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clearbluespring library [113 articles]

Статьи, недавно добавленные в библиотеку clearbluespring .
  • Comparative analysis of sequence characteristics of imprinted genes in human, mouse, and cattle
    Mammalian Genome, Vol. 18, No. 6-7. (July 2007), pp. 538-547.
    by Khatib, Hasan, Zaitoun, Ismail, Kim, Eui-Soo
    posted to sequence imprinting features evolution by clearbluespring on 2008-07-23 20:56:52 as ** along with 1 person rschulz
  • The Evolution of the DLK1-DIO3 Imprinted Domain in Mammals
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e135.
    by Carol A Edwards, Andrew J Mungall, Lucy Matthews, Edward Ryder, Dionne J Gray, Andrew J Pask, Geoffrey Shaw, Jennifer A Graves, Jane Rogers, Ian Dunham, Marilyn B Renfree, Anne C Ferguson-Smith
    posted to monotremes imprinting evolution by clearbluespring on 2008-07-22 21:02:03 as ** along with 3 people and 1 group icq242500260 stajich djkt Berkeley Mycology
  • Statistical methods for detecting molecular adaptation.
    TRENDS IN ECOLOGY AND EVOLUTION, Vol. 15, No. 12. (1 December 2000), pp. 496-503.
    by Z Yang, JP Bielawski
    posted to statistics kaks by clearbluespring on 2008-07-21 15:49:30 as ** along with 2 people and 3 groups stevanspringer hdopazo Bioinformatics FAB-lab BioinfoCIPF
  • Identification of a cluster of X-linked imprinted genes in mice
    Nature Genetics, Vol. 37, No. 6. (22 May 2005), pp. 620-624.
    by Adam S Raefski, Michael J O'Neill
    posted to xci turnermice by clearbluespring on 2008-07-21 15:06:05 as **
  • When gene marriages don't work out: divorce by subfunctionalization.
    Trends in genetics : TIG, Vol. 23, No. 6. (June 2007), pp. 270-272.
    by BP Cusack, KH Wolfe
    posted to subfunctionalisation duplication by clearbluespring on 2008-07-11 14:35:19 as **
  • Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates.
    Molecular biology and evolution, Vol. 24, No. 3. (March 2007), pp. 679-686.
    by BP Cusack, KH Wolfe
    posted to retrogenes evolution by clearbluespring on 2008-07-11 14:33:48 as **
  • Expression patterns of the novel imprinted genes Nap1l5 and Peg13 and their non-imprinted host genes in the adult mouse brain
    Gene Expression Patterns, Vol. 4, No. 6. (October 2004), pp. 741-747.
    by William Davies, Rachel J Smith, Gavin Kelsey, Lawrence S Wilkinson
    posted to nap expressionpattern by clearbluespring on 2008-07-11 14:31:34 as **
  • Retroposed new genes out of the X in Drosophila.
    Genome Res, Vol. 12, No. 12. (December 2002), pp. 1854-1859.
    by E Betrán, K Thornton, M Long
    posted to xchromosome retrogenes drosophila by clearbluespring on 2008-07-11 14:29:00 as ** along with 2 people and 1 group ushishir penka Nie
  • Retrotransposition as a Source of New Promoters.
    Mol Biol Evol (25 March 2008)
    by Kohji Okamura, Kenta Nakai
    posted to retrogenes promotors by clearbluespring on 2008-07-11 14:26:18 as ** along with 2 people and 1 group cisevol rschulz cis-regulatory-evolution
  • CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure.
    PLoS Genet, Vol. 2, No. 3. (March 2006)
    by C Bock, M Paulsen, S Tierling, T Mikeska, T Lengauer, J Walter
    posted to sequence imprinting human features by clearbluespring on 2008-07-11 14:15:36 as ** along with 5 people oelemento kaarsinogen eckart_bindewald olympos epigenetics
  • Comparative genome analysis of the mouse imprinted gene impact and its nonimprinted human homolog IMPACT: toward the structural basis for species-specific imprinting.
