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dragonrez library [280 articles]

Статьи, недавно добавленные в библиотеку dragonrez .
  • Mining Molecular Fragments: Finding Relevant Substructures of Molecules
    (2002)
    by Christian Borgelt, Michael R Berthold
    posted to graph_mining by dragonrez on 2008-07-27 01:51:36 as **
  • Comparing graph representations of protein structure for mining family-specific residue-based packing motifs.
    J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 657-671.
    by J Huan, D Bandyopadhyay, W Wang, J Snoeyink, J Prins, A Tropsha
    posted to graph_mining by dragonrez on 2008-07-27 01:20:07 as ** along with 4 people and 2 groups pansapiens aalibes shuns marcius BioinfoCIPF SGU-CIPF
  • Mining closed relational graphs with connectivity constraints
    (2005), pp. 324-333.
    by Xifeng Yan, Jasmine X Zhou, Jiawei Han
    posted to graph_mining by dragonrez on 2008-07-27 00:25:06 as ** along with 2 people bigbossman graphminer
  • Finding Frequent Patterns in a Large Sparse Graph*
    Data Mining and Knowledge Discovery, Vol. 11, No. 3. (November 2005), pp. 243-271.
    by Michihiro Kuramochi, George Karypis
    posted to graph_mining by dragonrez on 2008-07-27 00:23:38 as **
  • Mining coherent dense subgraphs across massive biological networks for functional discovery.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by H Hu, X Yan, Y Huang, J Han, XJ Zhou
    posted to graph_mining by dragonrez on 2008-07-26 23:36:57 as ** along with 1 person and 1 group lfriedl kdl
  • gSpan: Graph-based substructure pattern mining
    (2002)
    by X Yan, J Han
    posted to graph_mining by dragonrez on 2008-07-26 22:42:01 as ** along with 3 people llamerada InternetAlgorithms cakmak
  • An Efficient Algorithm for Discovering Frequent Subgraphs
    IEEE Trans. on Knowl. and Data Eng., Vol. 16, No. 9. (September 2004), pp. 1038-1051.
    by Michihiro Kuramochi, George Karypis
    posted to graph_mining by dragonrez on 2008-07-26 22:34:57 as **
  • An Apriori-Based Algorithm for Mining Frequent Substructures from Graph Data
    Principles of Data Mining and Knowledge Discovery (2000), pp. 13-23.
    by Akihiro Inokuchi, Takashi Washio, Hiroshi Motoda
    posted to graph_mining by dragonrez on 2008-07-26 22:19:47 as **
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to no-tag by dragonrez on 2008-07-25 22:19:32 as ** along with 19 people chad_davis Evangelia balicea marck paolomarcatili sanchezbuelna cabbagesofdoom xingxu mjoach jyuh chrissp100 zwang roys brianb friendpine Ema neils tmmurali phoenixzxl
  • The Biomolecular Interaction Network Database and related tools 2005 update.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, D Betel, B Bobechko, K Boutilier, E Burgess, K Buzadzija, R Cavero, C D'Abreo, I Donaldson, D Dorairajoo, MJ Dumontier, MR Dumontier, V Earles, R Farrall, H Feldman, E Garderman, Y Gong, R Gonzaga, V Grytsan, E Gryz, V Gu, E Haldorsen, A Halupa, R Haw, A Hrvojic, L Hurrell, R Isserlin, F Jack, F Juma, A Khan, T Kon, S Konopinsky, V Le, E Lee, S Ling, M Magidin, J Moniakis, J Montojo, S Moore, B Muskat, I Ng, JP Paraiso, B Parker, G Pintilie, R Pirone, JJ Salama, S Sgro, T Shan, Y Shu, J Siew, D Skinner, K Snyder, R Stasiuk, D Strumpf, B Tuekam, S Tao, Z Wang, M White, R Willis, C Wolting, S Wong, A Wrong, C Xin, R Yao, B Yates, S Zhang, K Zheng, T Pawson, BF Ouellette, CW Hogue
    posted to pathway database by dragonrez on 2008-07-25 19:48:51 as ** along with 5 people and 3 groups yas balajis zlu frohike dagmar T_lab dIEMoSIRIS compneur
  • The KEGG databases at GenomeNet
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 42-46.
    by Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya
    posted to pathway database by dragonrez on 2008-07-25 19:45:23 as ** along with 2 people opheliav michC
  • Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression.
