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dagmar library [238 articles]

Статьи, недавно добавленные в библиотеку dagmar .
  • A synthetic oscillatory network of transcriptional regulators.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338.
    by MB Elowitz, S Leibler
    posted to repressilator by dagmar on 2008-08-16 08:57:14 as read along with 11 people Borelli jjray austin tvdbulck msuarezdiez rklancer dgront sharatjv mhucka margaritis Grobi
  • Handling Changes of Database Schemas and Corresponding Ontologies
    Advances in Conceptual Modeling - Theory and Practice (2006), pp. 227-236.
    by Andreas Kupfer, Silke Eckstein, Karl Neumann, Brigitte Mathiak
    posted to ontology evolution by dagmar on 2008-07-21 13:39:46 as **
  • An Extendable System for Conceptual Modeling and Simulation of Signal Transduction Pathways
    Advances in Conceptual Modeling – Foundations and Applications (2007), pp. 54-63.
    by Silke Eckstein, Claudia Täubner
    posted to modeling mda by dagmar on 2008-07-21 13:28:29 as **
  • Similarity-based ontology alignment in OWL-Lite
    European Conference on Artificial Intelligence ECAI-04 (2004)
    by Jérôme Euzenat, Petko Valtchev
    posted to owl ontology matching by dagmar on 2008-07-18 16:15:16 as ***** along with 1 person and 2 groups miguelfm KnowledgeEngineering Knowledge-Engineering
  • Toward an engineering discipline for grammarware
    ACM Trans. Softw. Eng. Methodol., Vol. 14, No. 3. (July 2005), pp. 331-380.
    by Paul Klint, Ralf Lämmel, Chris Verhoef
    posted to language grammar by dagmar on 2008-07-15 08:27:59 as *****
  • OWL Pizzas: Practical Experience of Teaching OWL-DL: Common Errors & Common Patterns
    Engineering Knowledge in the Age of the SemanticWeb (2004), pp. 63-81.
    by Alan Rector, Nick Drummond, Matthew Horridge, Jeremy Rogers, Holger Knublauch, Robert Stevens, Hai Wang, Chris Wroe
    posted to reasoning protege owl ontology by dagmar on 2008-07-14 10:28:32 as *****
  • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1251-1255.
    by Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, Suzanna Lewis
    posted to ontology obo by dagmar on 2008-07-09 08:48:43 as ***** along with 13 people and 2 groups fgibson marck dansullivanblk AlexanderPico tmmurali jfr dullhunk cjeans leechuck sgoetz PunkRock sobolevnrm lenov baker-group csb_journal_club_public
  • A realism-based approach to the evolution of biomedical ontologies.
    AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2006), pp. 121-125.
    by W Ceusters, B Smith
    posted to ontology evolution by dagmar on 2008-07-09 08:44:42 as *****
  • Observations on new developments in composability and multi-resolution modeling
    Simulation Conference, 2007 Winter (2007), pp. 859-870.
    by PK Davis, A Tolk
    posted to model_management model_levels by dagmar on 2008-06-14 12:14:17 as *****
  • Model-Driven Development of Content-Based Image Retrieval Systems
    Digital Information Management, 2006 1st International Conference on (2007), pp. 137-144.
    by Temenushka Ignatova
    posted to mda imagedb by dagmar on 2008-06-14 11:52:44 as **
  • Semantic Annotations for WSDL and XML Schema
    W3C Recommendation (June 2007)
    edited by Joel Farrell, Holger Lausen
    posted to xmls wsdl semantics sawsdl by dagmar on 2008-06-02 07:41:01 as ***
  • Chaos and birhythmicity in a model for circadian oscillations of the PER and TIM proteins in drosophila
    Journal of theoretical biology, Vol. 198, No. 3. (7 June 1999), pp. 445-459.
