergun6666 iantunbridge farzanehs murb mpisarenco blackm0k bluecricket mrosenki rsimitev BrianTomasik mfloris adamsi yungyuc schulz iup massimocencini natasjadenouden nickpitman genericg dmmarinlo nikko kericson makbot adenkabe ThomasKluge pdessus Neeperando hrwiltse vrich ranger amydash taenneken CGREL CMU-HCII NU-PRL UoY-CS-AIG Blog_and_Wiki_Research CompetitionLawAndPolicy Tectonics_and_geomorphology NeuronDynamics Context-driven-testers ReadingLab political_science_students kdl distance remote TUCS-ES_Lab Quantum_physics_Education WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns MACLab folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants QFRMC_ConsumerCredit Plant-Tissue-Simulation METRIK Metaheuristics Boydian_Society eLearning BioinfoCIPF Nutritional_Polymorphisms CaltechCMP SEGAL Optimization location SNE kickOffTUG-Robocup NanoMechanicsofMetals_MPIMF Georouting Child_Support Software-Architecture ParkinsonLab_at_MaRS moernerlab ilps livingthing HUCO-627-W07 elearning_research PLE-TEL-project Femtochemistry_LMU ediadem ENSSIBVeille memoir ILK ColDyn ImatiGESemantic AGH-IISG PRC_SEA TCD-NDS102-Project CAOS Adaptive-Web Microbial-Ecology Flexible_ICT-supported_learning Social_Software_ws_07-08 DialogueResearchGroup AM-VideoGames-Gender dIEMoSIRIS microbiology_nijmegen Europe_GPE ZnO_project ADMiRes Health_Sciences_Librarians Desgin-by-Contract MITCCI Kopelman_Group DarkMarkGroup VivesMinions PostureMobility compneur Philosophy of physics PsychStatsBanter Video based Animation for People Social Informatics @ IU
  • ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 765-767.
    by Jonathon Blake, Christian Schwager, Misha Kapushesky, Alvis Brazma
  • Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 692-698.
    by Xiang Shao, Valery Shepelev, Alexei Fedorov
    posted to exon splicing by cassj on 2006-03-17 10:06:05 as ***
  • Ensembl 2006
    Nucleic Acid Research, Vol. 34, No. Database. (1 January 2006), pp. D556-D561.
    by E Birney
    posted to ensembl genome transcriptome by cassj on 2006-01-30 15:25:03 as ***
  • Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
    Nature Structural & Molecular Biology, Vol. 13, No. 1. (20 December 2005), pp. 13-21.
    by Weidong Yang, Thimmaiah P Chendrimada, Qingde Wang, Miyoko Higuchi, Peter H Seeburg, Ramin Shiekhattar, Kazuko Nishikura
  • Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
    Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 1-5.
    by Ken C Pang, Martin C Frith, John S Mattick
  • The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis -- Pearl et al. 33 (Supplement 1): D247 -- Nucleic Acids Research
    Nucleic Acids Research, Vol. 33 (2005), pp. D247-D251.
    by Frances Pearl, Annabel Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony Lewis, Christopher Bennett, Russell Marsden, Alistair Grant, David Lee, Adrian Akpor, Michael Maibaum, Andrew Harrison, Timothy Dallman, Gabrielle Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline Johnston, Antonio Sillero, Janet Thornton, Christine Orengo
    posted to cassj_publications by cassj on 2005-10-25 17:17:31 as read
  • The role of alternative translation start sites in the generation of human protein diversity
    Molecular Genetics and Genomics, Vol. 273, No. 6. (July 2005), pp. 491-496.
    by Alex V Kochetov, Akinori Sarai, Igor B Rogozin, Vladimir K Shumny, Nikolay A Kolchanov
    posted to alternative diversity protein translation by cassj on 2005-08-01 15:35:41 as *** along with 1 person dayjm
  • Regulation of X-Chromosome Counting by Tsix and Xite Sequences
    Science, Vol. 309, No. 5735. (29 July 2005), pp. 768-771.
    by Jeannie T Lee
    posted to antisense tsix x-chromosome by cassj on 2005-08-01 15:15:51 as *****
  • Combined Evidence Annotation of Transposable Elements in Genome Sequences
    PLOS Computational Biology, Vol. 1, e22.
