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cmzmasek library [127 articles]

Статьи, недавно добавленные в библиотеку cmzmasek library ordered by importance.
  • Eukaryotic evolution, changes and challenges
    Nature, Vol. 440, No. 7084., pp. 623-630.
    by Martin T Embley, William Martin
    posted to eukaryote-evolution by cmzmasek on 2008-08-12 19:10:47 as ** along with 4 people and 4 groups dchughes emilyhare cmm dandaman EisenLab FAB-lab G4ID Genetics-of-Gambling
  • Molecular evolution of the ependymin protein family: a necessary update
    BMC Evolutionary Biology, Vol. 7 (15 February 2007), 23.
    by Edna C Suarez-Castillo, Jose E Garcia-Arraras
    posted to evolution ependymin by cmzmasek on 2008-08-09 00:21:03 as **
  • FGF signalling controls formation of the apical sensory organ in the cnidarian Nematostella vectensis
    Development, Vol. 135, No. 10. (15 May 2008), pp. 1761-1769.
    by Fabian Rentzsch, Jens H Fritzenwanker, Corinna B Scholz, Ulrich Technau
    posted to nematostella fgf development by cmzmasek on 2008-08-08 19:43:46 as **
  • Fibroblast growth factors.
    Genome Biol, Vol. 2, No. 3. (2001)
    by DM Ornitz, N Itoh
    posted to review fgf development by cmzmasek on 2008-08-08 19:34:16 as ** along with 2 people Alan lisa1
  • Signal-induced repression: the exception or the rule in developmental signaling?
    Developmental cell, Vol. 15, No. 1. (July 2008), pp. 11-22.
    by M Affolter, G Pyrowolakis, A Weiss, K Basler
    posted to review developmental-pathways development by cmzmasek on 2008-08-06 22:18:41 as **
  • Novel genes dramatically alter regulatory network topology in amphioxus
    Genome Biology, Vol. 9, No. 8. (2008)
    by Qing Zhang, Christian Zmasek, Larry Dishaw, Gail M Mueller, Yuzhen Ye, Gary Litman, Adam Godzik
    posted to networks network-evolution domain-shuffling domain-evolution domain-combinations amphioxus by cmzmasek on 2008-08-05 05:27:45 as **
  • Phylogenetic relationships among algae based on complete large-subunit rRNA sequences.
    International journal of systematic and evolutionary microbiology, Vol. 51, No. Pt 3. (May 2001), pp. 737-749.
    by A Ben Ali, R De Baere, G Van der Auwera, R De Wachter, Y Van de Peer
    posted to tree-of-life eukaryote-evolution by cmzmasek on 2008-07-03 22:18:42 as **
  • Phylogenomics reshuffles the eukaryotic supergroups.
    PLoS ONE, Vol. 2, No. 8. (2007)
    by F Burki, K Shalchian-Tabrizi, M Minge, A Skjaeveland, SI Nikolaev, KS Jakobsen, J Pawlowski
    posted to tree-of-life supergroups eukaryote-evolution 6-supergroups 4-supergroups by cmzmasek on 2008-07-03 21:57:53 as ** along with 2 people and 1 group operon jdelcampo Microbial-Ecology
  • Living with death: the evolution of the mitochondrial pathway of apoptosis in animals
    Cell Death and Differentiation, Vol. aop, No. current.
    by A Oberst, C Bender, DR Green
    posted to review mitochondrial_pathway apoptosis-evolution apoptosis by cmzmasek on 2008-07-02 21:42:59 as ** along with 2 people balicea paulschlesinger
  • The origins of multicellularity: a multi-taxon genome initiative
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Inaki Ruiz-Trillo, Gertraud Burger, Peter W Holland, Nicole King, Franz B Lang, Andrew J Roger, Michael W Gray
    posted to protist-evolution multicellularity eukaryote-evolution by cmzmasek on 2008-07-02 01:21:00 as ** along with 3 people stajich srfairclough dandaman
  • An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences
    BMC Evolutionary Biology, Vol. 5, No. 1. (2005)
    by Celine Brochier, Patrick Forterre, Simonetta Gribaldo
    posted to archaeal-evolution by cmzmasek on 2008-07-01 04:48:09 as **
  • A korarchaeal genome reveals insights into the evolution of the Archaea.
