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djkt popgen [86 articles]

Recent papers added to djkt library classified by the tag popgen. You can also see everyone's popgen.
  • Viral population estimation using pyrosequencing.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by N Eriksson, L Pachter, Y Mitsuya, SY Rhee, C Wang, B Gharizadeh, M Ronaghi, RW Shafer, N Beerenwinkel
    posted to virus popgen metagenomics diversity by djkt on 2008-07-24 23:16:52 as read along with 1 person and 1 group bmaust iSEEM
  • Inference of population genetic parameters in metagenomics: A clean look at messy data
    Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1320-1327.
    by Philip L Johnson, Montgomery Slatkin
    posted to popgen metagenomics by djkt on 2008-07-24 23:14:43 as read along with 2 people and 1 group jmeppley bluto iSEEM
  • Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e177.
    by Sheri L Simmons, Genevieve Dibartolo, Vincent J Denef, Daniela S Goltsman, Michael P Thelen, Jillian F Banfield
    posted to popgen microbes metagenomics by djkt on 2008-07-23 03:21:12 as ** along with 1 group iSEEM
  • Bayesian Survival Analysis in Genetic Association Studies.
    Bioinformatics (Oxford, England) (9 July 2008)
    by Ioanna Tachmazidou, Toby Andrew, Claudio J J Verzilli, Michael R R Johnson, Maria De D Iorio
    posted to popgen association by djkt on 2008-07-17 17:59:31 as ** along with 1 person jyuh
  • Confounding between recombination and selection, and the Ped/Pop method for detecting selection
    Genome Res. (10 July 2008), gr.067181.107.
    by Paul F O'Reilly, Ewan Birney, David J Balding
    posted to selection recombination popgen by djkt on 2008-07-17 17:37:04 as **
  • Tracing Sub-Structure in the European American Population with PCA-Informative Markers
    PLoS Genet, Vol. 4, No. 7. (4 July 2008), e1000114.
    by Peristera Paschou, Petros Drineas, Jamey Lewis, Caroline M Nievergelt, Deborah A Nickerson, Joshua D Smith, Paul M Ridker, Daniel I Chasman, Ronald M Krauss, Elad Ziv
    posted to popgen human evolution association by djkt on 2008-07-07 17:04:43 as **
  • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1020-1029.
    by Ines Hellmann, Yuan Mang, Zhiping Gu, Peter Li, de La, Andrew G Clark, Rasmus Nielsen
    posted to sequencing popgen human by djkt on 2008-07-01 19:13:57 as ** along with 4 people serdarbozdag balicea Neeperando APRegier
  • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.
    Nature genetics (22 June 2008)
    by Kristi Kerkel, Alexandra Spadola, Eric Yuan, Jolanta Kosek, Le Jiang, Eldad Hod, Kerry Li, Vundavalli V V Murty, Nicole Schupf, Eric Vilain, Mitzi Morris, Fatemeh Haghighi, Benjamin Tycko
    posted to snps popgen epigenetics by djkt on 2008-06-27 20:01:22 as ** along with 2 people oelemento rschulz
  • Estimating coverage and power for genetic association studies using near-complete variation data
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 841-843.
    by Tushar R Bhangale, Mark J Rieder, Deborah A Nickerson
    posted to snps power popgen association by djkt on 2008-06-27 19:53:12 as ** along with 2 people jyuh caseybrown
  • A Drastic Reduction in the Life Span of Cystatin C L68Q Carriers Due to Life-Style Changes during the Last Two Centuries
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000099.
    by Astridur Palsdottir, Agnar Helgason, Snaebjorn Palsson, Hans T Bjornsson, Birkir T Bragason, Solveig Gretarsdottir, Unnur Thorsteinsdottir, Elias Olafsson, Kari Stefansson
    posted to popgen evolution ecology by djkt on 2008-06-21 01:14:54 as ** along with 1 person Schmidtc
  • Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1629-1631.
    by JJ Emerson, Margarida Cardoso-Moreira, Justin O Borevitz, Manyuan Long
    posted to sv selection popgen fly evolution by djkt on 2008-06-20 16:21:25 as ** along with 7 people popgen emptyhb Neeperando balicea APRegier skumagai dinnes
  • Linkage disequilibrium — understanding the evolutionary past and mapping the medical future
    Nature Reviews Genetics, Vol. 9, No. 6., pp. 477-485.
