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dullhunk ontology [59 articles]

Recent papers added to dullhunk library classified by the tag ontology. You can also see everyone's ontology.
  • Modularisation of domain ontologies implemented in description logics and related formalisms including OWL
    (2003), pp. 121-128.
    by Alan L Rector
    posted to ontology modularisation gochebi by dullhunk on 2008-08-11 13:56:17 as ** along with 2 people leechuck Scis0000002
  • Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
    Nat Biotech, Vol. 26, No. 8. (2008), pp. 889-896.
    by Chris F Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R Brinkman, Michael, Eric W Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M Hancock, Nigel W Hardy, Henning Hermjakob, Randall K Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas L Novere, Jim Leebens-Mack, Suzanna E Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth Mcnally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M Reecy, Donald G Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H Scheuermann, Daniel Schober, Barry Smith, Jason Snape, Christian J Stoeckert, Keith Tipton, Peter Sterk, Andreas Untergasser, Jo Vandesompele, Stefan Wiemann
    posted to xml stonerds standards ontology mibbi miape miame fuge by dullhunk on 2008-08-11 10:34:03 as ** along with 6 people and 1 group fgibson ChrisEvelo jandot renatomilani lenov GeeSharpMinor GelML
  • Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by ME Aranguren, E Antezana, M Kuiper, R Stevens
    posted to ontology by dullhunk on 2008-07-17 14:17:14 as ** along with 2 people alanrw jyuh
  • The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by S Avraham, CW Tung, K Ilic, P Jaiswal, EA Kellogg, S McCouch, A Pujar, L Reiser, SY Rhee, MM Sachs, M Schaeffer, L Stein, P Stevens, L Vincent, F Zapata, D Ware
    posted to pankaj-jaiswal ontology by dullhunk on 2008-07-16 13:08:49 as **
  • notes A reference ontology for biomedical informatics: the foundational model of anatomy
    J. of Biomedical Informatics, Vol. 36, No. 6. (December 2003), pp. 478-500.
    by Cornelius Rosse, José LV Mejino
    posted to ontology fma by dullhunk on 2008-07-08 12:00:23 as ** along with 3 people and 1 group leechuck jago yggdrasil Global_health_enterprise_architecture
  • The SWAN biomedical discourse ontology.
    Journal of biomedical informatics (4 May 2008)
    by Paolo Ciccarese, Elizabeth Wu, Gwen Wong, Marco Ocana, June Kinoshita, Alan Ruttenberg, Tim Clark
    posted to swan ontology by dullhunk on 2008-06-30 10:16:28 as **
  • Ontology-centric integration and navigation of the dengue literature.
    Journal of biomedical informatics (5 May 2008)
    by Menaka Rajapakse, Rajaraman Kanagasabai, Wee Tiong T Ang, Anitha Veeramani, Mark J J Schreiber, Christopher J O J Baker
    posted to text-mining ontology by dullhunk on 2008-06-06 15:30:59 as ** along with 1 person tharris
  • Identification of OBO Nonalignments and Its Implications for OBO Enrichment.
    Bioinformatics (Oxford, England), Vol. 24, No. 12. (7 May 2008), pp. 1448-1455.
    by Michael Bada, Lawrence Hunter
    posted to ontology obo mike-bada gochebi by dullhunk on 2008-05-09 14:43:03 as **
  • eVOC: a controlled vocabulary for unifying gene expression data.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1222-1230.
    by J Kelso, J Visagie, G Theiler, A Christoffels, S Bardien, D Smedley, D Otgaar, G Greyling, CV Jongeneel, MI McCarthy, T Hide, W Hide
    posted to ontology semantic-web by dullhunk on 2008-02-20 14:43:41 as ** along with 1 person setar
  • OBO Explorer: an editor for open biomedical ontologies in OWL
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 443-444.
    by Stuart Aitken, Yin Chen, Jonathan Bard
    posted to obo ontology owl by dullhunk on 2008-01-31 13:44:35 as ** along with 3 people tharris jyuh lenov
  • Biomedical ontologies: a functional perspective
    Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 75-90.
    by Daniel L Rubin, Nigam H Shah, Natalya F Noy
    posted to ontology by dullhunk on 2008-01-30 10:48:35 as ** along with 6 people and 1 group sgoetz dansullivanblk jyuh jfr RockHI wchapman dbmi-nlp
  • The TriTryp Phosphatome: analysis of the protein phosphatase catalytic domains
    BMC Genomics, Vol. 8 (26 November 2007), 434.
