Регистрация | Вход в службу | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

chad_davis library [679 articles]

Статьи, недавно добавленные в библиотеку chad_davis .
  • MSDmotif: exploring protein sites and motifs
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Adel Golovin, Kim Henrick
    posted to web_service structure embl drug data_integration database complexes binding algorithm by chad_davis on 2008-07-17 16:18:19 as **** along with 2 people massivemayhem reyez
  • The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
    BMC Bioinformatics, Vol. 8 (19 November 2007), 456.
    by Christopher J Bare, Paul T Shannon, Amy K Schmid, Nitin S Baliga
    posted to web_service text_mining download data_integration by chad_davis on 2008-07-16 17:31:02 as *** along with 7 people and 1 group selatham jyuh jfr dullhunk neils ryanraaum mircea NCCT Lab Reading Group
  • The Gaggle: an open-source software system for integrating bioinformatics software and data sources.
    BMC Bioinformatics, Vol. 7 (2006)
    by PT Shannon, DJ Reiss, R Bonneau, NS Baliga
    posted to toolkit download data_integration by chad_davis on 2008-07-16 17:26:58 as ** along with 8 people and 2 groups jyuh julius dullhunk frohike jmuhlich cerami pablomendes waszak SysbioMPI-TCells SorgerLab
  • notes Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to networks download clustering algorithm by chad_davis on 2008-07-16 16:18:57 as ** along with 14 people and 1 group lptolik MatthiasReimann jmuhlich AbnerCYH royerloic tmmurali stajich renatomilani askrajiv Borelli nuin reyez kengg Ema Berkeley Mycology
  • iTools: a framework for classification, categorization and integration of computational biology resources.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by ID Dinov, D Rubin, W Lorensen, J Dugan, J Ma, S Murphy, B Kirschner, W Bug, M Sherman, A Floratos, D Kennedy, HV Jagadish, J Schmidt, B Athey, A Califano, M Musen, R Altman, R Kikinis, I Kohane, S Delp, DS Parker, AW Toga
    posted to web_service toolkit download data_integration by chad_davis on 2008-07-15 12:55:47 as *** along with 2 people jyuh dullhunk
  • Peptide-mediated interactions in biological systems: new discoveries and applications.
    Current opinion in biotechnology (1 July 2008)
    by Evangelia Petsalaki, Robert B B Russell
    posted to structure review embl binding by chad_davis on 2008-07-14 12:54:41 as *****
  • notes Inference of macromolecular assemblies from crystalline state.
    J Mol Biol, Vol. 372, No. 3. (21 September 2007), pp. 774-797.
    by E Krissinel, K Henrick
    posted to web_service validation structure proj_assembly embl database complexes binding annotation algorithm by chad_davis on 2008-07-13 16:28:44 as **** along with 1 person bicko
  • The social network of a cell: Recent advances in interactome mapping.
    Biotechnology annual review, Vol. 14 (2008), pp. 1-28.
    by S Charbonnier, O Gallego, AC Gavin
    posted to review proj_assembly networks embl data_integration by chad_davis on 2008-07-09 19:38:51 as ****
  • A unified approach to false discovery rate estimation
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Korbinian Strimmer
    posted to validation statistics proj_credo download classification algorithm by chad_davis on 2008-07-09 14:56:45 as *** along with 4 people shigepong joaocarrico nuin barriot
  • Exploring the structure and function paradigm
    Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 394-402.
    by Oliver C Redfern, Benoit Dessailly, Christine A Orengo
    posted to structure review evolution classification annotation algorithm by chad_davis on 2008-07-09 14:50:49 as *** along with 2 people marck paulschlesinger
  • Tubulin and FtsZ structures: functional and therapeutic implications.