    Genome research, Vol. 10, No. 12. (December 2000), pp. 1878-1889.
    by K Okamura, Y Hagiwara-Takeuchi, T Li, TH Vu, M Hirai, M Hattori, Y Sakaki, AR Hoffman, T Ito
    posted to sequence imprinting features by clearbluespring on 2008-07-11 13:56:10 as **
  • Lessons from comparative analysis of species-specific imprinted genes.
    Cytogenetic and genome research, Vol. 113, No. 1-4. (2006), pp. 159-164.
    by K Okamura, T Ito
    posted to sequence imprinting features by clearbluespring on 2008-07-11 13:49:29 as **
  • Repetitive elements in imprinted genes.
    Cytogenet Genome Res, Vol. 113, No. 1-4. (2006), pp. 109-115.
    by J Walter, B Hutter, T Khare, M Paulsen
    posted to sequence imprinting features by clearbluespring on 2008-07-11 13:38:11 as ** along with 2 people and 2 groups dchughes N0131826 G4ID Genetics-of-Gambling
  • Genomic imprinting and kinship: how good is the evidence?
    Annual review of genetics, Vol. 38 (2004), pp. 553-585.
    by D Haig
    posted to imprinting evolution by clearbluespring on 2008-07-09 15:10:05 as **
  • Kinship asymmetries and the divided self.
    The Behavioral and brain sciences, Vol. 31, No. 3. (June 2008), pp. 271-272.
    by David Haig
    posted to imprinting evolution by clearbluespring on 2008-07-08 16:30:10 as **
  • Imprinted Nesp55 influences behavioral reactivity to novel environments.
    Molecular and cellular biology, Vol. 25, No. 8. (April 2005), pp. 3019-3026.
    by A Plagge, AR Isles, E Gordon, T Humby, W Dean, S Gritsch, R Fischer-Colbrie, LS Wilkinson, G Kelsey
    posted to escells by clearbluespring on 2008-07-04 16:17:19 as **
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to evolution duplication by clearbluespring on 2008-07-04 12:18:48 as ** along with 8 people and 2 groups skumagai mcphee dpollard dchughes djkt biomcgary blobbybirdman kjlipin EisenLab cis-regulatory-evolution
  • The Evolutionary Fate and Consequences of Duplicate Genes
    Science, Vol. 290, No. 5494. (10 November 2000), pp. 1151-1155.
    by Michael Lynch, John S Conery
    posted to evolution duplication by clearbluespring on 2008-07-04 12:01:46 as ** along with 7 people BioNica knaseanka arve nirfriedman echinotrix treangen timflutre
  • DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.
    Bioinformatics (Oxford, England), Vol. 18, No. 3. (March 2002), pp. 500-501.
    by X Gu, K Vander Velden
    posted to tools statistics duplication by clearbluespring on 2008-07-03 17:45:27 as **
  • Statistical methods for testing functional divergence after gene duplication
    Mol Biol Evol, Vol. 16, No. 12. (1 December 1999), pp. 1664-1674.
    by X Gu
    posted to tools statistics duplication by clearbluespring on 2008-07-03 17:42:37 as **
  • Rapid evolution through gene duplication and subfunctionalization of the testes-specific alpha4 proteasome subunits in Drosophila.
    Genetics, Vol. 168, No. 3. (November 2004), pp. 1421-1432.
    by DG Torgerson, RS Singh
    posted to retrogenes evolution duplication by clearbluespring on 2008-07-03 17:35:41 as ** along with 2 people BioNica zhlei
  • Reciprocally imprinted genes and the response to selection on one sex.