    by Montgomery Slatkin
    posted to review popgen human by djkt on 2008-06-18 17:32:32 as ** along with 3 people jyuh jasonflannick dchughes
  • Genetic determinants of phenotypic diversity in humans
    Genome Biology, Vol. 9 (24 April 2008), 215.
    by Nazli G Rahim, Olivier Harismendy, Eric J Topol, Kelly A Frazer
    posted to review popgen human by djkt on 2008-06-03 05:56:58 as ** along with 2 people jyuh caseybrown
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to sv popgen by djkt on 2008-05-01 18:41:59 as ** along with 15 people and 1 group jyuh chrisamiller maximilianh vplagnol kintoki chad_davis Ema hpaces aprasad kaniko psique shikin balicea dchughes bpb GeneGo
  • Interpreting principal component analyses of spatial population genetic variation
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 646-649.
    by John Novembre, Matthew Stephens
    posted to popgen by djkt on 2008-04-28 21:07:19 as ** along with 2 people jyuh laharrin
  • Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia
    Science (27 March 2008), 1155174.
    by Tom Walsh, Jon M Mcclellan, Shane E Mccarthy, Anjene M Addington, Sarah B Pierce, Greg M Cooper, Alex S Nord, Mary Kusenda, Dheeraj Malhotra, Abishek Bhandari, Sunday M Stray, Caitlin F Rippey, Patricia Roccanova, Vlad Makarov, B Lakshmi, Robert L Findling, Linmarie Sikich, Thomas Stromberg, Barry Merriman, Nitin Gogtay, Philip Butler, Kristen Eckstrand, Laila Noory, Peter Gochman, Robert Long, Zugen Chen, Sean Davis, Carl Baker, Evan E Eichler, Paul S Meltzer, Stanley F Nelson, Andrew B Singleton, Ming K Lee, Judith L Rapoport, Mary-Claire King, Jonathan Sebat
    posted to sv schizophrenia popgen by djkt on 2008-04-25 17:22:54 as ** along with 7 people and 1 group renatomilani lisa1 giovanni sekulerlab GustavoLacerda MWagner applebyb VisionLab
  • Exploring Population Genetic Models With Recombination Using Efficient Forward-Time Simulations
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2417-2427.
    by Badri Padhukasahasram, Paul Marjoram, Jeffrey D Wall, Carlos D Bustamante, Magnus Nordborg
    posted to simulation recombination popgen by djkt on 2008-04-23 03:22:29 as ** along with 2 people schaffner364 badripk
  • Analysis of Chimpanzee History Based on Genome Sequence Alignments
    posted to evolution popgen primates by djkt on 2008-04-19 01:42:05 as **
  • Identifying Selected Regions from Heterozygosity and Divergence Using a Light-Coverage Genomic Dataset from Two Human Populations
    posted to human popgen sequencing by djkt on 2008-04-16 19:21:31 as **
  • Gene–Environment Interaction in Yeast Gene Expression
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e83.
    by Erin N Smith, Leonid Kruglyak
    posted to expression popgen yeast by djkt on 2008-04-15 22:25:53 as **
  • Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster
    Genetics (3 February 2008), genetics.107.082032.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to expression fly popgen qtl by djkt on 2008-04-02 05:07:15 as ** along with 4 people and 3 groups dpollard mimulus_99 brant stajich RockmanLab cis-regulatory-evolution EisenLab
  • Genetic basis of fitness differences in natural populations
    Nature, Vol. 452, No. 7184. (13 March 2008), pp. 169-175.
    by Hans Ellegren, Ben C Sheldon
    posted to ecology popgen qtl variation by djkt on 2008-03-12 19:45:01 as ** along with 1 person skumagai
  • No evidence of a Neanderthal contribution to modern human diversity
    Genome Biology, Vol. 9, No. 2. (2008)
    by Jason Hodgson, Todd Disotell
    posted to neanderthal popgen by djkt on 2008-03-12 15:28:54 as ** along with 1 person neils
  • Sequence Variants in the RNF212 Gene Associate with Genome-Wide Recombination Rate
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1398-1401.
