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cjeans database [43 articles]

Recent papers added to cjeans library classified by the tag database. You can also see everyone's database.
  • Pathway Databases: A Case Study in Computational Symbolic Theories
    Science, Vol. 293, No. 5537. (14 September 2001), pp. 2040-2044.
    by Peter D Karp
    posted to database pathway by cjeans on 2007-12-30 03:42:39 as ** along with 1 person dullhunk
  • GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    Bioinformatics, Vol. 20, No. 18., 3710.
    by Elizabeth I Boyle, Shuai Weng, Jeremy Gollub, Heng Jin, David Botstein, Michael M Cherry, Gavin Sherlock
    posted to database go by cjeans on 2007-12-17 03:39:48 as ** along with 3 people roys macavity1g kintoki
  • Roundup: a multi-genome repository of orthologs and evolutionary distances
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 2044-2046.
    by Todd F Deluca, I-Hsien Wu, Jian Pu, Thomas Monaghan, Leonid Peshkin, Saurav Singh, Dennis P Wall
    posted to database ortholog by cjeans on 2007-12-08 06:38:13 as ** along with 3 people and 1 group operon indigoviolet ninch EisenLab
  • GPCRDB: an information system for G protein-coupled receptors
    Nucl. Acids Res., Vol. 26, No. 1. (1 January 1998), pp. 275-279.
    by F Horn, J Weare, Mw Beukers, S Horsch, A Bairoch, W Chen, O Edvardsen, F Campagne, G Vriend
    posted to database by cjeans on 2007-12-01 08:20:07 as ** along with 1 person nigham
  • EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information.
    Nucleic Acids Res (5 November 2007)
    by Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li
    posted to database paralog by cjeans on 2007-11-25 09:47:15 as ** along with 2 people ninch jyuh
  • A comparison of SCOP and CATH with respect to domain-domain interactions.
    Proteins (16 July 2007)
    by Emily R R Jefferson, Thomas P P Walsh, Geoffrey J J Barton
    posted to database ddi domain by cjeans on 2007-11-12 08:32:47 as **
  • Protein sequence databases.
    Curr Opin Chem Biol, Vol. 8, No. 1. (February 2004), pp. 76-80.
    by R Apweiler, A Bairoch, CH Wu
    posted to database protein sequence by cjeans on 2007-11-12 08:00:13 as **
  • UniProt archive.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3236-3237.
    by R Leinonen, FG Diez, D Binns, W Fleischmann, R Lopez, R Apweiler
    posted to database protein sequence by cjeans on 2007-11-12 07:58:54 as ** along with 1 person alanrw
  • UniProt: the Universal Protein knowledgebase.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by R Apweiler, A Bairoch, CH Wu, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, DA Natale, C O'Donovan, N Redaschi, LS Yeh
    posted to database protein sequence by cjeans on 2007-11-12 07:58:09 as ** along with 4 people dullhunk leelarcombe gisle PunkRock
  • The Universal Protein Resource (UniProt).
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by A Bairoch, R Apweiler, CH Wu, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, DA Natale, C O'Donovan, N Redaschi, LS Yeh
    posted to database protein sequence by cjeans on 2007-11-12 07:57:15 as ** along with 7 people Cortel kuhn dullhunk fisherp happy_manatee myui incovoma
  • Plant protein annotation in the UniProt Knowledgebase.
    Plant Physiol, Vol. 138, No. 1. (May 2005), pp. 59-66.
    by M Schneider, A Bairoch, CH Wu, R Apweiler
    posted to database plant protein sequence by cjeans on 2007-11-12 07:55:55 as **
  • The Universal Protein Resource (UniProt): an expanding universe of protein information.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by CH Wu, R Apweiler, A Bairoch, DA Natale, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, R Mazumder, C O'Donovan, N Redaschi, B Suzek
    posted to database protein sequence by cjeans on 2007-11-12 07:54:50 as ** along with 6 people BragilMassoud miguel anwazo dgront Haggan cdallett
  • The Universal Protein Resource (UniProt).
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by
    posted to database protein sequence by cjeans on 2007-11-12 07:50:47 as ** along with 7 people sgoetz saunders sim82 jyuh dullhunk CitoJam massivemayhem
  • ProDom: automated clustering of homologous domains.
    Brief Bioinform, Vol. 3, No. 3. (September 2002), pp. 246-251.
    by F Servant, C Bru, S Carrère, E Courcelle, J Gouzy, D Peyruc, D Kahn
    posted to database domain by cjeans on 2007-11-12 01:10:10 as ** along with 1 person Cortel
  • Recent improvements of the ProDom database of protein domain families.
