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cjeans domain [82 articles]

Recent papers added to cjeans library classified by the tag domain. You can also see everyone's domain.
  • Reassessing a sparse energetic network within a single protein domain
    Proceedings of the National Academy of Sciences (13 March 2008), 0711732105.
    by Celestine N Chi, Lisa Elfstrom, Yao Shi, Tord Snall, Ake Engstrom, Per Jemth
    posted to coevolution correlated-mutation domain sca by cjeans on 2008-03-15 01:26:36 as ** along with 4 people and 1 group sobolevnrm apaydin cactus sunhwan baker-group
  • Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits.
    Annu Rev Biochem (17 March 2006)
    by Roby P P Bhattacharyya, Attila Reményi, Brian J J Yeh, Wendell A A Lim
    posted to domain signaling by cjeans on 2008-01-29 02:46:16 as ** along with 7 people carlk rklancer matzke imouthesmp choonpeng koller melting
  • Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems.
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 191-203.
    by T Pawson
    posted to domain sh2 signaling by cjeans on 2008-01-29 02:44:20 as **
  • Oncogenic re-wiring of cellular signaling pathways
    Oncogene, Vol. 26, No. 9. (0000), pp. 1268-1275.
    by T Pawson, N Warner
    posted to domain signaling by cjeans on 2008-01-29 02:43:24 as **
  • Reading protein modifications with interaction domains
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 7., pp. 473-483.
    by Bruce T Seet, Ivan Dikic, Ming-Ming Zhou, Tony Pawson
    posted to domain modification post-translation by cjeans on 2008-01-23 08:13:26 as ** along with 3 people laurabailey choonpeng mingzhi
  • Dynamic control of signaling by modular adaptor proteins
    Current Opinion in Cell Biology, Vol. In Press, Corrected Proof
    by Tony Pawson
    posted to domain by cjeans on 2008-01-23 07:54:48 as ** along with 2 people choonpeng heb
  • Ubiquitin-binding domains
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 8. (01 August 2005), pp. 610-621.
    by Linda Hicke, Heidi L Schubert, Christopher P Hill
    posted to domain modification post-translation ubiquitin by cjeans on 2008-01-23 01:55:14 as ** along with 1 person laurabailey
  • Mapping dynamic protein interactions in MAP kinase signaling using live-cell fluorescence fluctuation spectroscopy and imaging
    Proceedings of the National Academy of Sciences (12 December 2007), 0710336105.
    by Brian D Slaughter, Joel W Schwartz, Rong Li
    posted to domain experiment sample by cjeans on 2007-12-14 00:24:07 as **
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to domain ppi structure by cjeans on 2007-12-08 06:40:10 as ** along with 9 people carlk bicko chad_davis choonpeng grahamc zwang niallhaslam biehl marti
  • Reciprocal domain evolution within a transactivator in a restricted sequence space.
    Proc Natl Acad Sci U S A, Vol. 97, No. 7. (28 March 2000), pp. 3314-3318.
    by K Juarez, H Flores, S Dávila, L Olvera, V González, E Morett
    posted to coevolution domain by cjeans on 2007-12-03 02:28:36 as **
  • Use of covariance analysis for the prediction of structural domain boundaries from multiple protein sequence alignments
    Protein Eng., Vol. 15, No. 2. (1 February 2002), pp. 65-77.
    by Daniel J Rigden
    posted to correlated-mutation domain msa by cjeans on 2007-12-01 07:58:56 as **
  • An enquiry into metabolite domains.
    Biophys J, Vol. 92, No. 11. (1 June 2007), pp. 3878-3884.
    by LF Barros, C Martínez
    posted to domain by cjeans on 2007-12-01 07:03:52 as ** along with 1 person andreas_foersch
  • Inferring functional information from domain co-evolution.
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 40-49.
    by Y Kim, M Koyutürk, U Topkara, A Grama, S Subramaniam
    posted to domain coevolution by cjeans on 2007-11-26 06:18:10 as ** along with 1 person balajis
  • An insight into domain combinations.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by G Apic, J Gough, SA Teichmann
    posted to domain evolution by cjeans on 2007-11-26 02:30:40 as ** along with 1 person choonpeng
  • Structure, function and evolution of multidomain proteins.
    Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 208-216.
    by C Vogel, M Bashton, ND Kerrison, C Chothia, SA Teichmann
    posted to domain evolution structure by cjeans on 2007-11-26 02:30:13 as ** along with 3 people and 1 group Einat Schmidtc cmzmasek structural_bioinformatics
  • The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins.
    Structure, Vol. 12, No. 6. (June 2004), pp. 917-925.
    by J Gough, C Chothia
    posted to domain evolution by cjeans on 2007-11-26 02:29:50 as ** along with 1 person and 1 group Einat structural_bioinformatics
  • The Relationship Between Domain Duplication and Recombination
    Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365.
    by Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal
    posted to domain evolution by cjeans on 2007-11-26 02:29:29 as ** along with 5 people and 4 groups ana marcius tny martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Relative rates of gene fusion and fission in multi-domain proteins.