    by Rachel Brenchley, Humera Tariq, Helen Mcelhinney, Balazs Szoor, Julie Huxley-Jones, Robert Stevens, Keith Matthews, Lydia Tabernero
    posted to from-rds ontology owl semantic-web by dullhunk on 2008-01-08 11:03:58 as ** along with 1 person alanrw
  • The myGrid ontology: bioinformatics service discovery
    International Journal of Bioinformatics Resesearch and Applications, Vol. 3, No. 3. (2007), pp. 303-325.
    by K Wolstencroft, P Alper, D Hull, C Wroe, PW Lord, RD Stevens, CA Goble
    posted to bioinformatics duncan-hull mygrid ontology web-services by dullhunk on 2007-12-02 18:14:04 as read along with 1 person alanrw
  • Ontology of Folksonomy: A Mash-up of Apples and Oranges
    International Journal on Semantic Web & Information Systems, Vol. 3, No. 2. (2007)
    by Tom Gruber
    posted to defrost folksonomy from-kell mashup ontology by dullhunk on 2007-11-21 10:16:04 as ** along with 14 people and 6 groups wartaalman markymaypo wcrosbie scottmoody lanubile hkl itst kowatsch chirayu_kong anansi Hansen1971 aosbat michellutz cherhan ARTFL Wikipedia CoP_CMS semantic-multicast-routing CDG Social Web
  • Knowledge engineering: Principles and methods
    Data & Knowledge Engineering, Vol. 25, No. 1-2. (March 1998), pp. 161-197.
    by Rudi Studer, Richard V Benjamins, Dieter Fensel
    posted to krr ontology by dullhunk on 2007-11-15 14:35:42 as **
  • How Many Legs Do I Have? Non-Simple Roles in Number Restrictions Revisited
    Logic for Programming, Artificial Intelligence, and Reasoning (2007), pp. 303-317.
    by Yevgeny Kazakov, Ulrike Sattler, Evgeny Zolin
    posted to evgeny-zolin ontology owl by dullhunk on 2007-11-14 13:57:54 as **
  • Ontologies are us: A unified model of social networks and semantics
    Web Semantics: Science, Services and Agents on the World Wide Web, Vol. 5, No. 1. (March 2007), pp. 5-15.
    by Peter Mika
    posted to ontology by dullhunk on 2007-11-13 15:37:38 as ** along with 9 people and 2 groups rrbarb tharris pajoma krisl fabianabel azygmunt searchy pprett hudafarhan AGH-IISG musil
  • OBO to OWL: a protege OWL tab to read/save OBO ontologies
    Bioinformatics, Vol. 23, No. 14. (1 July 2007), pp. 1868-1870.
    by Dilvan A Moreira, Mark A Musen
    posted to obo ontology owl by dullhunk on 2007-11-12 15:01:18 as ** along with 5 people tharris jyuh leechuck RockHI lenov
  • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1251-1255.
    by Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, Suzanna Lewis
    posted to ontology obo gochebi by dullhunk on 2007-11-12 14:57:30 as ** along with 14 people and 2 groups jandot fgibson dagmar marck dansullivanblk AlexanderPico tmmurali jfr cjeans leechuck sgoetz PunkRock sobolevnrm lenov baker-group csb_journal_club_public
  • Desiderata for controlled medical vocabularies in the twenty-first century.
    Methods Inf Med, Vol. 37, No. 4-5. (November 1998), pp. 394-403.
    by JJ Cimino
    posted to desiderata ontology by dullhunk on 2007-11-09 10:51:56 as read along with 2 people and 2 groups ibhan kkaiser mgh-lcs IEG
  • Ontology Engineering for Biological Applications
    Semantic Web (2007), pp. 121-137.
    by Larisa Soldatova, Ross King
    posted to ontology by dullhunk on 2007-11-08 11:56:57 as **
  • The Evaluation of Ontologies
    Semantic Web (2007), pp. 139-158.
    by Leo Obrst, Werner Ceusters, Inderjeet Mani, Steve Ray, Barry Smith
    posted to evaluation ontology by dullhunk on 2007-11-08 11:56:19 as **
  • PubFocus: Semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm
    BMC Bioinformatics, Vol. 7 (02 October 2006), 424.