    Genetics (18 June 2008)
    by Manus Patten, David Haig
    posted to sexspecific imprinting by clearbluespring on 2008-06-23 11:55:46 as **
  • Allele-specific demethylation at an imprinted mammalian promoter
    Nucl. Acids Res., Vol. 35, No. 20. (29 November 2007), pp. 7031-7039.
    by Andrew J Wood, Deborah Bourc'his, Timothy H Bestor, Rebecca J Oakey
    posted to retrogenes inpp5f_v3 by clearbluespring on 2008-06-10 18:23:51 as ** along with 2 people epigenetics rschulz
  • Genome-Wide Analysis Reveals a Complex Pattern of Genomic Imprinting in Mice
    PLoS Genet, Vol. 4, No. 6. (6 June 2008), e1000091.
    by Jason B Wolf, James M Cheverud, Charles Roseman, Reinmar Hager
    posted to qtl imprinting by clearbluespring on 2008-06-10 11:00:15 as ** along with 1 person djkt
  • Keeping sister chromatids together: cohesins in meiosis.
    Reproduction, Vol. 130, No. 6. (December 2005), pp. 783-790.
    by E Revenkova, R Jessberger
    posted to review cohesin by clearbluespring on 2008-06-04 12:21:36 as ** along with 1 person sebastien_vigneau
  • Evolution of the CDKN1C-KCNQ1 imprinted domain
    BMC Evolutionary Biology, Vol. 8 (29 May 2008), 163.
    by Eleanor I Ager, Andrew J Pask, Helen M Gehring, Geoff Shaw, Marilyn B Renfree
    posted to igf2 evolution by clearbluespring on 2008-06-01 11:59:22 as **
  • The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression.
    Nature genetics (4 May 2008)
    by Jacob L L Mueller, Shantha K K Mahadevaiah, Peter J J Park, Peter E E Warburton, David C C Page, James M A M Turner
    posted to xci xchromosome tandemarrays by clearbluespring on 2008-05-29 12:21:14 as ** along with 1 person sebastien_vigneau
  • The not-so-silent X
    Nat Genet, Vol. 40, No. 6. (June 2008), pp. 689-690.
    by Christine M Disteche
    posted to xci xchromosome msci by clearbluespring on 2008-05-29 12:11:16 as **
  • Alternative splicing: A missing piece in the puzzle of intron gain.
    Proceedings of the National Academy of Sciences of the United States of America (7 May 2008)
    by Rosa Tarrío, Francisco J J Ayala, Francisco Rodríguez-Trelles
    posted to intron aqisition by clearbluespring on 2008-05-21 12:11:51 as ** along with 3 people and 1 group stajich bootsy imtechnology Berkeley Mycology
  • Genomic imprinting at the mammalian Dlk1-Dio3 domain.
    Trends in genetics : TIG (7 May 2008)
    by Simao Teixeira da T Rocha, Carol A A Edwards, Mitsuteru Ito, Tsutomu Ogata, Anne C C Ferguson-Smith
    posted to review dlk-dio3 by clearbluespring on 2008-05-19 10:41:32 as **
  • DNA methylation profiling of pseudogene-parental gene pairs and two gene families.
    Genomics (29 April 2008)
    by Rene Cortese, Manuel Krispin, Gunter Weiss, Kurt Berlin, Florian Eckhardt
    posted to methylation evolution by clearbluespring on 2008-05-06 09:18:50 as **
  • DNA Damage, Homology-Directed Repair, and DNA Methylation.
    PLoS Genet, Vol. 3, No. 7. (6 July 2007)
    by Concetta Cuozzo, Antonio Porcellini, Tiziana Angrisano, Annalisa Morano, Bongyong Lee, Alba Di D Pardo, Samantha Messina, Rodolfo Iuliano, Alfredo Fusco, Maria R R Santillo, Mark T T Muller, Lorenzo Chiariotti, Max E E Gottesman, Enrico V V Avvedimento
    posted to methylation by clearbluespring on 2008-05-01 16:47:28 as **
  • Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch.
