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eckart_bindewald library [354 articles]

Статьи, недавно добавленные в библиотеку eckart_bindewald .
  • Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
    Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2369-2380.
    by T Wang, GD Stormo
    posted to alignment discovery motif ortholog phylogenetic by eckart_bindewald on 2008-03-25 20:43:30 as *** along with 3 people balajis dquest natstreet
  • GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations
    BMC Bioinformatics, Vol. 9, No. Suppl 1. (2008)
    by Qingwei Xu, Yixiang Shi, Qiang Lu, Guoqing Zhang, Qingming Luo, Yixue Li
    posted to gene go ontology prediction rdf semantic by eckart_bindewald on 2008-03-25 19:23:35 as **** along with 1 person jyuh
  • Gene Expression Profiling in Prostate Cancer Cells With Akt Activation Reveals Fra-1 As an Akt-Inducible Gene
    Mol Cancer Res, Vol. 1, No. 6. (1 April 2003), pp. 475-484.
    by Gunjan Tiwari, Hiroshi Sakaue, Jonathan R Pollack, Richard A Roth
    posted to akt cancer expression gene induction microarray profile by eckart_bindewald on 2008-03-24 14:00:07 as ***
  • Combining Statistical Alignment and Phylogenetic Footprinting to Detect Regulatory Elements.
    Bioinformatics (18 March 2008)
    by R Satija, L Pachter, J Hein
    posted to alignment elements regulatory statistical by eckart_bindewald on 2008-03-21 18:29:41 as **** along with 3 people Ema gjuggler maximilianh
  • Strategies for measuring evolutionary conservation of RNA secondary structures
    BMC Bioinformatics, Vol. 9 (26 February 2008), 122.
    by Andreas R Gruber, Stefan H Bernhart, Ivo L Hofacker, Stefan Washietl
    posted to conservation evolution rna secondary structure by eckart_bindewald on 2008-03-21 16:54:03 as *** along with 3 people and 1 group ilh stajich gresillaud Berkeley Mycology
  • Biological sequence classification utilizing positive and unlabeled data.
    Bioinformatics (14 March 2008)
    by Yuanyuan Xiao, Mark R R Segal
    posted to classification machine_learning sequence by eckart_bindewald on 2008-03-19 15:44:36 as *** along with 3 people jyuh djkt mdstobbe
  • Evolution of microRNAs and their targets: Are all microRNAs biologically relevant?
    Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. In Press, Uncorrected Proof
    by Michael J Axtell
    posted to evolution function microrna target by eckart_bindewald on 2008-03-19 15:38:26 as *** along with 2 people and 1 group maralena stajich Berkeley Mycology
  • GW182 interaction with Argonaute is essential for miRNA-mediated translational repression and mRNA decay.
    Nat Struct Mol Biol (16 March 2008)
    by Ana Eulalio, Eric Huntzinger, Elisa Izaurralde
    posted to argonaute decay eif4e microrna repression translation by eckart_bindewald on 2008-03-19 15:37:27 as **
  • Enhanced automated function prediction using distantly related sequences and contextual association by PFP
    Protein Sci, Vol. 15, No. 6. (1 June 2006), pp. 1550-1556.
    by Troy Hawkins, Stanislav Luban, Daisuke Kihara
    posted to automated function prediction protein by eckart_bindewald on 2008-03-18 17:31:40 as ** along with 1 person sgoetz
  • Function prediction of uncharacterized proteins.
    J Bioinform Comput Biol, Vol. 5, No. 1. (February 2007), pp. 1-30.
    by T Hawkins, D Kihara
    posted to function prediction protein by eckart_bindewald on 2008-03-18 17:29:55 as ***
  • Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e237.
    by Juan A Ranea, Corin Yeats, Alastair Grant, Christine A Orengo
    posted to 3d function phylogenetic prediction protein by eckart_bindewald on 2008-03-18 17:26:00 as ***** along with 4 people skhadar zwang asddd hpaces
  • GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes.
    BMC Bioinformatics, Vol. 5 (18 November 2004)
    by DM Martin, M Berriman, GJ Barton
    posted to function go prediction protein by eckart_bindewald on 2008-03-18 17:21:27 as **** along with 3 people Sharpshoot sgoetz bootsy
  • Multiple testing on the directed acyclic graph of gene ontology
    Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 537-544.
    by Jelle J Goeman, Ulrich Mansmann
    posted to gene microarray ontology by eckart_bindewald on 2008-03-14 16:53:20 as ** along with 5 people jyuh jfr djkt barriot seemu
  • Global self-organization of all known protein sequences reveals inherent biological signatures
    Journal of Molecular Biology, Vol. 268, No. 2. (2 May 1997), pp. 539-556.
    by Michal Linial, Nathan Linial, Naftali Tishby, Golan Yona
    posted to fingerprint function gene prediction protein signature by eckart_bindewald on 2008-03-14 16:41:33 as ****
  • Predicting expression patterns from regulatory sequence in Drosophila segmentation
    Nature (02 January 2008)
    by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul
    posted to expression gene microrna prediction profile promoter by eckart_bindewald on 2008-03-13 15:34:23 as ***** along with 10 people tmmurali djkt bootsy biomcgary idonaldson roys emptyhb pkharchenko meiklej jrest
  • Computational Modeling of Post-Transcriptional Gene Regulation by MicroRNAs.