    Trends Genet, Vol. 21, No. 1. (January 2005), pp. 25-30.
    by SK Kummerfeld, SA Teichmann
    posted to domain evolution by cjeans on 2007-11-26 02:29:14 as ** along with 1 person mingzhi
  • The evolution of domain arrangements in proteins and interaction networks.
    Cell Mol Life Sci, Vol. 62, No. 4. (February 2005), pp. 435-445.
    by E Bornberg-Bauer, F Beaussart, SK Kummerfeld, SA Teichmann, J Weiner
    posted to domain evolution by cjeans on 2007-11-26 02:28:57 as ** along with 2 people choonpeng cmzmasek
  • The properties of protein family space depend on experimental design
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2618-2622.
    by Victor Kunin, Sarah A Teichmann, Martijn A Huynen, Christos A Ouzounis
    posted to domain evolution structure by cjeans on 2007-11-26 02:28:37 as ** along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
  • Novel specificities emerge by stepwise duplication of functional modules.
    Genome Res, Vol. 15, No. 4. (April 2005), pp. 552-559.
    by JB Pereira-Leal, SA Teichmann
    posted to domain evolution by cjeans on 2007-11-25 10:50:45 as ** along with 3 people ushishir tny choonpeng
  • Searchlight on domains.
    Structure, Vol. 15, No. 1. (January 2007), pp. 1-2.
    by M Riley
    posted to domain function by cjeans on 2007-11-25 10:48:53 as ** along with 2 people tny mblwhoi
  • Swaps in protein sequences.
    Proteins, Vol. 48, No. 2. (1 August 2002), pp. 377-387.
    by A Fliess, B Motro, R Unger
    posted to domain evolution by cjeans on 2007-11-25 10:38:52 as ** along with 1 person Schmidtc
  • Protein building blocks preserved by recombination.
    Nat Struct Biol, Vol. 9, No. 7. (July 2002), pp. 553-558.
    by CA Voigt, C Martinez, ZG Wang, SL Mayo, FH Arnold
    posted to domain evolution ppi by cjeans on 2007-11-25 10:37:11 as ** along with 1 person and 1 group allPowerde The_Festival_of_Doubt
  • PreSPI: a domain combination based prediction system for protein-protein interaction.
    Nucleic Acids Res, Vol. 32, No. 21. (2004), pp. 6312-6320.
    by DS Han, HS Kim, WH Jang, SD Lee, JK Suh
    posted to ddi domain ppi by cjeans on 2007-11-25 10:33:45 as **
  • Quantification of the elevated rate of domain rearrangements in metazoa.
    J Mol Biol, Vol. 372, No. 5. (5 October 2007), pp. 1337-1348.
    by D Ekman, AK Björklund, A Elofsson
    posted to domain evolution by cjeans on 2007-11-25 09:46:53 as ** along with 1 person kluck
  • Evolutionary history and functional implications of protein domains and their combinations in eukaryotes
    Genome Biology, Vol. 8 (25 June 2007), R121.
    by Masumi Itoh, Jose C Nacher, Kei-Ichi Kuma, Susumu Goto, Minoru Kanehisa
    posted to domain evolution by cjeans on 2007-11-25 09:42:59 as ** along with 2 people tny dandaman
  • Domain combinations in archaeal, eubacterial and eukaryotic proteomes.
    J Mol Biol, Vol. 310, No. 2. (6 July 2001), pp. 311-325.
    by G Apic, J Gough, SA Teichmann
    posted to domain evolution by cjeans on 2007-11-25 03:27:29 as ** along with 3 people Schmidtc eweaver tny
  • Divergence of interdomain geometry in two-domain proteins.
    Structure, Vol. 14, No. 5. (May 2006), pp. 935-945.
    by JH Han, N Kerrison, C Chothia, SA Teichmann
    posted to domain by cjeans on 2007-11-24 00:39:45 as ** along with 2 people higueruelo choonpeng
  • The importance of sequence diversity in the aggregation and evolution of proteins
    Nature, Vol. 438, No. 7069., pp. 878-881.
    by Caroline F Wright, Sarah A Teichmann, Jane Clarke, Christopher M Dobson
    posted to domain evolution by cjeans on 2007-11-24 00:36:08 as ** along with 3 people dayjm tny jennifermbui
  • Protein Family Expansions and Biological Complexity
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e48.
    by Christine Vogel, Cyrus Chothia
    posted to domain by cjeans on 2007-11-24 00:34:08 as ** along with 4 people and 2 groups cmzmasek ccots Einat caporaso structural_bioinformatics biomedical-nlp
  • Domain Tree Based Analysis of Protein Architecture Evolution
    Mol Biol Evol (19 November 2007), msm254.
    by Kristoffer Forslund, Anna Henricson, Volker Hollich, Erik L Sonnhammer
    posted to domain evolution phylogenetic by cjeans on 2007-11-21 06:16:36 as ** along with 1 person vinithepooh
  • Assessing the impact of alternative splicing on domain interactions in the human proteome.