    Nucleic Acids Res, Vol. 27, No. 1. (1 January 1999), pp. 263-267.
    by F Corpet, J Gouzy, D Kahn
    posted to database domain by cjeans on 2007-11-12 01:08:32 as **
  • The ProDom database of protein domain families.
    Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 323-326.
    by F Corpet, J Gouzy, D Kahn
    posted to database domain by cjeans on 2007-11-12 01:06:48 as **
  • The ProDom database of protein domain families: more emphasis on 3D.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C Bru, E Courcelle, S Carrère, Y Beausse, S Dalmar, D Kahn
    posted to database domain by cjeans on 2007-11-12 01:05:28 as ** along with 1 person siebertm
  • ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 267-269.
    by F Corpet, F Servant, J Gouzy, D Kahn
    posted to database domain sequence by cjeans on 2007-11-12 01:02:50 as **
  • The SUPERFAMILY database in 2004: additions and improvements.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Madera, C Vogel, SK Kummerfeld, C Chothia, J Gough
    posted to database domain hmm structure by cjeans on 2007-11-11 11:19:15 as ** along with 1 person Cortel
  • SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 268-272.
    by J Gough, C Chothia
    posted to database domain hmm structure by cjeans on 2007-11-11 11:18:56 as **
  • The SUPERFAMILY database in structural genomics.
    Acta Crystallogr D Biol Crystallogr, Vol. 58, No. Pt 11. (November 2002), pp. 1897-1900.
    by J Gough
    posted to database domain hmm structure by cjeans on 2007-11-11 11:15:44 as **
  • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
    J Mol Biol, Vol. 313, No. 4. (2 November 2001), pp. 903-919.
    by J Gough, K Karplus, R Hughey, C Chothia
    posted to database domain hmm by cjeans on 2007-11-11 11:14:50 as **
  • SCOP database in 2002: refinements accommodate structural genomics.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 264-267.
    by L Lo Conte, SE Brenner, TJ Hubbard, C Chothia, AG Murzin
    posted to database domain structure by cjeans on 2007-11-08 11:56:30 as ** along with 2 people tjimenez dimka
  • SCOP: a structural classification of proteins database.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 257-259.
    by L Lo Conte, B Ailey, TJ Hubbard, SE Brenner, AG Murzin, C Chothia
    posted to database domain structure by cjeans on 2007-11-08 11:55:59 as ** along with 2 people tjimenez dimka
  • A systematic comparison of protein structure classifications: SCOP, CATH and FSSP.
    Structure Fold Des, Vol. 7, No. 9. (15 September 1999), pp. 1099-1112.
    by C Hadley, DT Jones
    posted to database domain structure by cjeans on 2007-11-08 11:55:13 as ** along with 2 people and 2 groups ana chad_davis structural_bioinformatics Bioinformatics
  • SCOP: a Structural Classification of Proteins database.
    Nucleic Acids Res, Vol. 27, No. 1. (1 January 1999), pp. 254-256.
    by TJ Hubbard, B Ailey, SE Brenner, AG Murzin, C Chothia
    posted to database domain structure by cjeans on 2007-11-08 11:52:41 as ** along with 1 person bicko
  • SCOP: a structural classification of proteins database.
    Nucleic Acids Res, Vol. 25, No. 1. (1 January 1997), pp. 236-239.
    by TJ Hubbard, AG Murzin, SE Brenner, C Chothia
    posted to database domain structure by cjeans on 2007-11-08 11:50:48 as ** along with 2 people iakes rabio
  • SCOP: a structural classification of proteins database for the investigation of sequences and structures.
    J Mol Biol, Vol. 247, No. 4. (7 April 1995), pp. 536-540.
    by AG Murzin, SE Brenner, T Hubbard, C Chothia
    posted to database domain structure by cjeans on 2007-11-08 11:49:09 as ** along with 9 people sim82 dimka chrn chad_davis j3xucite sriram_s aengisch massivemayhem siebertm
  • Exploring protein domain structure.