    by Maksim V Plikus, Zina Zhang, Cheng-Ming Chuong
    posted to ontology pubmed by dullhunk on 2007-11-06 17:50:18 as read along with 5 people and 2 groups irenas Enro yas Gaetan adoms dbk-lab T_lab
  • Ontology Performance Profiling and Model Examination: First Steps
    ISWC 2007 (2007), pp. 595-608.
    by Taowei Wang, Bijan Parsia
    posted to ontology optimisation reasoner by dullhunk on 2007-11-06 12:40:31 as **
  • OBO and OWL: Leveraging Semantic Web Technologies for the Life Sciences
    ISWC 2007 (2007), pp. 169-182.
    by Christine Golbreich, Matthew Horridge, Ian Horrocks, Boris Motik, Rob Shearer
    posted to semantic-web owl ontology obo iswc gochebi by dullhunk on 2007-11-06 12:29:24 as **
  • APECKS: using and evaluating a tool for ontology construction with internal and external KA support
    pp. 375-422.
    by J Tennison
    posted to apecks jeni-tennison ontology by dullhunk on 2007-11-06 10:40:36 as **
  • Functional annotation of the Arabidopsis genome using controlled vocabularies.
    Plant Physiol, Vol. 135, No. 2. (June 2004), pp. 745-755.
    by TZ Berardini, S Mundodi, L Reiser, E Huala, M Garcia-Hernandez, P Zhang, LA Mueller, J Yoon, A Doyle, G Lander, N Moseyko, D Yoo, I Xu, B Zoeckler, M Montoya, N Miller, D Weems, SY Rhee
    posted to arabidopsis ontology by dullhunk on 2007-11-06 10:14:39 as **
  • Ontologies for programs, not people
    Genome Biology, Vol. 3, No. 6. (2002)
    by L Hunter
    posted to ontology by dullhunk on 2007-11-05 13:15:08 as **
  • Life sentences: Ontology recapitulates philology
    Genome Biology, Vol. 3, No. 4. (2002)
    by S Brenner
    posted to ontology by dullhunk on 2007-11-05 13:14:49 as read
  • Building Large Knowledge-Based Systems: Representation and Inference in the Cyc Project
    (05 April 1990)
    by Douglas B Lenat, Ramanathan V Guha
    posted to artificial-intelligence cyc ontology by dullhunk on 2007-10-30 12:10:14 as ** along with 1 person brightbyte
  • Methods in biomedical ontology.
    Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 252-266.
    by AC Yu
    posted to umls snomed rdf owl ontology gochebi gene-ontology galen fma by dullhunk on 2007-10-30 11:34:26 as ** along with 2 people and 3 groups beapen leechuck Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics
  • notes Enrichment of OBO ontologies
    Journal of Biomedical Informatics, Vol. 40, No. 3. (June 2007), pp. 300-315.
    by Michael Bada, Lawrence Hunter
    posted to ontology obo mike-bada gochebi gene-ontology chebi by dullhunk on 2007-10-30 11:34:10 as ** along with 1 person leechuck
  • Beyond the data deluge: Data integration and bio-ontologies
    Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 314-320.
    by Judith A Blake, Carol J Bult
    posted to ontology by dullhunk on 2007-10-30 11:34:01 as ** along with 5 people dansullivanblk jyuh thau MrData Simplicity
  • Textpresso: an ontology-based information retrieval and extraction system for biological literature.
    PLoS Biology, Vol. 2, No. 11. (November 2004)
    by HM Müller, EE Kenny, PW Sternberg
    posted to ontology text-mining by dullhunk on 2007-10-30 11:07:29 as ** along with 11 people and 3 groups irenas Enro jyuh yas hpiwowar fisherp zlu daniel_schober diogomartins mroos vlachmore dbk-lab T_lab AID
  • Fast, cheap and out of control: a zero curation model for ontology development.