    posted to transcriptome transcriptomics transposons by cassj on 2005-08-01 11:43:04 as ***
  • A high frequency of overlapping gene expression in compacted eukaryotic genomes
    PNAS, Vol. 0501321102
    by BAP Williams, CH Slamovits, NJ Patron, NM Fast, PJ Keeling
    posted to compact eukaryote genomic-organization transcriptome transcriptomics by cassj on 2005-08-01 11:36:21 as ***
  • Genomics: The amazing complexity of the human transcriptome
    European Journal of Human Genetics, Vol. aop, No. current.
    by Martin C Frith, Michael Pheasant, John S Mattick, John S Mattick
    posted to review transcriptome transcriptomics by cassj on 2005-08-01 11:28:09 as *** along with 1 person alexg
  • Multiple sequence alignments of partially coding nucleic acid sequences
    BMC Bioinformatics, Vol. 6 (July 2005), 160.
    by RR Stocsits, IL Hofacker, C Fried, PF Stadler
    posted to sequence_alignment by cassj on 2005-08-01 11:26:08 as **
  • Integrating mRNA processing with transcription.
    Cell, Vol. 108, No. 4. (22 February 2002), pp. 501-512.
    by NJ Proudfoot, A Furger, MJ Dye
    posted to rnapolii transcription_termination transcriptomics_review by cassj on 2005-05-04 12:25:44 as **
  • Terminating transcription in eukaryotes: lessons learned from RNA polymerase I.
    Trends Biochem Sci, Vol. 22, No. 12. (December 1997), pp. 473-477.
    by RH Reeder, WH Lang
    posted to rnapoli transcription_termination transcriptomics_review by cassj on 2005-05-04 12:22:31 as **
  • Functional dissection of RNA polymerase III termination using a peptide nucleic acid as a transcriptional roadblock.
    J Biol Chem, Vol. 279, No. 20. (14 May 2004), pp. 20708-20716.
  • The nucleolus and transcription of ribosomal genes
    Biology of the Cell, Vol. 96, No. 8. (2004), pp. 579-594.
    by Ra$ R 1¡¡ka, K Koberna, J Malínský, H Fidlerová, Ma$ M 1¡¡ata
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit
    RNA, Vol. 9 (2003), pp. 1345-1352.
    by T Schmeing, P Moore, T Steitz
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • MicroRNA BIOGENESIS: COORDINATED CROPPING AND DICING
    Nature Reviews Molecular Cell Biology (2005), pp. 376-385.
    by V Kim
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • C-to-U RNA Editing: Mechanisms Leading to Genetic Diversity
    The Journal of Biological Chemistry, Vol. 273, No. 3. (2002), pp. 1395-1398.
    by V Blanc, N Davidson
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • A-to-I Editing: Recent News and Residual Mysteries
    The Journal of Biological Chemistry, Vol. 278, No. 3. (2002), pp. 1391-1394.
    by S Mass, A Rich, K Nishikura
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression.
    Genome Biology, Vol. 4, No. 7. (2003)
    by D Mangus, M Evans, A Jacobson
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • RNA processing and the evolution of eukaryotes
    Nature Genetics, Vol. 21 (1999), pp. 265-268.
    by A Herbert, A Rich
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • The evolution of controlled multi-tasked gene networks: the role of introns and other non-coding RNAs in the development of complex organsisms.
    Molecular Biology of Evolution, Vol. 18 (2001), pp. 1611-1630.
    by J Mattick, M Gagen
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms
    BioEssays, Vol. 25 (2003), pp. 930-939.
    by J Mattick
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • RNA hairpins in non-coding regions of human brain and caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA
    Procedures of the National Academy of Science, Vol. 99 (2002), pp. 7906-7911.
    by D Morse, P Aruscavage, B Bass
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • siRNA and miRNA: an insight into RISCs
    Trends in Biochemical Sciences, Vol. 30, No. 2. (2005), pp. 106-114.
    by G Tang
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • tRNA transfers to the limelight
    Genes and Development, Vol. 17, No. 2. (2003), pp. 162-180.
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
  • Regulation of serotonin-2C receptor G protein coupling by RNA editing
    Nature, Vol. 387 (1997), pp. 303-308.
    by C Burns, H Chu, S Rueter, L Hutchinson, H Canton, Sandersd S Bush, R Emeson
    posted to transcriptomics_review by cassj on 2005-05-03 15:13:17 as **
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