    Proceedings of the National Academy of Sciences of the United States of America (5 June 2008)
    by James G G Elkins, Mircea Podar, David E E Graham, Kira S S Makarova, Yuri Wolf, Lennart Randau, Brian P P Hedlund, Céline Brochier-Armanet, Victor Kunin, Iain Anderson, Alla Lapidus, Eugene Goltsman, Kerrie Barry, Eugene V V Koonin, Phil Hugenholtz, Nikos Kyrpides, Gerhard Wanner, Paul Richardson, Martin Keller, Karl O O Stetter
    posted to korarchaea genome-sequence archaeal-evolution by cmzmasek on 2008-07-01 04:43:11 as ** along with 2 people skato_toyaku neils
  • Archaebacteria (Archaea) and the origin of the eukaryotic nucleus
    Current Opinion in Microbiology, Vol. 8, No. 6. (December 2005), pp. 630-637.
    by William Martin
    posted to nucleus eukaryote_origins eukaryote-evolution archaea by cmzmasek on 2008-06-30 20:02:05 as **
  • Comparative genomics of protists: new insights into the evolution of eukaryotic signal transduction and gene regulation.
    Annual review of microbiology, Vol. 61 (2007), pp. 453-475.
    by V Anantharaman, LM Iyer, L Aravind
    posted to signal-transduction signalling-evolution review protists evolution by cmzmasek on 2008-06-21 02:32:41 as **
  • Proposing a solution to the Articulata-Ecdysozoa controversy
    Zoologica Scripta, Vol. 32, No. 5. (2003), pp. 475-482.
    by Claus Nielsen
    posted to ecdysozoans animal-evolution by cmzmasek on 2008-06-21 02:22:48 as **
  • Retinoic acid in development: towards an integrated view
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 541-553.
    by Karen Niederreither, Pascal Dolle
    posted to review retinoic_acid development by cmzmasek on 2008-06-18 23:45:26 as ** along with 3 people ajaymalik fpattyn dchughes
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to review methods go-term-enrichment go-categorization go-analysis computational-biology by cmzmasek on 2008-06-18 23:09:19 as ** along with 20 people and 2 groups rvosa bpcusack marck capitall realzhang gjuggler A_Olympia fpattyn djkt renatomilani giovenko tmmurali cabbagesofdoom ptrobajo RamuAnandakrishnan roys carlk mariakmejia aheilbut jyuh FAB-lab logics of knowledge
  • Development: Homeobox kick-off for Arabidopsis body plan
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 498-499.
    by Louisa Flintoft
    posted to wox homeobox development arabidopsis by cmzmasek on 2008-06-18 22:45:28 as **
  • Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo.
    Developmental cell, Vol. 14, No. 6. (June 2008), pp. 867-876.
    by H Breuninger, E Rikirsch, M Hermann, M Ueda, T Laux
    posted to wox homeobox development arabidopsis by cmzmasek on 2008-06-18 22:44:44 as ** along with 1 person imtechnology
  • The gene ontology categorizer.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by CA Joslyn, SM Mniszewski, A Fulmer, G Heaton
    posted to methods go-categorization go-analysis gene-ontology computational-biology by cmzmasek on 2008-06-13 00:25:43 as ** along with 1 person ziquje
  • BayGO: Bayesian analysis of ontology term enrichment in microarray data.