    Pac Symp Biocomput (2006), pp. 128-139.
    by BM Good, EM Tranfield, PC Tan, M Shehata, GK Singhera, J Gosselink, EB Okon, MD Wilkinson
    posted to icapturer ontology psb by dullhunk on 2007-10-30 11:03:42 as read
  • The Ontology: Chimaera or Pegasus
    (February 2005)
    by Christopher Brewster, Jose Iria, Fabio Ciravegna, Yorick Wilks
    posted to ontology by dullhunk on 2007-10-30 11:01:39 as **
  • Knowledge representation with ontologies: the present and future
    IEEE Intelligent Systems, Vol. 19, No. 1. (2004), pp. 72-81.
    by C Brewster, K O'Hara
    posted to ontology by dullhunk on 2007-10-30 10:58:22 as **
  • What IS-A Is and Isn't: An Analysis of Taxonomic Links in Semantic Networks.
    IEEE Computer, Vol. 16, No. 10. (1983), pp. 30-36.
    by Ronald J Brachman
    posted to isa ontology by dullhunk on 2007-10-29 13:27:08 as **
  • Enzyme Nomenclature 1992
    (27 August 1992)
    by International
    posted to gene-ontology ontology by dullhunk on 2007-10-29 12:38:57 as ** along with 2 people koerner leechuck
  • The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Richard Cote, Philip Jones, Rolf Apweiler, Henning Hermjakob
    posted to ontology web-services by dullhunk on 2007-10-29 12:34:16 as read along with 1 person kluck
  • ChEBI: a database and ontology for chemical entities of biological interest.
    Nucleic Acids Res (11 October 2007)
    by Kirill Degtyarenko, Paula de Matos, Marcus Ennis, Janna Hastings, Martin Zbinden, Alan Mcnaught, Rafael Alcántara, Michael Darsow, Mickaël Guedj, Michael Ashburner
    posted to ontology gochebi chebi by dullhunk on 2007-10-26 17:39:02 as read along with 3 people grottenolm massivemayhem irenas
  • Relations in biomedical ontologies.
    Genome Biology, Vol. 6, No. 5. (2005)
    by B Smith, W Ceusters, B Klagges, J Köhler, A Kumar, J Lomax, C Mungall, F Neuhaus, AL Rector, C Rosse
    posted to relations partof ontology obo isa by dullhunk on 2007-10-26 14:12:20 as ** along with 13 people and 4 groups Mechouche lenov irenas setar gorlitsky yas onca JeremyZucker helliontroy leechuck PunkRock RockHI thau dbk-lab T_lab biomedical-nlp MetabolicModeling
  • COBrA: a bio-ontology editor.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 825-826.
    by S Aitken, R Korf, B Webber, J Bard
    posted to ontology by dullhunk on 2007-10-26 14:09:40 as ** along with 1 person and 1 group irenas dbk-lab
  • Formalizing concepts of species, sex and developmental stage in anatomical ontologies.
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2773-2779.
    by S Aitken
    posted to ontology by dullhunk on 2007-10-26 14:09:17 as **
  • notes The relation between ontologies and XML schemas
    Electronic Transactions on Artificial Intelligence (2001)
    by Michael Klein, Dieter Fensel, Frank van Harmelen, Ian Horrocks
    posted to ontology xml-schema by dullhunk on 2007-10-26 14:05:42 as **
  • Representing default knowledge in biomedical ontologies: Application to the integration of anatomy and phenotype ontologies
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Robert Hoehndorf, Frank Loebe, Janet Kelso, Heinrich Herre
    posted to ontology by dullhunk on 2007-10-25 15:08:02 as ** along with 6 people and 1 group jyuh leechuck PunkRock sobolevnrm gmonce mircea baker-group
  • Towards OntoClean 2.0: A framework for rigidity
    Applied Ontology, Vol. 1, No. 1. (2005), pp. 107-116.
    by Christopher Welty, William Andersen
    posted to ontology by dullhunk on 2007-10-23 12:38:37 as **
  • An ontology research pipeline
    Applied Ontology, Vol. 1, No. 1. (2005), pp. 9-12.
    by Mike Uschold
    posted to ontology by dullhunk on 2007-10-23 12:38:37 as **
  • Applied Ontology Issues
    Applied Ontology, Vol. 1, No. 1. (2005), pp. 9-12.
    by Douglas B Lenat
    posted to ontology by dullhunk on 2007-10-23 12:38:37 as **
  • Applied Ontology: Focusing on content
    Applied Ontology, Vol. 1, No. 1. (2005), pp. 1-5.
    by Nicola Guarino, Mark A Musen
    posted to ontology by dullhunk on 2007-10-23 12:38:37 as **
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