    by Augustine Kong, Gudmar Thorleifsson, Hreinn Stefansson, Gisli Masson, Agnar Helgason, Daniel F Gudbjartsson, Gudrun M Jonsdottir, Sigurjon A Gudjonsson, Sverrir Sverrisson, Theodora Thorlacius, Aslaug Jonasdottir, Gudmundur A Hardarson, Stefan T Palsson, Michael L Frigge, Jeffrey R Gulcher, Unnur Thorsteinsdottir, Kari Stefansson
    posted to popgen recombination by djkt on 2008-03-07 19:35:30 as ** along with 1 person smbe2008
  • High-Resolution Mapping of Crossovers Reveals Extensive Variation in Fine-Scale Recombination Patterns Among Humans
    Science (31 January 2008), 1151851.
    by Graham Coop, Xiaoquan Wen, Carole Ober, Jonathan K Pritchard, Molly Przeworski
    posted to popgen recombination by djkt on 2008-03-07 19:33:13 as ** along with 3 people and 1 group stajich lisa1 biomcgary Berkeley Mycology
  • Natural selection has driven population differentiation in modern humans.
    Nat Genet (3 February 2008)
    by Luis B B Barreiro, Guillaume Laval, Hélène Quach, Etienne Patin, Lluís Quintana-Murci
    posted to human popgen selection by djkt on 2008-02-27 19:25:07 as ** along with 3 people and 1 group shoshin qwermish wsjames Oxford Virology
  • Proportionally more deleterious genetic variation in European than in African populations
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 994-997.
    by Kirk E Lohmueller, Amit R Indap, Steffen Schmidt, Adam R Boyko, Ryan D Hernandez, Melissa J Hubisz, John J Sninsky, Thomas J White, Shamil R Sunyaev, Rasmus Nielsen, Andrew G Clark, Carlos D Bustamante
    posted to popgen selection by djkt on 2008-02-21 19:21:34 as ** along with 3 people and 1 group ramensky caseybrown mailund Fasting, food and evolution
  • Genotype, haplotype and copy-number variation in worldwide human populations
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 998-1003.
    by Mattias Jakobsson, Sonja W Scholz, Paul Scheet, Raphael J Gibbs, Jenna M Vanliere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro, Jose M Bras, Jennifer C Schymick, Dena G Hernandez, Bryan J Traynor, Javier Simon-Sanchez, Mar Matarin, Angela Britton, Joyce van de Leemput, Ian Rafferty, Maja Bucan, Howard M Cann, John A Hardy, Noah A Rosenberg, Andrew B Singleton
    posted to popgen snps sv by djkt on 2008-02-21 19:20:07 as ** along with 5 people and 1 group jyuh Archaeogenetics ramensky mailund thomaskelder Fasting, food and evolution
  • Genome-Wide Association Identifies a Common Variant in the Reelin Gene That Increases the Risk of Schizophrenia Only in Women
    PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e28.
    by Sagiv Shifman, Martina Johannesson, Michal Bronstein, Sam X Chen, David A Collier, Nicholas J Craddock, Kenneth S Kendler, Tao Li, Michael O'donovan, Anthony F O'neill, Michael J Owen, Dermot Walsh, Daniel R Weinberger, Cuie Sun, Jonathan Flint, Ariel Darvasi
    posted to association popgen proteins reelin snps by djkt on 2008-02-15 19:31:19 as ** along with 2 people xingxu swemartina
  • Cis and trans regulatory effects contribute to natural variation in transcriptome of Drosophila melanogaster
    Mol Biol Evol (12 November 2007), msm247.
    by Anne Genissel, Lauren M Mcintyre, Marta L Wayne, Sergey V Nuzhdin
    posted to expression fly popgen by djkt on 2008-02-04 16:43:08 as ** along with 1 person mimulus_99
  • Testing for Archaic Hominin Admixture on the X Chromosome: Model Likelihoods for the Modern Human RRM2P4 Region From Summaries of Genealogical Topology Under the Structured Coalescent
    Genetics, Vol. 178, No. 1. (1 January 2008), pp. 427-437.
    by Murray P Cox, Fernando L Mendez, Tatiana M Karafet, Maya M Pilkington, Sarah B Kingan, Giovanni Destro-Bisol, Beverly I Strassmann, Michael F Hammer
    posted to evolution popgen primates by djkt on 2008-01-18 01:56:42 as ** along with 1 person Archaeogenetics
  • Population Genetics of Polymorphism and Divergence Under Fluctuating Selection
    Genetics, Vol. 178, No. 1. (1 January 2008), pp. 325-337.