    BMC Bioinformatics, Vol. 7 (2006)
    by RZ Vêncio, T Koide, SL Gomes, CA Pereira
    posted to methods go-term-enrichment go-analysis gene-ontology computational-biology bayesian-methods by cmzmasek on 2008-06-12 23:52:50 as ** along with 1 person jfr
  • Notch signalling: a simple pathway becomes complex
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 9., pp. 678-689.
    by Sarah J Bray
    posted to review notch-signalling notch developmental-pathways development by cmzmasek on 2008-06-12 02:39:09 as **
  • A higher-level phylogenetic classification of the Fungi
    Mycological Research, Vol. 111, No. 5. (May 2007), pp. 509-547.
    by David S Hibbett, Manfred Binder, Joseph F Bischoff, Meredith Blackwell, Paul F Cannon, Ove E Eriksson, Sabine Huhndorf, Timothy James, Paul M Kirk, Robert Lücking, Thorsten, François Lutzoni, Brandon P Matheny, David J Mclaughlin, Martha J Powell, Scott Redhead, Conrad L Schoch, Joseph W Spatafora, Joost A Stalpers, Rytas Vilgalys, Catherine M Aime, André Aptroot, Robert Bauer, Dominik Begerow, Gerald L Benny, Lisa A Castlebury, Pedro W Crous, Yu-Cheng Dai, Walter Gams, David M Geiser, Gareth W Griffith, Cécile Gueidan, David L Hawksworth, Geir Hestmark, Kentaro Hosaka, Richard A Humber, Kevin D Hyde, Joseph E Ironside, Urmas Kõljalg, Cletus P Kurtzman, Karl-Henrik Larsson, Robert Lichtwardt, Joyce Longcore, Jolanta Miadlikowska, Andrew Miller, Jean-Marc Moncalvo, Sharon Mozley-Standridge, Franz Oberwinkler, Erast Parmasto, Valérie Reeb, Jack D Rogers, Claude Roux, Leif Ryvarden, José P Sampaio, Arthur Schüßler, Junta Sugiyama, Greg R Thorn, Leif Tibell, Wendy A Untereiner, Christopher Walker, Zheng Wang, Alex Weir, Michael Weiss, Merlin M White, Katarina Winka, Yi-Jian Yao, Ning Zhang
    posted to fungal-evolution by cmzmasek on 2008-06-11 23:07:50 as **
  • The hidden universal distribution of amino acids biosynthetic networks: a genomic perspective on its origins and evolution
    Genome Biology, Vol. 9 (09 June 2008), R95.
    by Georgina Hernandez-Montes, Javier J Diaz-Mejia, Ernesto Perez-Rueda, Lorenzo Segovia
    posted to network-evolution metabolism amino-acids-biosynthesis by cmzmasek on 2008-06-11 03:08:40 as ** along with 1 person reyez
  • Missing link in the evolution of Hox clusters
    Gene, Vol. 387, No. 1-2. (31 January 2007), pp. 21-30.
    by Soichi Ogishima, Hiroshi Tanaka
    posted to hox-cluster hox evolution evo-devo by cmzmasek on 2008-06-11 02:26:32 as **
  • Bacterial regulatory networks are extremely flexible in evolution.
    Nucleic Acids Res, Vol. 34, No. 12. (2006), pp. 3434-3445.
    by I Lozada-Chávez, SC Janga, J Collado-Vides
    posted to transcriptional-regulatory-network network-evolution evolution-of-transcriptional-regulation bacterial by cmzmasek on 2008-06-05 01:03:33 as ** along with 3 people operon timflutre dylan77
  • Microbial evolution: the genome, the regulome and beyond
    Environmental Microbiology, Vol. 10, No. 7. (2008), pp. 1663-1667.
    by Miguel Vicente, Jesus Mingorance
    posted to transcriptional-regulatory-network review regulome evolution-of-transcriptional-regulation by cmzmasek on 2008-06-05 01:02:14 as **
  • Genome Analysis of the Unicellular Green Alga Chlamydomonas reinhardtii Indicates an Ancient Evolutionary Origin for Key Pattern Recognition and Cell-Signaling Protein Families
    Genetics, Vol. 179, No. 1. (1 May 2008), pp. 193-197.
    by Glen L Wheeler, Diego Miranda-Saavedra, Geoffrey J Barton
    posted to signalling-evolution signaling pattern-recognition by cmzmasek on 2008-06-03 05:04:03 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • A twelve-step program for evolving multicellularity and a division of labor.