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 20, No. 7. (July 1998), pp. 523-527.
    by A Desai, TJ Mitchison
    posted to structure review mycoplasma evolution drug disease by chad_davis on 2008-07-08 13:34:13 as read
  • notes Bacterial cell division protein FtsZ assembles into protofilament sheets and minirings, structural homologs of tubulin polymers.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 1. (9 January 1996), pp. 519-523.
    by HP Erickson, DW Taylor, KA Taylor, D Bramhill
    posted to structure proj_assembly mycoplasma complexes binding by chad_davis on 2008-07-07 16:07:55 as read
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia G Canut, Luis Serrano
    posted to proj_mol_evo networks gene_regulation evolution embl by chad_davis on 2008-07-07 12:11:29 as read along with 17 people and 4 groups aheilbut michaelbarton austin AbnerCYH hryk margaritis cactus dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid BergmanLab SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins.
    Journal of molecular biology (7 June 2008)
    by Qifang Xu, Adrian AA Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland LL Dunbrack
    posted to validation structure proj_interprets evolution data_integration database complexes binding by chad_davis on 2008-07-06 20:22:42 as ***** along with 1 person kintoki
  • notes Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577.
    by Gz Hertz, Gd Stormo
    posted to statistics proj_credo gene_regulation download alignment algorithm by chad_davis on 2008-07-06 17:25:57 as read along with 4 people and 1 group tuck indigoviolet dquest lusk EisenLab
  • POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14.
    by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch
    posted to proj_disocons proj_credo ensemble classification algorithm by chad_davis on 2008-07-05 16:29:44 as read
  • Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i41-49.
    by Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial
    posted to evolution download clustering algorithm by chad_davis on 2008-07-05 16:26:30 as ** along with 1 person sconlan
  • Designing succinct structural alphabets
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i182-189.
    by Shuai C Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li
    posted to structure proj_assembly feature_selection chemistry annotation alignment algorithm by chad_davis on 2008-07-05 16:11:37 as *** along with 1 person marck
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231.
    by Marcus T Dittrich, Gunnar W Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller
    posted to proj_assembly networks clustering binding algorithm by chad_davis on 2008-07-05 16:07:16 as ** along with 2 people marck renatomilani
  • BLASTing small molecules--statistics and extreme statistics of chemical similarity scores
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i357-365.
    by Pierre Baldi, Ryan W Benz
    posted to statistics drug chemistry algorithm by chad_davis on 2008-07-05 15:44:56 as ** along with 3 people Yoyek girschick dullhunk
  • Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.
    Nucleic acids research, Vol. 28, No. 17. (1 September 2000), pp. 3278-3288.
    by T Dandekar, M Huynen, JT Regula, B Ueberle, CU Zimmermann, MA Andrade, T Doerks, Sánchez L Pulido, B Snel, M Suyama, YP Yuan, R Herrmann, P Bork
    posted to mycoplasma embl classic annotation by chad_davis on 2008-07-04 11:09:46 as ** along with 2 people shana operon
  • Open source clustering software.
    Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1453-1454.
    by MJ de Hoon, S Imoto, J Nolan, S Miyano
    posted to toolkit download clustering algorithm by chad_davis on 2008-07-04 09:28:18 as ** along with 16 people and 6 groups macowell davidbroadhurst eme oilcan rahul Ayest balajis piscinero metamerist digisoki wnpx rafamayo atopcu ccr calu karlmicha Fluid-Mechanics-and-Thermal-Science-Research astro SRL Computational_Systems_Biology XMLDataManagement BUiGEM
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to evolution complexes classic binding by chad_davis on 2008-07-03 11:34:15 as ** along with 19 people dragonrez Evangelia balicea marck paolomarcatili sanchezbuelna cabbagesofdoom xingxu mjoach jyuh chrissp100 zwang roys brianb friendpine Ema neils tmmurali phoenixzxl
  • Alignment of non-covalent interactions at protein-protein interfaces.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by H Zhu, I Sommer, T Lengauer, FS Domingues
    posted to structure proj_interprets feature_selection binding alignment algorithm by chad_davis on 2008-07-03 09:46:49 as ***** along with 2 people bicko marck
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to structure proj_interprets evolution docking complexes binding algorithm by chad_davis on 2008-07-02 18:10:32 as ***** along with 3 people bicko phoenixzxl cabbagesofdoom
  • PageRank without hyperlinks: reranking with PubMed related article networks for biomedical text retrieval
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jimmy Lin
    posted to text_mining networks algorithm by chad_davis on 2008-07-02 16:32:22 as ** along with 8 people and 1 group jyuh irenas reyez msampson dullhunk Gaetan neils sobolevnrm baker-group
  • PSIbase: a database of Protein Structural Interactome map (PSIMAP)
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2541-2543.