    by JC Leloup, A Goldbeter
    posted to sbml samplemodels by dagmar on 2008-05-08 19:54:41 as **
  • Mathematical Markup Language (MathML) Version 2.0 (Second Edition)
    (2003)
    by Ron Ausbrooks, Stephen Buswell, David Carlisle, Stephane Dalmas, Stan Devitt, Angel Diaz, Max Froumentin, Roger Hunter, Patrick Ion, Michael Kohlhase, Robert Miner, Nico Poppelier, Bruce Smith, Neil Soiffer, Robert Sutor, Stephen Watt
    edited by David Carlisle, Patrick Ion, Robert Miner, Nico Poppelier
    posted to mathml by dagmar on 2008-05-05 13:37:52 as ** along with 1 person lenov
  • XML Path Language (XPath)
    (1999)
    by World
    edited by James Clark, Steve De Rose
    posted to xpath by dagmar on 2008-05-05 13:12:29 as **
  • A simple scheme for annotating SBML with references to controlled vocabularies and database entries
    (8 December 2005)
    by Nicolas Le Novère, Andrew Finney
    posted to semantics sbml annotation by dagmar on 2008-04-29 08:00:01 as ***
  • SABIO-RK: Integration and Curation of Reaction Kinetics Data
    Data Integration in the Life Sciences (2006), pp. 94-103.
    by Ulrike Wittig, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Stefanie Anstein, Jasmin Saric, Isabel Rojas
    posted to sabio-rk by dagmar on 2008-04-23 15:24:13 as **
  • SBMLmerge, a system for combining biochemical network models.
    Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 1. (2006), pp. 62-71.
    by M Schulz, J Uhlendorf, E Klipp, W Liebermeister
    posted to sbmlmerge model_management model_components by dagmar on 2008-04-23 15:06:51 as ***** along with 1 person and 1 group lenov dIEMoSIRIS
  • The Estimation of Kinetic Parameters in Systems Biology by Comparing Molecular Interaction Fields of Enzymes
    (2006)
    by M Stein, RR Gabdoulline, B Besson, RC Wade
    posted to sabio-rk model_management by dagmar on 2008-04-23 15:00:47 as ***** along with 1 group dIEMoSIRIS
  • The virtual cell: an integrated modeling environment for experimental and computational cell biology.
    Annals of the New York Academy of Sciences, Vol. 971 (October 2002), pp. 595-596.
    by II Moraru, JC Schaff, BM Slepchenko, LM Loew
    posted to simulation_tools vcell by dagmar on 2008-04-21 14:04:24 as **
  • A Survey of UML Models to XML Schemas Transformations
    Web Information Systems Engineering – WISE 2007 (2007), pp. 184-195.
    by Eladio Domínguez, Jorge Lloret, Beatriz Pérez, Áurea Rodríguez, Ángel Rubio, María Zapata
    posted to xml2uml by dagmar on 2008-04-18 15:13:36 as ***** along with 1 person leonardo
  • Fusing and Composing Macromolecular Regulatory Network Models
    (March 2007), pp. 337-344.
    by R Randhawa, CA Shaffer, JJ Tyson
    posted to model model_components by dagmar on 2008-04-18 14:26:54 as ***** along with 2 groups dIEMoSIRIS compneur
  • SBML Extensions for Level 3: Experiments, Simulation, Parameters, Results and Plots
    (March 2008)
    by Fedor Kopalov
    posted to biouml miase sbml by dagmar on 2008-03-25 13:04:51 as read along with 1 group compneur
  • SPDBS: An SBML-Based Biochemical Pathway Database System
    Computational Intelligence and Bioinformatics (2006), pp. 543-550.
    by Tae-Sung Jung, Kyoung-Ran Kim, Seung-Hyun Jung, Tae-Kyung Kim, Myung-Sang Ahn, Jong-Hak Lee, Wan-Sup Cho
    posted to database model_management sbml by dagmar on 2008-03-10 11:11:08 as ***** along with 1 person honglian
  • An Efficient Storage Model for the SBML Documents Using Object Databases
    Data Mining and Bioinformatics (2006), pp. 94-105.