    Bioessays, Vol. 27, No. 3. (March 2005), pp. 299-310.
    by DL Kirk
    posted to multicellularity evolution-of-multicellularity evolution-of-complexity by cmzmasek on 2008-06-03 04:53:42 as ** along with 4 people and 1 group stevanspringer matzke stajich srfairclough FAB-lab
  • The origins of genome complexity.
    Science, Vol. 302, No. 5649. (21 November 2003), pp. 1401-1404.
    by M Lynch, JS Conery
    posted to evolution-of-complexity evolution complexity by cmzmasek on 2008-06-02 23:29:11 as ** along with 6 people and 1 group HugoMarcelo operon madhadron bluto timflutre jwestbrook King_Lab
  • Apoptosis in Unicellular Organisms: Mechanisms and Evolution
    Biochemistry (Moscow), Vol. 69, No. 10., 1055.
    by AV Gordeeva, YA Labas, RA Zvyagilskaya
    posted to unicellular-organisms review evolution apoptosis by cmzmasek on 2008-05-24 00:47:19 as **
  • Rare Genomic Characters Do Not Support Coelomata: RGC_CAMs.
    J Mol Evol (5 March 2008)
    by Scott W Roy, Manuel Irimia
    posted to no-coelomata ecdysozoans coelomata animal-evolution by cmzmasek on 2008-05-09 18:02:27 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Six major steps in animal evolution: are we derived sponge larvae?
    Evolution & Development, Vol. 10, No. 2. (April 2008), pp. 241-257.
    by Nielsen, Claus
    posted to evo-devo complexity animal-evolution by cmzmasek on 2008-05-07 04:53:45 as **
  • Multigene Phylogeny of Choanozoa and the Origin of Animals
    PLoS ONE
    by Kamran Shalchian-Tabrizi1, Marianne A Minge, Mari Espelund, Russell Orr, Torgeir Ruden, Kjetill S Jakobsen, Thomas Cavalier-Smith
    posted to eukaryote-evolution choanozoa animal-evolution by cmzmasek on 2008-05-07 03:33:56 as **
  • Chance and necessity: the evolution of morphological complexity and diversity
    Nature, Vol. 409, No. 6823. (22 February 2001), pp. 1102-1109.
    by Sean B Carroll
    posted to morphological-complexity evolution-of-complexity complexity by cmzmasek on 2008-05-07 00:33:55 as ** along with 1 person jknabe
  • Size and complexity among multicellular organisms
    Biological Journal of the Linnean Society, Vol. 60, No. 3. (1997), pp. 345-363.
    by Graham Bell, Arne O Mooers
    posted to size evolution-of-complexity complexity by cmzmasek on 2008-05-06 22:54:04 as **
  • Protein Family Expansions and Biological Complexity
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e48.
    by Christine Vogel, Cyrus Chothia
    posted to protein-family-expansion expansion evolution-of-complexity complexity by cmzmasek on 2008-05-06 20:40:25 as ** along with 4 people and 2 groups ccots Einat caporaso cjeans structural_bioinformatics biomedical-nlp
  • Transposable elements and the evolution of eukaryotic complexity.
    Current issues in molecular biology, Vol. 4, No. 3. (July 2002), pp. 65-76.
    by NJ Bowen, IK Jordan
    posted to transposable-elements evolution-of-complexity eukaryote-evolution complexity by cmzmasek on 2008-05-06 02:28:24 as **
  • The Evolution of Eukaryotes
    Science, Vol. 316, No. 5824. (27 April 2007), pp. 542c-543.
    by William Martin, Tal Dagan, Eugene V Koonin, Jonathan L Dipippo, Peter J Gogarten, James A Lake;, CG Kurland, Lesley J Collins, David Penny
    posted to eukaryote-evolution by cmzmasek on 2008-05-06 02:16:44 as **
  • notes Genomics and the Irreducible Nature of Eukaryote Cells
    Science, Vol. 312, No. 5776. (19 May 2006), pp. 1011-1014.
    by CG Kurland, LJ Collins, D Penny
    posted to eukaryote-evolution by cmzmasek on 2008-05-06 01:47:48 as ** along with 7 people and 7 groups barry kuhn dayjm dchughes cmm azuma mattjb structural_bioinformatics Bioinformatics FAB-lab G4ID ComplexAdaptiveSystems DSTO-CAS Genetics-of-Gambling
  • On the optimality of the neighbor-joining algorithm
    Algorithms for Molecular Biology, Vol. 3 (30 April 2008), 5.