    by Emilia Huerta-Sanchez, Rick Durrett, Carlos D Bustamante
    posted to popgen selection by djkt on 2008-01-18 01:53:37 as **
  • Dissecting the Genetic Components of Adaptation of Escherichia coli to the Mouse Gut
    PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e2.
    by Antoine Giraud, Safia Arous, Marianne D Paepe, Valérie Gaboriau-Routhiau, Jean-Christophe Bambou, Sabine Rakotobe, Ariel B Lindner, François Taddei, Nadine Cerf-Bensussan
    posted to evolution microbes popgen by djkt on 2008-01-11 18:14:44 as **
  • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    Genome Res. (7 November 2007), gr.6691007.
    by Peter Andolfatto
    posted to fly popgen selection by djkt on 2007-12-05 22:15:06 as ** along with 3 people and 1 group dpollard usagi-kirin mimulus_99 EisenLab
  • Discerning the ancestry of European Americans in genetic association studies
    PLoS Genetics, Vol. preprint, No. 2007. (1 November 2007), e236.eor.
    by Alkes Price, Johannah L Butler, Nick Patterson, Cristian Capelli, Vincenzo L Pascali, Francesca Scarnicci, Andres Ruiz-Linares, Leif C Groop, Angelica A Saetta, Penelope Korkolopoulou, Uri Seligsohn, Alicja Waliszewska, Christine Schirmer, Kristin Ardlie, Alexis Ramos, James Nemesh, Lori Arbeitman, David B Goldstein, David Reich, Joel Hirschhorn
    posted to association popgen snps by djkt on 2007-11-23 20:26:59 as **
  • Genetic Variation and Population Structure in Native Americans
    PLoS Genetics, Vol. 3, No. 11. (1 November 2007), e185.
    by Sijia Wang, Cecil M Lewis, Mattias Jakobsson, Sohini Ramachandran, Nicolas Ray, Gabriel Bedoya, Winston Rojas, Maria V Parra, Julio A Molina, Carla Gallo, Guido Mazzotti, Giovanni Poletti, Kim Hill, Ana M Hurtado, Damian Labuda, William Klitz, Ramiro Barrantes, Maria C Bortolini, Francisco M Salzano, Maria L Petzl-Erler, Luiza T Tsuneto, Elena Llop, Francisco Rothhammer, Laurent Excoffier, Marcus W Feldman, Noah A Rosenberg, Andrés Ruiz-Linares
    posted to popgen snps by djkt on 2007-11-23 20:24:35 as **
  • Genome-wide detection and characterization of positive selection in human populations
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 913-918.
    by Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H Byrne, Steven A Mccarroll, Rachelle Gaudet, Stephen F Schaffner, Eric S Lander
    posted to popgen selection by djkt on 2007-10-17 19:45:06 as ** along with 7 people jasonflannick brian dchughes ramensky hms ryanraaum iris42
  • Neanderthals in central Asia and Siberia
    Nature (30 September 2007)
    by Johannes Krause, Ludovic Orlando, David Serre, Bence Viola, Kay Prüfer, Michael P Richards, Jean-Jacques Hublin, Catherine Hänni, Anatoly P Derevianko, Svante Pääbo
    posted to neanderthal popgen by djkt on 2007-10-17 19:42:15 as ** along with 4 people Archaeogenetics dchughes EsepBib ryanraaum
  • A second generation human haplotype map of over 3.1 million SNPs
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861.
    posted to popgen snps by djkt on 2007-10-17 19:39:50 as ** along with 9 people and 2 groups skumagai jasonflannick jyuh dchughes frohike lp2 ryanraaum xingxu psique parkinson's disease references Bioinformatics
  • A sequence-based variation map of 8.27 million SNPs in inbred mouse strains
    Nature (29 July 2007)
    by Kelly A Frazer, Eleazar Eskin, Hyun M Kang, Molly A Bogue, David A Hinds, Erica J Beilharz, Robert V Gupta, Julie Montgomery, Matt M Morenzoni, Geoffrey B Nilsen, Charit L Pethiyagoda, Laura L Stuve, Frank M Johnson, Mark J Daly, Claire M Wade, David R Cox
    posted to popgen rodents snps by djkt on 2007-08-29 19:53:41 as ** along with 1 group Bioinformatics
  • A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms
    posted to expression popgen by djkt on 2007-06-09 04:22:17 as **
  • Demographic Histories and Patterns of Linkage Disequilibrium in Chinese and Indian Rhesus Macaques
    Science, Vol. 316, No. 5822. (13 April 2007), pp. 240-243.