    by Sungsam Gong, Giseok Yoon, Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
    posted to web_service structure proj_assembly database binding algorithm by chad_davis on 2008-07-01 14:43:04 as ***** along with 1 person medic0747
  • Protein complex identification by supervised graph local clustering
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i250-268.
    by Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith K Seetharaman, Ziv B Joseph
    posted to proj_assembly networks download complexes clustering algorithm by chad_davis on 2008-07-01 12:09:55 as *** along with 1 person neils
  • A robust approach for analyzing a heterogeneous structural ensemble
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by David F Lowry, Andrew C Hausrath, Gary W Daughdrill
    posted to structure proj_disocons evolution disorder complexes clustering algorithm by chad_davis on 2008-07-01 12:08:08 as ***
  • The role of disorder in interaction networks: a structural analysis
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein
    posted to yeast structure proj_disocons networks disorder binding by chad_davis on 2008-06-30 10:59:42 as **** along with 5 people zwang bootsy biomcgary maralena phoenixzxl
  • Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    International journal of biological macromolecules (21 May 2008)
    by Petras JJ Kundrotas, Marc FF Lensink, Emil Alexov
    posted to structure proj_assembly modelling data_integration complexes binding alignment algorithm by chad_davis on 2008-06-29 11:15:36 as ** along with 1 group structural_bioinformatics
  • Using indirect protein-protein interactions for protein complex prediction.
    Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 435-466.
    by HN Chua, K Ning, WK Sung, HW Leong, L Wong
    posted to proj_assembly networks complexes clustering binding algorithm by chad_davis on 2008-06-29 11:14:25 as ****
  • Intrinsic disorder prediction from the analysis of multiple protein fold recognition models.
    Bioinformatics (Oxford, England) (25 June 2008)
    by Liam JJ Mcguffin
    posted to web_service structure proj_disocons feature_selection ensemble disorder data_integration classification algorithm by chad_davis on 2008-06-29 10:59:50 as *****
  • Intrinsically Disordered Proteins in Human Diseases: Introducing the D(2) Concept.
    Annual review of biophysics, Vol. 37 (9 June 2008), pp. 215-246.
    by Vladimir NN Uversky, Christopher JJ Oldfield, Keith
    posted to structure review proj_disocons gene_regulation disorder disease binding by chad_davis on 2008-06-29 10:56:16 as ***
  • Simple fold composition and modular architecture of the nuclear pore complex.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 7. (14 February 2006), pp. 2172-2177.
    by D Devos, S Dokudovskaya, R Williams, F Alber, N Eswar, BT Chait, MP Rout, A Sali
    posted to structure modelling evolution embl complexes by chad_davis on 2008-06-27 14:31:05 as ***
  • Discovering Motifs in Ranked Lists of DNA Sequences
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39.
    by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini
    posted to yeast statistics proj_credo gene_regulation algorithm by chad_davis on 2008-06-26 08:21:09 as **** along with 3 people and 1 group dpollard dquest yevishere EisenLab
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to web_service data_integration annotation by chad_davis on 2008-06-22 20:16:44 as *** along with 12 people and 1 group ChrisEvelo sjc fpattyn Katje jamselem yas renatomilani dullhunk tharris thomaskelder AlexanderPico neils microbiology_nijmegen
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by R Linding, LJ Jensen, GJ Ostheimer, MA van Vugt, C Jørgensen, IM Miron, F Diella, K Colwill, L Taylor, K Elder, P Metalnikov, V Nguyen, A Pasculescu, J Jin, JG Park, LD Samson, JR Woodgett, RB Russell, P Bork, MB Yaffe, T Pawson
    posted to networks embl data_integration binding algorithm by chad_davis on 2008-06-20 11:13:19 as **** along with 14 people and 2 groups carlk daed Evangelia renatomilani jyuh skhadar julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen SysbioMPI-TCells Durbin group
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to validation evolution embl classic alignment algorithm by chad_davis on 2008-06-20 11:03:06 as *** along with 18 people and 1 group AbnerCYH michaelbarton bpcusack bmaust gulsacan Schmidtc bpb zwang aprasad imtechnology marck ArtemPankin djkt gjuggler hpaces dinnes jago phoenixzxl Khavkin's lab
  • Alternative splicing and protein structure evolution.