    by Kord Eickmeyer, Peter Huggins, Lior Pachter, Ruriko Yoshida
    posted to phylogeny-inference phylogenetics neighbor-joining methods computational-biology by cmzmasek on 2008-05-01 18:09:43 as ** along with 3 people Tingting joaocarrico dquest
  • Design of protein function leaps by directed domain interface evolution
    Proceedings of the National Academy of Sciences (29 April 2008), 0801097105.
    by Jin Huang, Akiko Koide, Koki Makabe, Shohei Koide
    posted to proteins protein-function evolution domain-interface-evolution domain-evolution biochemistry by cmzmasek on 2008-04-30 20:42:56 as ** along with 3 people marck zwang choonpeng
  • On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
    Int J Syst Evol Microbiol, Vol. 55, No. 1. (1 January 2005), pp. 487-496.
    by James T Harper, Esme Waanders, Patrick J Keeling
    posted to protist-evolution eukaryote-evolution chromalveolate-evolution chromalveolate by cmzmasek on 2008-04-29 23:30:52 as **
  • Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species.
    Proc Natl Acad Sci U S A (25 February 2008)
    by Cindy Martens, Klaas Vandepoele, Yves Van de Peer
    posted to whole-genome-analysis eukaryote-evolution domain-combinations domain-arrangements dollo chromalveolate-evolution chromalveolate by cmzmasek on 2008-04-29 23:10:29 as ** along with 2 people and 2 groups vaulot aconesa Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
    Mol Biol Evol, Vol. 17, No. 4. (April 2000), pp. 540-552.
    by J Castresana
    posted to tools phylogenetics methods gblocks conservation alignment by cmzmasek on 2008-04-28 01:33:57 as ** along with 4 people and 1 group aprasad treangen stajich ArtemPankin Berkeley Mycology
  • Evolution of the insect Sox genes.
    BMC Evolutionary Biology, Vol. 8 (26 April 2008), 120.
    by Megan J Wilson, Peter K Dearden
    posted to transcriptional-control sox-genes sox insect evolution development by cmzmasek on 2008-04-28 01:19:14 as **
  • Trace fossils and substrates of the terminal Proterozoic-Cambrian transition: Implications for the record of early bilaterians and sediment mixing
    Proceedings of the National Academy of Sciences, Vol. 99, No. 20. (1 October 2002), pp. 12572-12576.
    by Mary L Droser, Soren Jensen, James G Gehling
    posted to proterozoic-cambrian-transition precambrian-cambrian-transition animal-evolution by cmzmasek on 2008-04-26 02:20:04 as **
  • Bilaterians of the Precambrian-Cambrian Transition and the Annelid-Arthropod Relationship
    Proceedings of the National Academy of Sciences, Vol. 86, No. 7. (1 April 1989), pp. 2272-2275.
    by James W Valentine
    posted to precambrian-cambrian-transition bilaterians animal-evolution by cmzmasek on 2008-04-26 01:56:27 as **
  • Transposable elements and the evolution of regulatory networks.
    Nat Rev Genet (27 March 2008)
    by Cédric Feschotte
    posted to transposable-elements regulatory-networks network-evolution by cmzmasek on 2008-04-25 21:45:06 as ** along with 9 people and 1 group timflutre pradiptaray smbe2008 eskay roys jonsta247 djkt bootsy idonaldson BergmanLab
  • Molecular Phylogenetics of Mastodon and Tyrannosaurus rex
    Science, Vol. 320, No. 5875. (25 April 2008), 499.
    by Chris L Organ, Mary H Schweitzer, Wenxia Zheng, Lisa M Freimark, Lewis C Cantley, John M Asara
    posted to tyrannosaurus-rex cool animal-evolution by cmzmasek on 2008-04-25 18:27:08 as ** along with 1 person and 2 groups jlgreen iSEEM Green Lab
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