    J Proteome Res, Vol. 3, No. 1. (b 2004), pp. 76-83.
    by A Resch, Y Xing, B Modrek, M Gorlick, R Riley, C Lee
    posted to domain by cjeans on 2007-11-13 07:38:59 as **
  • Domain assignment for protein structures using a consensus approach: Characterization and analysis
    Protein Sci, Vol. 7, No. 2. (1 February 1998), pp. 233-242.
    by S Jones, M Stewart, A Michie, MB Swindells, C Orengo, JM Thornton
    posted to domain sequence structure by cjeans on 2007-11-13 07:37:56 as **
  • A comparison of SCOP and CATH with respect to domain-domain interactions.
    Proteins (16 July 2007)
    by Emily R R Jefferson, Thomas P P Walsh, Geoffrey J J Barton
    posted to database ddi domain by cjeans on 2007-11-12 08:32:47 as **
  • Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins.
    Protein Sci, Vol. 7, No. 2. (February 1998), pp. 445-456.
    by M Gerstein, M Levitt
    posted to domain sequence structure by cjeans on 2007-11-12 08:32:17 as **
  • Predicting gene ontology functions from ProDom and CDD protein domains.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 648-655.
    by J Schug, S Diskin, J Mazzarelli, BP Brunk, CJ Stoeckert
    posted to domain integrative by cjeans on 2007-11-12 07:29:39 as **
  • Evolution of protein fold in the presence of functional constraints
    Current Opinion in Structural Biology, Vol. 16, No. 3. (June 2006), pp. 399-408.
    by Antonina Andreeva, Alexey G Murzin
    posted to domain structure by cjeans on 2007-11-12 07:29:06 as ** along with 4 people and 2 groups ana barry Einat tny structural_bioinformatics Bioinformatics
  • ProDom: automated clustering of homologous domains.
    Brief Bioinform, Vol. 3, No. 3. (September 2002), pp. 246-251.
    by F Servant, C Bru, S Carrère, E Courcelle, J Gouzy, D Peyruc, D Kahn
    posted to database domain by cjeans on 2007-11-12 01:10:10 as ** along with 1 person Cortel
  • Recent improvements of the ProDom database of protein domain families.
    Nucleic Acids Res, Vol. 27, No. 1. (1 January 1999), pp. 263-267.
    by F Corpet, J Gouzy, D Kahn
    posted to database domain by cjeans on 2007-11-12 01:08:32 as **
  • The ProDom database of protein domain families.
    Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 323-326.
    by F Corpet, J Gouzy, D Kahn
    posted to database domain by cjeans on 2007-11-12 01:06:48 as **
  • The ProDom database of protein domain families: more emphasis on 3D.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C Bru, E Courcelle, S Carrère, Y Beausse, S Dalmar, D Kahn
    posted to database domain by cjeans on 2007-11-12 01:05:28 as ** along with 1 person siebertm
  • ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 267-269.
    by F Corpet, F Servant, J Gouzy, D Kahn
    posted to database domain sequence by cjeans on 2007-11-12 01:02:50 as **
  • Modular arrangement of proteins as inferred from analysis of homology.
    Protein Sci, Vol. 3, No. 3. (March 1994), pp. 482-492.
    by EL Sonnhammer, D Kahn
    posted to domain sequence by cjeans on 2007-11-11 11:25:03 as **
  • The SUPERFAMILY database in 2004: additions and improvements.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Madera, C Vogel, SK Kummerfeld, C Chothia, J Gough
    posted to database domain hmm structure by cjeans on 2007-11-11 11:19:15 as ** along with 1 person Cortel
  • SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 268-272.
    by J Gough, C Chothia
    posted to database domain hmm structure by cjeans on 2007-11-11 11:18:56 as **
  • The SUPERFAMILY database in structural genomics.
    Acta Crystallogr D Biol Crystallogr, Vol. 58, No. Pt 11. (November 2002), pp. 1897-1900.
    by J Gough
    posted to database domain hmm structure by cjeans on 2007-11-11 11:15:44 as **
  • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
    J Mol Biol, Vol. 313, No. 4. (2 November 2001), pp. 903-919.
    by J Gough, K Karplus, R Hughey, C Chothia
    posted to database domain hmm by cjeans on 2007-11-11 11:14:50 as **
  • SCOP database in 2002: refinements accommodate structural genomics.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 264-267.
    by L Lo Conte, SE Brenner, TJ Hubbard, C Chothia, AG Murzin
    posted to database domain structure by cjeans on 2007-11-08 11:56:30 as ** along with 2 people tjimenez dimka
  • SCOP: a structural classification of proteins database.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 257-259.
    by L Lo Conte, B Ailey, TJ Hubbard, SE Brenner, AG Murzin, C Chothia
    posted to database domain structure by cjeans on 2007-11-08 11:55:59 as ** along with 2 people tjimenez dimka
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