    Nucleic Acids Res, Vol. 36, No. 2. (February 2008), pp. 550-558.
    by F Birzele, G Csaba, R Zimmer
    posted to structure proj_mol_evo gene_regulation evolution annotation by chad_davis on 2008-06-18 12:00:48 as read along with 1 person bootsy
  • Reconstruction of protein backbones from the BriX collection of canonical protein fragments.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by L Baeten, J Reumers, V Tur, F Stricher, T Lenaerts, L Serrano, F Rousseau, J Schymkowitz
    posted to structure non-redundant database algorithm by chad_davis on 2008-06-17 16:53:00 as ***
  • Intrinsic protein disorder in complete genomes.
    Genome informatics. Workshop on Genome Informatics, Vol. 11 (2000), pp. 161-171.
    by AK Dunker, Z Obradovic, P Romero, EC Garner, CJ Brown
    posted to structure review proj_disocons disorder annotation by chad_davis on 2008-06-17 16:47:01 as **** along with 1 person allmensch
  • Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Juliette Martin, Leslie Regad, Catherine Etchebest, Anne C Camproux
    posted to structure statistics proj_interprets proj_assembly feature_selection complexes binding algorithm by chad_davis on 2008-06-15 13:54:46 as *****
  • Role of intrinsic disorder in transient interactions of hub proteins.
    Proteins, Vol. 66, No. 4. (1 March 2007), pp. 761-765.
    by GP Singh, M Ganapathi, D Dash
    posted to proj_disocons networks disorder complexes binding by chad_davis on 2008-06-15 13:40:59 as ****
  • Eukaryotic transcription factor binding sites - modeling and integrative search methods
    Bioinformatics (21 April 2008), btn198.
    by Sridhar Hannenhalli
    posted to review proj_credo gene_regulation binding by chad_davis on 2008-06-15 13:35:43 as **** along with 7 people heliopais jyuh sameetmehta Ema bootsy maximilianh hplatero
  • URL decay in MEDLINE - a 4-year follow-up study
    Bioinformatics (15 April 2008), btn127.
    by Jonathan D Wren
    posted to review by chad_davis on 2008-06-15 13:24:20 as ** along with 4 people lmichan hpiwowar wisdom_love Gaetan
  • MedEvi: Retrieving textual evidence of relations between biomedical concepts from Medline.
    Bioinformatics (Oxford, England) (9 April 2008)
    by Jung, Piotr Pezik, Dietrich R Schuhmann
    posted to web_service text_mining embl algorithm by chad_davis on 2008-06-15 13:11:16 as ** along with 3 people jyuh dullhunk Gaetan
  • Understanding eukaryotic linear motifs and their role in cell signaling and regulation.
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 6580-6603.
    by F Diella, N Haslam, C Chica, A Budd, S Michael, NP Brown, G Trave, TJ Gibson
    posted to review embl disorder binding by chad_davis on 2008-06-01 12:04:07 as **** along with 1 person cabbagesofdoom
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
    posted to yeast experimental classic annotation by chad_davis on 2008-05-30 13:31:01 as ** along with 11 people and 1 group mapplab GeeSharpMinor urgi faion semrich biomcgary djkt Retchless gjuggler caseybrown stajich Berkeley Mycology
  • Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy.
    Journal of structural biology, Vol. 149, No. 2. (February 2005), pp. 191-203.
    by M Topf, ML Baker, B John, W Chiu, A Sali
    posted to structure proj_assembly modelling data_integration complexes alignment algorithm by chad_davis on 2008-05-28 10:37:06 as ** along with 1 group structural_bioinformatics
    • Вы можете ссылаться на эту страницу по адресу: http://www.citeulike.org/user/chad_davis

    Result page: 1 2 3 4 5 6 7 8 9 10 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.