    Molecular cell, Vol. 25, No. 1. (12 January 2007), pp. 43-56.
    by ME Donohoe, LF Zhang, N Xu, Y Shi, JT Lee
    posted to yy1 by clearbluespring on 2008-04-30 15:44:01 as **
  • Control of neurulation by the nucleosome assembly protein-1-like 2.
    Nat Genet, Vol. 25, No. 4. (August 2000), pp. 431-435.
    by UC Rogner, DD Spyropoulos, N Le Novère, JP Changeux, P Avner
    posted to nap by clearbluespring on 2008-04-29 17:34:24 as ** along with 1 person lenov
  • RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by JF Lucier, J Perreault, JF Noël, G Boire, JP Perreault
    posted to targetsiteduplication by clearbluespring on 2008-04-11 16:27:57 as ** along with 1 person rschulz
  • A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.
    Hum Genet, Vol. 117, No. 5. (September 2005), pp. 411-427.
    by JM Chen, PD Stenson, DN Cooper, C Férec
    posted to human retrogenes targetsiteduplication by clearbluespring on 2008-04-11 16:25:52 as ** along with 2 people aprasad rschulz
  • Chromosomal Gene Movements Reflect the Recent Origin and Biology of Therian Sex Chromosomes
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e80.
    by Lukasz Potrzebowski, Nicolas Vinckenbosch, Ana C Marques, Frédéric Chalmel, Bernard Jégou, Henrik Kaessmann
    posted to dating msci xchromosome by clearbluespring on 2008-04-02 11:27:51 as ** along with 1 person rschulz
  • DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
    Genes Dev., Vol. 22, No. 7. (1 April 2008), pp. 908-917.
    by Satomi Kuramochi-Miyagawa, Toshiaki Watanabe, Kengo Gotoh, Yasushi Totoki, Atsushi Toyoda, Masahito Ikawa, Noriko Asada, Kanako Kojima, Yuka Yamaguchi, Takashi W Ijiri, Kenichiro Hata, En Li, Yoichi Matsuda, Tohru Kimura, Masaru Okabe, Yoshiyuki Sakaki, Hiroyuki Sasaki, Toru Nakano
    posted to methylation spermatogenesis transposableelements by clearbluespring on 2008-04-02 11:13:23 as **
  • Transient cyclical methylation of promoter DNA
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 112-115.
    by Sara Kangaspeska, Brenda Stride, Raphael Metivier, Maria Polycarpou-Schwarz, David Ibberson, Richard P Carmouche, Vladimir Benes, Frank Gannon, George Reid
    posted to cyclical maintenance by clearbluespring on 2008-03-18 10:23:24 as ** along with 4 people vega djkt maximilianh dunnp
  • Cyclical DNA methylation of a transcriptionally active promoter
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 45-50.
    by Raphael Metivier, Rozenn Gallais, Christophe Tiffoche, Christine Le Peron, Renata Z Jurkowska, Richard P Carmouche, David Ibberson, Peter Barath, Florence Demay, George Reid, Vladimir Benes, Albert Jeltsch, Frank Gannon, Gilles Salbert
    posted to cyclical methylation by clearbluespring on 2008-03-18 10:20:55 as ** along with 3 people vega djkt epigenetics
  • Neuron-specific relaxation of Igf2r imprinting is associated with neuron-specific histone modifications and lack of its antisense transcript Air
    Hum. Mol. Genet., Vol. 14, No. 17. (1 September 2005), pp. 2511-2520.
    by Yoko Yamasaki, Tomohiko Kayashima, Hidenobu Soejima, Akira Kinoshita, Ko-Ichiro Yoshiura, Naomichi Matsumoto, Tohru Ohta, Takeshi Urano, Hideaki Masuzaki, Tadayuki Ishimaru, Tsunehiro Mukai, Norio Niikawa, Tatsuya Kishino
    posted to brainregions cellculture by clearbluespring on 2008-03-07 16:22:12 as **
  • Imprinting in neurons.