    BMC Bioinformatics, Vol. 7 Suppl 2 (26 September 2006)
    by Raja Loganantharaj, Satish Cheepala, John Clifford
    posted to clustering by dragonrez on 2008-07-23 00:19:24 as ** along with 1 person jfr
  • Evaluation of clustering algorithms for gene expression data.
    BMC bioinformatics, Vol. 7 Suppl 4 (2006)
    by S Datta, S Datta
    posted to clustering by dragonrez on 2008-07-23 00:13:51 as **
  • A practical comparison of two K-Means clustering algorithms.
    BMC bioinformatics, Vol. 9 Suppl 6 (2008)
    by GA Wilkin, X Huang
    posted to k-means by dragonrez on 2008-07-23 00:04:54 as **
  • Genetic weighted k-means algorithm for clustering large-scale gene expression data.
    BMC bioinformatics, Vol. 9 Suppl 6 (2008)
    by FX Wu
    posted to k-means by dragonrez on 2008-07-22 23:53:59 as **
  • Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization
    BMC Bioinformatics, Vol. 9 (23 April 2008), 210.
    by Kin-On Cheng, Ngai-Fong Law, Wan-Chi Siu, Alan W Liew
    posted to biclustering by dragonrez on 2008-07-22 23:33:03 as **
  • Biclustering of expression data.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 93-103.
    by Y Cheng, GM Church
    posted to biclustering by dragonrez on 2008-07-22 23:27:29 as ** along with 2 people wnpx tvdbulck
  • A general framework for biclustering gene expression data.
    J Bioinform Comput Biol, Vol. 4, No. 4. (August 2006), pp. 911-933.
    by H Li, X Chen, K Zhang, T Jiang
    posted to biclustering by dragonrez on 2008-07-22 23:11:35 as ** along with 1 person dps
  • Application of simulated annealing to the biclustering of gene expression data.
    IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, Vol. 10, No. 3. (July 2006), pp. 519-525.
    by K Bryan, P Cunningham, N Bolshakova
    posted to biclustering by dragonrez on 2008-07-22 23:06:07 as **
  • Bayesian biclustering of gene expression data
    BMC Genomics, Vol. 9, No. Suppl 1. (2008)
    by Jiajun Gu, Jun Liu
    posted to biclustering by dragonrez on 2008-07-22 23:04:53 as ** along with 4 people bertelsen jfr tvdbulck yangc
  • On the equivalence between Non-negative Matrix Factorization and Probabilistic Latent Semantic Indexing
    Comput. Stat. Data Anal., Vol. 52, No. 8. (April 2008), pp. 3913-3927.
    by Chris Ding, Tao Li, Wei Peng
    posted to nmf by dragonrez on 2008-07-16 21:28:55 as **
  • Spectral Graph Theory (CBMS Regional Conference Series in Mathematics, No. 92) (Cbms Regional Conference Series in Mathematics)
    (06 February 1997)
    by Fan RK Chung
    posted to spectral clustering by dragonrez on 2008-07-16 21:14:06 as ** along with 6 people and 4 groups jekky BarrosH filippone sdvillal bigbossman jung_dalglish CMU-HCII Blog_and_Wiki_Research automatic_summarization ASR
  • Data clustering: a review
    ACM Comput. Surv., Vol. 31, No. 3. (September 1999), pp. 264-323.
    by AK Jain, MN Murty, PJ Flynn
    posted to clustering by dragonrez on 2008-07-16 03:26:47 as ** along with 43 people and 14 groups tnhh flaviovdf AbnerCYH mercutio egh ericyu karbak dgruiz pdlug thsant mapio mhay davidbrooks imouthesmp dfrankow rahul marcius stagediver sterovetta sangeetha chadhogg sdvillal dgront styliani alexhofmann gane5h ianturton bigbossman perceptron allmensch aviad_work julianpan atbrew sugarexpletive KillianKay mkolar sajan dvisoin theodora jcsilva furykerry koles paulovn video_retrieval kdl GroupLens Bioinformatics SRL insilicodrug BioinfoCIPF SGU-CIPF MScResearchRessources NDSiTransitRessources NDS106ProjectRessources NDSIntraVehicularResearch ahat Community_SSTZ
  • BioGRID: a general repository for interaction datasets.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Stark, BJ Breitkreutz, T Reguly, L Boucher, A Breitkreutz, M Tyers
    posted to no-tag by dragonrez on 2008-07-08 05:16:50 as ** along with 9 people tmmurali chasmand carlk jyuh balajis koller nm lpfernandes Evangelia
  • Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer.