    by Ryan D Hernandez, Melissa J Hubisz, David A Wheeler, David G Smith, Betsy Ferguson, Jeffrey Rogers, Lynne Nazareth, Amit Indap, Traci Bourquin, John Mcpherson, Donna Muzny, Richard Gibbs, Rasmus Nielsen, Carlos D Bustamante
    posted to popgen primates by djkt on 2007-04-13 18:28:47 as ** along with 2 people and 2 groups dchughes usagi-kirin G4ID Genetics-of-Gambling
  • A High-Resolution Single Nucleotide Polymorphism Genetic Map of the Mouse Genome
    PLoS Biology, Vol. 4, No. 12. (1 December 2006), e395.
    by Sagiv Shifman, Jordana T Bell, Richard R Copley, Martin S Taylor, Robert W Williams, Richard Mott, Jonathan Flint
    posted to popgen recombination rodents by djkt on 2006-11-16 22:19:23 as **
  • Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera.
    Science, Vol. 314, No. 5799. (27 October 2006), pp. 642-645.
    by CW Whitfield, SK Behura, SH Berlocher, AG Clark, JS Johnston, WS Sheppard, DR Smith, AV Suarez, D Weaver, ND Tsutsui
    posted to evolution popgen by djkt on 2006-11-02 19:11:44 as ***
  • Regional Admixture Mapping and Structured Association Testing: Conceptual Unification and an Extensible General Linear Model
    PLoS Genetics, Vol. preprint, No. 2006. (1 July 2006), e137.eor.
    by David T Redden, Jasmin Divers, Laura Vaughan, Hemant K Tiwari, Mark M Beasley, Jose R Fernandez, Robert P Kimberly, Rui Feng, Miguel Padilla, Nianjun Lui, Michael B Miller, David B Allison
    posted to association popgen qtl snps by djkt on 2006-08-08 21:17:43 as read along with 1 person oilcan
  • The influence of recombination on human genetic diversity
    PLoS Genetics, Vol. preprint, No. 2006. (1 July 2006)
    by Chris C Spencer, Panagiotis Deloukas, Sarah Hunt, James Mullikin, Simon R Myers, Bernard Silverman, Peter Donnelly, David Bentley, Gil Mcvean
    posted to popgen recombination by djkt on 2006-08-07 18:24:40 as **
  • Genomic signatures of positive selection in humans and the limits of outlier approaches
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 980-989.
    by Joanna L Kelley, Jennifer Madeoy, John C Calhoun, Willie Swanson, Joshua M Akey
    posted to evolution popgen proteins snps by djkt on 2006-08-07 18:18:20 as *** along with 1 person and 1 group hdopazo BioinfoCIPF
  • Copy number variation: New insights in genome diversity
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 949-961.
    by Jennifer L Freeman, George H Perry, Lars Feuk, Richard Redon, Steven A Mccarroll, David M Altshuler, Hiroyuki Aburatani, Keith W Jones, Chris Tyler-Smith, Matthew E Hurles, Nigel P Carter, Stephen W Scherer, Charles Lee
    posted to indel popgen review by djkt on 2006-08-07 18:16:31 as *** along with 7 people and 3 groups jasonflannick debasis bpb balicea dchughes jri bioguru2000 Bioinformatics G4ID Genetics-of-Gambling
  • Heterozygous carriers of Nijmegen Breakage Syndrome have a distinct gene expression phenotype
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 973-979.
    by Vivian G Cheung, Warren J Ewens
    posted to expression popgen snps by djkt on 2006-08-07 18:15:32 as ***
  • Genetic traces of ancient demography.
    Proc Natl Acad Sci U S A, Vol. 95, No. 4. (17 February 1998), pp. 1961-1967.
    by HC Harpending, MA Batzer, M Gurven, LB Jorde, AR Rogers, ST Sherry
    posted to evolution popgen by djkt on 2006-08-04 01:59:31 as **
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