    J Comput Biol (11 March 2008)
    by Raya Khanin, Veronica Vinciotti
    posted to kinetics microrna by eckart_bindewald on 2008-03-13 14:58:10 as ** along with 3 people bootsy jfr maralena
  • Detection of a MicroRNA Signal in an In Vivo Expression Set of mRNAs.
    PLoS ONE, Vol. 2, No. 8. (2007)
    by T Liu, T Papagiannakopoulos, K Puskar, S Qi, F Santiago, W Clay, K Lao, Y Lee, SF Nelson, HI Kornblum, F Doyle, L Petzold, B Shraiman, KS Kosik
    posted to correlation microrna mrna by eckart_bindewald on 2008-03-06 15:33:35 as **** along with 1 person and 1 group andersbj microRNA
  • Members of the miRNA-200 family regulate olfactory neurogenesis.
    Neuron, Vol. 57, No. 1. (10 January 2008), pp. 41-55.
    by PS Choi, L Zakhary, WY Choi, S Caron, E Alvarez-Saavedra, EA Miska, M McManus, B Harfe, AJ Giraldez, RH Horvitz, AF Schier, C Dulac
    posted to expression microrna neural olfactory tissue by eckart_bindewald on 2008-03-06 13:11:11 as **** along with 1 person maralena
  • Morphogenesis in skin is governed by discrete sets of differentially expressed microRNAs
    Nature Genetics, Vol. 38, No. 3. (05 February 2006), pp. 356-362.
    by Rui Yi, Dónal O'Carroll, Hilda A Pasolli, Zhihong Zhang, Fred S Dietrich, Alexander Tarakhovsky, Elaine Fuchs
    posted to expression microrna profile skin by eckart_bindewald on 2008-03-06 13:08:54 as *** along with 3 people pcahan1 tardigrade panetebrother
  • A skin microRNA promotes differentiation by repressing ‘stemness’
    Nature (02 March 2008)
    by Rui Yi, Matthew N Poy, Markus Stoffel, Elaine Fuchs
    posted to expression function microrna protein skin by eckart_bindewald on 2008-03-06 13:07:58 as ***** along with 5 people and 1 group heliopais hplatero Alexander_Kanitz maralena snowcrash microRNA
  • Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer
    BMC Bioinformatics, Vol. 8, No. Suppl 7. (2007)
    by Yuriy Gusev, Thomas Schmittgen, Megan Lerner, Russell Postier, Daniel Brackett
    posted to analysis cancer function microrna pathway prediction protein by eckart_bindewald on 2008-03-03 16:07:17 as *** along with 5 people jfr ealloza vinithepooh yugusev maralena
  • Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster
    BMC Bioinformatics, Vol. 9 (28 February 2008), 129.
    by Wensheng Zhang, Sige Zou, Jiuzhou Song
    posted to function microarray prediction protein by eckart_bindewald on 2008-03-03 15:19:20 as ****
  • MicroRNA-21 targets tumor suppressor genes in invasion and metastasis.
    Cell Res (12 February 2008)
    by Shuomin Zhu, Hailong Wu, Fangting Wu, Daotai Nie, Shijie Sheng, Yin-Yuan Y Mo
    posted to cancer microrna by eckart_bindewald on 2008-02-15 13:06:01 as *** along with 1 person maralena
  • The Roles of MicroRNAs in Vertebrate Physiology and Human Disease.
    Annu Rev Genomics Hum Genet (14 August 2006)
    by Tsung-Cheng C Chang, Joshua T T Mendell
    posted to cancer microrna review by eckart_bindewald on 2007-12-11 20:53:23 as read along with 1 person and 1 group jyuh Bioinformatics
  • GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by Y Zhang, SM Luoh, LS Hon, R Baertsch, WI Wood, Z Zhang
    posted to cancer database expression gene microarray by eckart_bindewald on 2007-12-10 13:50:18 as read
  • How RNA folds.