    by Seung-Hyun Jung, Tae-Sung Jung, Tae-Kyung Kim, Kyoung-Ran Kim, Jae-Soo Yoo, Wan-Sup Cho
    posted to database model_management sbml by dagmar on 2008-03-10 10:36:45 as ***** along with 1 person honglian
  • Representing XML Schema in UML - A UML Profile for XML Schema
    (2004)
    by Martin Bernauer, Gerti Kappel, Gerhard Kramler
    posted to modeling uml xml2uml by dagmar on 2008-02-29 12:02:26 as **
  • Representing XML Schema in UML – A Comparison of Approaches
    Web Engineering (2004), pp. 440-444.
    by Martin Bernauer, Gerti Kappel, Gerhard Kramler
    posted to modeling uml xml2uml by dagmar on 2008-02-29 11:53:07 as ****
  • XML Conceptual Modeling Using UML
    Conceptual Modeling — ER 2000 (2000), pp. 291-307.
    by Rainer Conrad, Dieter Scheffner, Christoph
    posted to modeling uml xml2uml by dagmar on 2008-02-29 11:49:28 as ***** along with 1 person cschie
  • From Ontology to Relational Databases
    Conceptual Modeling for Advanced Application Domains (2004), pp. 278-289.
    by Anuradha Gali, Cindy X Chen, Kajal T Claypool, Rosario Uceda-Sosa
    posted to database owl by dagmar on 2008-02-28 19:36:33 as **** along with 1 person stephane-jean
  • Storing and Querying Ontologies in Logical Databases
    (September 2003), pp. 329-348.
    by Timo Weithoner, Thorsten Liebig, Gunther Specht
    posted to database owl by dagmar on 2008-02-28 19:32:52 as ** along with 1 person grobijan
  • Querying Ontologies in Relational Database Systems
    Data Integration in the Life Sciences (2005), pp. 63-79.
    by Silke Trißl, Ulf Leser
    posted to database mapping ontology owl by dagmar on 2008-02-28 10:00:19 as *****
  • Bridging the gap between OWL and relational databases
    (2007), pp. 807-816.
    by Boris Motik, Ian Horrocks, Ulrike Sattler
    posted to database kisaobrowser owl by dagmar on 2008-02-28 09:53:26 as ***** along with 1 person pchampin
  • DFG Research Training Group 1387/1: dIEM oSiRiS - Integrative Development of Modelling and Simulation Methods for Regenerative Systems
    it - Information Technology, Vol. 49, No. 6. (2007), pp. 388-395.
    by Adelinde M Uhrmacher, Arndt Rolfs, Jana Frahm
    posted to diemosiris by dagmar on 2008-02-27 11:47:02 as *** along with 1 person carmaus
  • Towards DEVS Meta Language
    (2006), pp. 69-73.
    by Vladimír Janoušek, Petr Polášek, Pavel Slavíček
    posted to devs devsml by dagmar on 2008-02-27 11:46:43 as ***** along with 1 person carmaus
  • LIGAND: database of chemical compounds and reactions in biological pathways.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 402-404.
    by S Goto, Y Okuno, M Hattori, T Nishioka, M Kanehisa
    posted to converter kegg sbml by dagmar on 2008-02-25 17:05:21 as * along with 6 people sim82 alexg blackbart koerner massivemayhem shung
  • CellML2SBML: conversion of CellML into SBML
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 1018-1020.
    by Maria J Schilstra, Lu Li, Joanne Matthews, Andrew Finney, Michael Hucka, Nicolas Le Novere
    posted to cellml converter sbml by dagmar on 2008-02-25 16:48:51 as *
  • 1 DEVSML: Automating DEVS Execution Over SOA Towards Transparent Simulators
    (March 2007), pp. 287-295.