    Cancer Res, Vol. 67, No. 21. (1 November 2007), pp. 10296-10303.
    by SR Setlur, TE Royce, A Sboner, JM Mosquera, F Demichelis, MD Hofer, KD Mertz, M Gerstein, MA Rubin
    posted to no-tag by dragonrez on 2008-05-09 19:38:10 as ** along with 2 people jfr oelemento
  • BicAT: a biclustering analysis toolbox.
    Bioinformatics (Oxford, England), Vol. 22, No. 10. (15 May 2006), pp. 1282-1283.
    by S Barkow, S Bleuler, A Prelic, P Zimmermann, E Zitzler
    posted to biclustering by dragonrez on 2008-05-06 21:18:56 as **
  • Greedy Approximation Algorithms for Finding Dense Components in a Graph
    Lecture Notes in Computer Science, Vol. 1913 (January 2000), pp. 84-95.
    by Moses Charikar
    posted to graph_density by dragonrez on 2008-05-06 20:26:11 as ** along with 2 people and 1 group tmmurali okarsligil Bioinformatics
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
    by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman
    posted to no-tag by dragonrez on 2008-05-03 23:07:24 as ** along with 13 people chrisamiller pkm tvdbulck tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys
  • Laminin-binding integrins in tumor progression and metastasis
    Seminars in Cancer Biology, Vol. 7, No. 3. (June 1996), pp. 119-128.
    by Barry L Ziober, Ching-Shwun Lin, Randall H Kramer
    posted to no-tag by dragonrez on 2008-05-03 18:30:52 as **
  • Pro-inflammatory cytokines affect pancreatic carcinoma cell. Endothelial cell interactions.
    JOP : Journal of the pancreas, Vol. 7, No. 5. (2006), pp. 454-464.
    by M ten Kate, LJ Hofland, PM van Koetsveld, J Jeekel, CH van Eijck
    posted to no-tag by dragonrez on 2008-05-03 00:50:25 as **
  • The expression of adhesion molecules and the influence of inflammatory cytokines on the adhesion of human pancreatic carcinoma cells to mesothelial monolayers.
    Pancreas, Vol. 32, No. 4. (May 2006), pp. 396-402.
    by WM van Grevenstein, LJ Hofland, J Jeekel, CH van Eijck
    posted to no-tag by dragonrez on 2008-05-02 23:51:51 as **
  • Systemic immune dysfunction in pancreatic cancer patients
    Langenbeck's Archives of Surgery, Vol. 392, No. 3. (May 2007), pp. 353-358.
    by Poch, Bertram, Lotspeich, Errki, Ramadani, Marco, Gansauge, Susanne, Beger, Hans, Gansauge, Frank
    posted to no-tag by dragonrez on 2008-05-02 23:14:24 as **
  • Tumor necrosis factor alpha enhances secretion of transforming growth factor beta2 in MCF-7 breast cancer cells.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 2, No. 5. (May 1996), pp. 827-835.
    by DN Danforth, MK Sgagias
    posted to cancer by dragonrez on 2008-05-02 20:26:14 as **
  • Increased levels of alpha-6 integrins are associated with the metastatic phenotype of human breast cancer cells
    Clinical and Experimental Metastasis, Vol. 17, No. 4. (1 June 1999), pp. 323-330.
    by Ratna Mukhopadhyay, Richard L Theriault, Janet E Price
    posted to no-tag by dragonrez on 2008-05-02 16:37:13 as **
  • Discovering statistically significant biclusters in gene expression data.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by A Tanay, R Sharan, R Shamir
    posted to no-tag by dragonrez on 2008-04-30 19:05:27 as ** along with 8 people and 2 groups librain carlk tvdbulck ggrot okarsligil lfriedl incovoma dps kdl Bioinformatics
  • Evaluation of gene-expression clustering via mutual information distance measure
    BMC Bioinformatics, Vol. 8 (30 March 2007), 111.