    J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 271-281.
    by I Tinoco, C Bustamante
    posted to folding prediction rna by eckart_bindewald on 2007-12-06 14:40:49 as *** along with 8 people and 3 groups dayjm marcius perrywoo arcticrasta condon Hosna apop physics beta BioinfoCIPF SGU-CIPF
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to fragment prediction rna structure by eckart_bindewald on 2007-12-06 14:36:50 as read along with 5 people and 2 groups jwm marcius zwang physics Ema BioinfoCIPF SGU-CIPF
  • Candidates for Novel RNA Topologies
    Journal of Molecular Biology, Vol. 341, No. 5. (27 August 2004), pp. 1129-1144.
    by Namhee Kim, Nahum Shiffeldrim, Hin H Gan, Tamar Schlick
    posted to graph matrix rna topology by eckart_bindewald on 2007-12-06 13:29:54 as read along with 2 people and 3 groups marcius condon beta BioinfoCIPF SGU-CIPF
  • High-resolution structure prediction and the crystallographic phase problem
    Nature (14 October 2007)
    by Bin Qian, Srivatsan Raman, Rhiju Das, Philip Bradley, Airlie J Mccoy, Randy J Read, David Baker
    posted to ab_initio crystallography nmr prediction protein star3 structure x-ray by eckart_bindewald on 2007-11-19 12:47:07 as ***** along with 15 people and 2 groups ardalby apaydin aheilbut jwm chad_davis ffranca dgront massivemayhem cjeans zwang cactus sobolevnrm boris_aguilar Ema chenway OPIG baker-group
  • Ten simple rules for getting published.
    PLoS Comput Biol, Vol. 1, No. 5. (October 2005)
    by PE Bourne
    posted to management rules self-help by eckart_bindewald on 2007-11-09 21:17:23 as ** along with 16 people and 7 groups marcius eweaver leonardo dullhunk cmm ewmoore nickluscombe paulclinger ucbcjbm rgb linhailue OriginalLurch rodney Torsten_Holmer elvinado mattions FAB-lab EBI-regulation SigsitLab BioinfoCIPF SGU-CIPF pileWorks Kopelman_Group
  • Ten Simple Rules for Doing Your Best Research, According to Hamming
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e213.
    by Thomas C Erren, Paul Cullen, Michael Erren, Philip E Bourne
    posted to management rules self-help by eckart_bindewald on 2007-11-09 21:16:48 as read along with 6 people leonardo dullhunk zwang suizan cabbagezs closure
  • Detecting genetic variation in microarray expression data
    Genome Res. (3 July 2007), gr.6307307.
    by Jennifer A Greenhall, Matthew A Zapala, Mario Caceres, Ondrej Libiger, Carrolee Barlow, Nicholas J Schork, David J Lockhart
    posted to detection expression microarray pattern prediction by eckart_bindewald on 2007-11-06 18:09:08 as **** along with 6 people and 2 groups jyuh jfr rdiaz giovanni qmwwallace msomel Bioinformatics GeschwindLab
  • Deoxyribozymes that recode sequence information.
    Nucleic Acids Res, Vol. 34, No. 8. (2006), pp. 2166-2172.
    by JJ Tabor, M Levy, AD Ellington
    posted to design dna rna by eckart_bindewald on 2007-11-06 16:24:08 as *** along with 1 person JKelly555
  • Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA
    RNA, Vol. 9, No. 4. (1 April 2003), pp. 377-383.
    by Scott K Silverman
    posted to riboswitch ribozyme rna sensor switch by eckart_bindewald on 2007-11-06 16:23:06 as ***
  • A general approach for the use of oligonucleotide effectors to regulate the catalysis of RNA-cleaving ribozymes and DNAzymes
    Nucl. Acids Res., Vol. 30, No. 8. (15 April 2002), pp. 1735-1742.
    by Dennis Y Wang, Beatrice H Lai, Anat R Feldman, Dipankar Sen
    posted to aptamer catalysis dna dnazyme effector oligonucleotide ribozyme rna by eckart_bindewald on 2007-11-06 16:20:55 as ***
  • A Glycine-Dependent Riboswitch That Uses Cooperative Binding to Control Gene Expression
    Science, Vol. 306, No. 5694. (8 October 2004), pp. 275-279.
    by Maumita Mandal, Mark Lee, Jeffrey E Barrick, Zasha Weinberg, Gail M Emilsson, Walter L Ruzzo, Ronald R Breaker
    posted to cooperative design expression gene riboswitch rna by eckart_bindewald on 2007-11-06 16:19:04 as ****
  • Cooperative binding of effectors by an allosteric ribozyme
    Nucl. Acids Res., Vol. 29, No. 7. (1 April 2001), pp. 1631-1637.