    by Saurabh Mittal, José L Risco-Martín, Bernard P Zeigler
    posted to devs devsml by dagmar on 2008-02-20 14:57:26 as *****
  • Kinetic Modeling Using BioPAX Ontology
    Bioinformatics and Biomedicine, 2007. BIBM 2007. IEEE International Conference on (2007), pp. 339-348.
    by Oliver Ruebenacker, Ion Moraru, James C Schaff, Michael L Blinov
    posted to no-tag by dagmar on 2008-02-19 14:15:40 as **
  • Challenges in Integrating Biological Data Sources
    Journal of Computational Biology, Vol. 2, No. 4. (1995), pp. 557-572.
    by Susan Davidson, Christian G Overton, Peter Buneman
    posted to no-tag by dagmar on 2008-02-19 14:09:47 as * along with 1 person wnpx
  • A vision for the future of genomics research
    Nature, Vol. 422 (April 2003), pp. 835-847.
    by FS Collins, ED Green, AE Guttmacher, MS Guyer
    posted to no-tag by dagmar on 2008-02-19 14:04:51 as *
  • Adding semantics in kinetics models of biochemical pathways.
    Proceedings of the 2nd International Symposium on experimental standard conditions of enzyme characterizations (2006)
    by N Le Novère, M Courtot, C Laibe
    posted to sbo by dagmar on 2008-02-15 13:42:51 as ** along with 1 person lenov
  • Apache Xindice XML Database
    (2002)
    by Apache XML Project
    posted to xindice xmldb by dagmar on 2008-02-15 13:26:31 as **
  • Die integrative Entwicklung von Modellierungs- und Simulationsmethoden für regenerative Systeme
    (June 2007), pp. 155-155.
    by Adelinde Uhrmacher
    posted to diemosiris by dagmar on 2008-02-15 12:56:48 as read
  • SQL:1999 & SQL:2003
    (February 2003)
    by Can Türker
    posted to data database sql by dagmar on 2008-02-13 14:59:11 as read
  • SQL multimedia and application packages (SQL/MM)
    SIGMOD Rec., Vol. 30, No. 4. (December 2001), pp. 97-102.
    by Jim Melton, Andrew Eisenberg
    posted to imagedb sql sqlmm by dagmar on 2008-01-28 05:07:51 as ** along with 1 person network01
  • The Petri Net Markup Language
    Petri Net Technology for Communication-Based Systems (2003), pp. 124-144.
    by Michael Weber, Ekkart Kindler
    posted to petrinets pnml by dagmar on 2008-01-25 08:08:02 as ***** along with 1 person and 1 group wnpx dIEMoSIRIS
  • notes The Biology Petri Net Markup Language
    (2002)
    by Ming Chen, Andreas Freier, Jacob Köhler, Alexander Regg
    posted to petrinets pnml by dagmar on 2008-01-25 08:02:31 as ***** along with 1 person and 1 group wnpx dIEMoSIRIS
  • Integration of multi-scale biosimulation models via light-weight semantics
    Vol. 13 (2008), pp. 414-425.
    by John H Gennari1, Maxwell L Neal1, Brian E Carlson, Daniel L Cook
    posted to integration model_components semantics by dagmar on 2008-01-15 07:56:05 as *****
  • Stochastic Simulation of Chemical Kinetics - , 58(1):35 - Full Text
    Annual Review of Physical Chemistry, Vol. 58, No. 1. (2007), pp. 35-57.
    by DT Gillespie
    posted to kisao simulation stochastic by dagmar on 2008-01-15 07:51:46 as ***
  • The role of composition and aggregation in modeling macromolecular regulatory networks
    (2006), pp. 1628-1636.
    by Clifford A Shaffer, Ranjit Randhawa, John J Tyson
    posted to composition model_components sbml by dagmar on 2008-01-14 21:04:31 as **
  • Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry
    pp. 5313-5329.
    by Bas Teusink
    posted to model model_components model_management by dagmar on 2008-01-14 10:39:30 as *****
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