    by Ido Priness, Oded Maimon, Irad Ben-Gal
    posted to microarray by dragonrez on 2008-04-30 02:42:18 as **
  • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    by Yoav Benjamini, Yosef Hochberg
    posted to no-tag by dragonrez on 2008-04-30 02:32:53 as ** along with 13 people and 2 groups isimpson jyuh RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos rschulz Bioinformatics Regulomics_UCHSC
  • Gradient Directed Regularization
    by Jerome H Friedman, Bogdan E Popescu
    posted to no-tag by dragonrez on 2008-04-30 02:29:31 as **
  • ConnectComplete Regularization and variable selection via the elastic net
    Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 67, No. 2. (April 2005), pp. 301-320.
    by Zou Hui1, Hastie Trevor
    posted to no-tag by dragonrez on 2008-04-30 02:25:59 as **
  • The Stanford Microarray Database: implementation of new analysis tools and open source release of software.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by J Demeter, C Beauheim, J Gollub, T Hernandez-Boussard, H Jin, D Maier, JC Matese, M Nitzberg, F Wymore, ZK Zachariah, PO Brown, G Sherlock, CA Ball
    posted to no-tag by dragonrez on 2008-04-30 01:39:34 as ** along with 6 people and 1 group tvdbulck jfr balajis hpiwowar ghattem azazello MBLAB
  • VIRGO: computational prediction of gene functions.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by N Massjouni, CG Rivera, TM Murali
    posted to functional_annotation by dragonrez on 2008-04-28 02:37:54 as **
  • A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Kartik M Mani, Celine Lefebvre, Kai Wang, Wei K Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano
    posted to pathway_perturbation by dragonrez on 2008-04-23 22:54:37 as ** along with 4 people tmmurali ealloza shikin dap5087
  • A fast non-negativity-constrained least squares algorithm
    Journal of Chemometrics, Vol. 11, No. 5. (1997), pp. 393-401.
    by Rasmus Bro, Sijmen De Jong
    posted to nmf by dragonrez on 2008-04-23 04:10:26 as **
  • Metagene projection for cross-platform, cross-species characterization of global transcriptional states.
    Proc Natl Acad Sci U S A, Vol. 104, No. 14. (3 April 2007), pp. 5959-5964.
    by P Tamayo, D Scanfeld, BL Ebert, MA Gillette, CW Roberts, JP Mesirov
    posted to nmf by dragonrez on 2008-04-23 02:05:45 as ** along with 6 people nuin oelemento jyuh jfr aviad_work ghattem
  • Least squares formulation of robust non-negative factor analysis
    Chemometrics and Intelligent Laboratory Systems, Vol. 37 (May 1997)
    by P Paatero
    posted to nmf by dragonrez on 2008-04-23 01:56:42 as **
  • Algorithms for Non-negative Matrix Factorization
    (2000), pp. 556-562.
    by Daniel D Lee, Sebastian H Seung
    posted to nmf by dragonrez on 2008-04-23 01:46:12 as ** along with 11 people and 3 groups vlachmore anar yas luispedro pliz walkking aviad_work atbrew sugarexpletive phlow vsree007 T_lab Computer_Graphics csb_journal_club_public
  • Non-negative matrix factorization with sparseness constraints
    (25 Aug 2004)
    by Patrik O Hoyer
    posted to nmf by dragonrez on 2008-04-22 19:24:35 as ** along with 4 people and 1 group luispedro yama_tah walkking aviad_work Computer_Graphics
  • Yeast microarrays for genome wide parallel genetic and gene expression analysis.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 24. (25 November 1997), pp. 13057-13062.
    by DA Lashkari, JL DeRisi, JH McCusker, AF Namath, C Gentile, SY Hwang, PO Brown, RW Davis
    posted to microarray by dragonrez on 2008-04-16 22:42:21 as **
  • Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 467-470.
    by M Schena, D Shalon, RW Davis, PO Brown
    posted to microarray by dragonrez on 2008-04-16 22:40:28 as ** along with 8 people and 1 group frohike shikin Dax42 stsaft fisherp jeremymiller tvdbulck talponer GeschwindLab
  • Role of Integrins in Cancer: Survey of Expression Patterns
    Proc Soc Exp Biol Med, Vol. 222, No. 2. (1 November 1999), pp. 124-138.
    by Gerald J Mizejewski
    posted to cancer integrin by dragonrez on 2008-04-10 20:57:04 as **
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