    Brief Bioinform, Vol. 1, No. 3. (September 2000), pp. 305-312.
    by JC Ison
    posted to database domain structure by cjeans on 2007-11-08 11:48:44 as **
  • CD-Search: protein domain annotations on the fly.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by A Marchler-Bauer, SH Bryant
    posted to database domain sequence by cjeans on 2007-11-08 08:28:30 as **
  • CDD: a curated Entrez database of conserved domain alignments.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 383-387.
    by A Marchler-Bauer, JB Anderson, C DeWeese-Scott, ND Fedorova, LY Geer, S He, DI Hurwitz, JD Jackson, AR Jacobs, CJ Lanczycki, CA Liebert, C Liu, T Madej, GH Marchler, R Mazumder, AN Nikolskaya, AR Panchenko, BS Rao, BA Shoemaker, V Simonyan, JS Song, PA Thiessen, S Vasudevan, Y Wang, RA Yamashita, JJ Yin, SH Bryant
    posted to database domain sequence by cjeans on 2007-11-08 08:27:41 as ** along with 3 people jteyra balajis maryee
  • CDD: a database of conserved domain alignments with links to domain three-dimensional structure
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 281-283.
    by Aron Marchler-Bauer, Anna R Panchenko, Benjamin A Shoemaker, Paul A Thiessen, Lewis Y Geer, Stephen H Bryant
    posted to database domain by cjeans on 2007-11-08 08:26:25 as ** along with 2 people sriram_s Evangelia
  • CDD: a Conserved Domain Database for protein classification.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by A Marchler-Bauer, JB Anderson, PF Cherukuri, C DeWeese-Scott, LY Geer, M Gwadz, S He, DI Hurwitz, JD Jackson, Z Ke, CJ Lanczycki, CA Liebert, C Liu, F Lu, GH Marchler, M Mullokandov, BA Shoemaker, V Simonyan, JS Song, PA Thiessen, RA Yamashita, JJ Yin, D Zhang, SH Bryant
    posted to database domain by cjeans on 2007-11-08 08:26:11 as ** along with 2 people rabio balajis
  • Pfam: multiple sequence alignments and HMM-profiles of protein domains.
    Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 320-322.
    by EL Sonnhammer, SR Eddy, E Birney, A Bateman, R Durbin
    posted to database domain by cjeans on 2007-11-08 03:10:47 as ** along with 2 people jteyra antonkratz
  • Pfam: a comprehensive database of protein domain families based on seed alignments.
    Proteins, Vol. 28, No. 3. (July 1997), pp. 405-420.
    by EL Sonnhammer, SR Eddy, R Durbin
    posted to database domain by cjeans on 2007-11-08 03:09:14 as ** along with 4 people marti ca3295 pcahan1 antonkratz
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 32 Database issue (1 January 2004)
    by A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths-Jones, A Khanna, M Marshall, S Moxon, EL Sonnhammer, DJ Studholme, C Yeats, SR Eddy
    posted to database domain by cjeans on 2007-11-08 03:08:45 as ** along with 4 people LeightonP ziquje chad_davis wenhan
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 276-280.
    by A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, S Griffiths-Jones, KL Howe, M Marshall, EL Sonnhammer
    posted to database domain by cjeans on 2007-11-08 03:05:20 as ** along with 7 people bandrewfox ziquje Cortel mirzazadeh wenhan antonkratz IrinaMoreira
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 263-266.
    by A Bateman, E Birney, R Durbin, SR Eddy, KL Howe, EL Sonnhammer
    posted to database domain by cjeans on 2007-11-08 03:05:08 as **
  • Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
    Nucleic Acids Res, Vol. 27, No. 1. (1 January 1999), pp. 260-262.
    by A Bateman, E Birney, R Durbin, SR Eddy, RD Finn, EL Sonnhammer
    posted to database domain by cjeans on 2007-11-08 03:04:28 as **
  • CDART: protein homology by domain architecture.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1619-1623.
    by LY Geer, M Domrachev, DJ Lipman, SH Bryant
    posted to database domain sequence by cjeans on 2007-11-07 13:44:44 as ** along with 2 people mcox imouthesmp
  • The FSSP database of structurally aligned protein fold families.
    Nucleic Acids Res, Vol. 22, No. 17. (September 1994), pp. 3600-3609.
    by L Holm, C Sander
    posted to database domain structure by cjeans on 2007-11-07 13:35:55 as **
  • The ASTRAL compendium for protein structure and sequence analysis.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 254-256.
    by SE Brenner, P Koehl, M Levitt
    posted to database domain sequence by cjeans on 2007-11-07 13:35:16 as ** along with 2 people rabio siebertm
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, T Lassmann, S Moxon, M Marshall, A Khanna, R Durbin, SR Eddy, EL Sonnhammer, A Bateman
    posted to database domain by cjeans on 2007-11-07 13:32:49 as read along with 10 people Lombardo_7 phoenixzxl natstreet gbart dullhunk massivemayhem siebertm lpfernandes pablomendes antonkratz
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