    by Antony M Jose, Garrett A Soukup, Ronald R Breaker
    posted to aptamer cooperative design effector ribozyme rna by eckart_bindewald on 2007-11-06 15:51:26 as ****
  • Inter- and intra-combinatorial regulation by transcription factors and microRNAs
    BMC Genomics, Vol. 8 (30 October 2007), 396.
    by Yiming Zhou, John Ferguson, Joseph T Chang, Yuval Kluger
    posted to interactions microrna network regulation transcription by eckart_bindewald on 2007-11-04 12:19:53 as **** along with 1 person maralena
  • A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC)
    Nucl. Acids Res., Vol. 27, No. 4. (15 February 1999), pp. 949-955.
    by Y Tanaka, S Fujii, H Hiroaki, T Sakata, T Tanaka, S Uesugi, K Tomita, Y Kyogoku
    posted to a-form groove helix rna by eckart_bindewald on 2007-11-01 18:48:54 as ***
  • MicroRNA-21 (miR-21) post-transcriptionally downregulates tumor suppressor Pdcd4 and stimulates invasion, intravasation and metastasis in colorectal cancer
    Oncogene, Vol. aop, No. current.
    by IA Asangani, SAK Rasheed, DA Nikolova, JH Leupold, NH Colburn, S Post, H Allgayer
    posted to cancer microrna pdcd4 tumor by eckart_bindewald on 2007-11-01 04:11:28 as *** along with 2 people maralena sandrapineau
  • Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA.
    Genome Res (6 December 2006)
    by Eva K K Freyhult, Jonathan P P Bollback, Paul P P Gardner
    posted to homology noncoding rna search secondary_structure by eckart_bindewald on 2007-10-29 04:02:12 as read along with 8 people and 2 groups jfr ppgardne gpalidwor dchughes aswin bjhaugen jayster4 yoanjacquemin G4ID Genetics-of-Gambling
  • Topological constraints in nucleic acid hybridization kinetics
    Nucleic Acids Research, Vol. 33, No. 13. (2005), pp. 4090-4095.
    by Justin S Bois, Suvir Venkataraman, Harry M Choi, Andrew J Spakowitz, Zhen-Gang Wang, Niles A Pierce
    posted to frustration kinetics kissing-loop rna topology by eckart_bindewald on 2007-10-29 03:05:18 as read along with 1 person Kiarostami
  • Parallel Evolution of the Genetic Code in Arthropod Mitochondrial Genomes
    PLoS Biology, Vol. 4, No. 5. (1 May 2006), e127.
    by Federico Abascal, David Posada, Robin D Knight, Rafael Zardoya
    posted to coding evolution genetic trna by eckart_bindewald on 2007-10-26 13:32:13 as ***
  • Fast-Find: a novel computational approach to analyzing combinatorial motifs.
    BMC Bioinformatics, Vol. 7 (2006)
    by M Hamady, E Peden, R Knight, R Singh
    posted to database motif prediction rna search by eckart_bindewald on 2007-10-26 13:30:28 as ***
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to evolution mutation prediction ribosome rna structure by eckart_bindewald on 2007-10-26 13:26:48 as *** along with 5 people and 3 groups marcius balicea penka i000 cjeans BioinfoCIPF SGU-CIPF YY1
  • An overview of structural DNA nanotechnology.
    Mol Biotechnol, Vol. 37, No. 3. (November 2007), pp. 246-257.
    by NC Seeman
    posted to dna nanodesign nanotechnology by eckart_bindewald on 2007-10-24 20:44:44 as ****
  • Identification of homologs in insignificant BLAST hits by exploiting extrinsic gene properties
    BMC Bioinformatics, Vol. 8 (21 September 2007), 356.
    by Jos Boekhorst, Berend Snel
    posted to accuracy blast gene homology prediction sequence by eckart_bindewald on 2007-10-24 14:12:45 as *** along with 2 people julesyoo dandaman
  • Photonic boolean logic gates based on DNA aptamers
    Chemical Communications (2007), pp. 195-197.
    by W Yoshida, Y Yokobayashi
    posted to no-tag by eckart_bindewald on 2007-10-24 13:33:38 as ****
  • Modeling RNA tertiary structure motifs by graph-grammars.
    Nucleic Acids Res, Vol. 35, No. 5. (2007), pp. 1726-1736.
    by K St-Onge, P Thibault, S Hamel, F Major
    posted to graph motif rna structure by eckart_bindewald on 2007-10-23 14:25:06 as *** along with 1 person debatebob
  • Highly Connected Two-Dimensional Crystals of DNA Six-Point-Stars
    J. Am. Chem. Soc., Vol. 128, No. 50. (20 December 2006), pp. 15978-15979.
    by Y He, Y Tian, AE Ribbe, C Mao
    posted to dna lattice nanodesign nanotechmology by eckart_bindewald on 2007-10-23 14:18:01 as ****
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