    Cytogenet Genome Res, Vol. 113, No. 1-4. (2006), pp. 209-214.
    by T Kishino
    posted to brainregions cellculture igf2r by clearbluespring on 2008-03-07 12:30:34 as **
  • STAT3 is a potential modulator of HIF-1-mediated VEGF expression in human renal carcinoma cells
    FASEB J. (26 May 2005), 04-3099fje.
    by Joo E Jung, Hyun-Gyu Lee, Ik-Hyun Cho, Doo H Chung, Sun-Hee Yoon, Young M Yang, Jung W Lee, Seongwon Choi, Jong-Wan Park, Sang-Kyu Ye, Myung-Hee Chung
    posted to chip wholetissue by clearbluespring on 2008-03-07 12:24:52 as **
  • Contribution of HIF-1α or HIF-2α to erythropoietin expression: in vivo evidence based on chromatin immunoprecipitation
    Annals of Hematology, Vol. 87, No. 1. (21 January 2008), pp. 11-17.
    by Eun-Jin Yeo, Young-Suk Cho, Myung-Suk Kim, Jong-Wan Park
    posted to chip wholetissue by clearbluespring on 2008-03-07 12:22:52 as **
  • Meiotic failure in male mice lacking an X-linked factor
    Genes Dev., Vol. 22, No. 5. (1 March 2008), pp. 682-691.
    by Fang Yang, Katarina Gell, Godfried W van der Heijden, Sigrid Eckardt, Adrian N Leu, David C Page, Ricardo Benavente, Chengtao Her, Christer Hoog, John K Mclaughlin, Peijing J Wang
    posted to msci spermatogenesis by clearbluespring on 2008-03-04 10:28:11 as **
  • Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits
    Genome Res., Vol. 18, No. 3. (1 March 2008), pp. 500-508.
    by Toyoyuki Takada, Akihiko Mita, Akiteru Maeno, Takahiro Sakai, Hiroshi Shitara, Yoshiaki Kikkawa, Kazuo Moriwaki, Hiromichi Yonekawa, Toshihiko Shiroishi
    posted to consomic msm strains by clearbluespring on 2008-03-03 10:16:55 as **
  • Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta
    Nature Genetics, Vol. 40, No. 2. (06 January 2008), pp. 243-248.
    by Yoichi Sekita, Hirotaka Wagatsuma, Kenji Nakamura, Ryuichi Ono, Masayo Kagami, Noriko Wakisaka, Toshiaki Hino, Rika Suzuki-Migishima, Takashi Kohda, Atsuo Ogura, Tsutomu Ogata, Minesuke Yokoyama, Tomoko Kaneko-Ishino, Fumitoshi Ishino
    posted to retrogenes rtl1 by clearbluespring on 2008-03-03 10:12:37 as ** along with 2 people rschulz meiklej
  • CTCF binding sites promote transcription initiation and prevent DNA methylation on the maternal allele at the imprinted H19/Igf2 locus.
    Hum Mol Genet, Vol. 15, No. 19. (1 October 2006), pp. 2945-2954.
    by N Engel, JL Thorvaldsen, MS Bartolomei
    posted to chip ctcf h19 by clearbluespring on 2008-02-29 14:41:16 as **
  • Allele-specific methylation of a functional CTCF binding site upstream of MEG3 in the human imprinted domain of 14q32
    Chromosome Research, Vol. 13, No. 8. (December 2005), pp. 809-818.
    by Alberto Rosa, Yuan-Qing Wu, Bernard Kwabi-Addo, Karen Coveler, Reid, Lisa Shaffer
    posted to ctcf human meg3 by clearbluespring on 2008-02-29 14:01:37 as **
  • Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci.
    J Biol Chem, Vol. 282, No. 46. (16 November 2007), pp. 33336-33345.
    by M Renda, I Baglivo, B Burgess-Beusse, S Esposito, R Fattorusso, G Felsenfeld, PV Pedone
    posted to ctcf by clearbluespring on 2008-02-29 13:53:04 as **
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