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eldan genetic_regulatory_networks [41 articles]

Recent papers added to eldan library classified by the tag genetic_regulatory_networks. You can also see everyone's genetic_regulatory_networks.
  • Alternative routes and mutational robustness in complex regulatory networks
    Biosystems, Vol. 88, No. 1-2. (March 2007), pp. 163-172.
    by Andreas Wagner, Jeremiah Wright
    posted to genetic_regulatory_networks yeast by eldan on 2007-03-28 04:01:50 as ***** along with 1 person wnpx
  • Evolving fuzzy rules to model gene expression.
    Biosystems (30 April 2006)
    by Ricardo Linden, Amit Bhaya
  • Potential Energy Landscape and Robustness of A Gene Regulatory Network: Toggle Switch
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e60.eor.
    by Keun-Young Kim, Jin Wang
    posted to genetic_regulatory_networks robustness by eldan on 2007-02-17 20:16:32 as *****
  • Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology
    PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e15.
    by Stefano Ciliberti, Olivier C Martin, Andreas Wagner
  • Dynamic simulations on the Arachidonic Acid Metabolic Network
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e55.eor.
    by Kun Yang, Wenzhe Ma, Huanhuan Liang, Qi Ouyang, Chao Tang, Luhua Lai
    posted to biology genetic_regulatory_networks medicine by eldan on 2007-02-17 03:31:25 as *****
  • Intervention in a family of Boolean networks.
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 226-232.
  • Intervention in context-sensitive probabilistic Boolean networks.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1211-1218.
    by R Pal, A Datta, ML Bittner, ER Dougherty
  • An empirical Bayes approach to inferring large-scale gene association networks.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 754-764.
  • The Origins of Order: Self-Organization and Selection in Evolution
    (01 May 1993)
    by Stuart A Kauffman
  • Gene regulatory networks and the evolution of animal body plans.
    Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800.
    by EH Davidson, DH Erwin
  • A Nonlinear Continuous Stochastic Model for Genetic Regulatory Networks. Caveats for Microarray Data Analysis
    (1 August 2006), pp. 28-34.
    by Simon Rosenfeld
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to microarray genetic_regulatory_networks by eldan on 2007-01-31 03:22:28 as read
  • notes SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451.
    by Stefan Bornholdt
  • Evolution of repressilators using a biologically-motivated model of gene expression
    (1 August 2006), pp. 22-27.
    by Barry Drennan, Randall D Beer
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to modelling genetic_regulatory_networks evolution development by eldan on 2007-01-30 00:28:42 as read
  • Design of genetic networks with specified functions by evolution in silico.
    Proc Natl Acad Sci U S A, Vol. 101, No. 2. (13 January 2004), pp. 580-585.
  • notes Evolving complex dynamics in electronic models of genetic networks.
    Chaos, Vol. 14, No. 3. (September 2004), pp. 707-715.
    by J Mason, PS Linsay, JJ Collins, L Glass
  • notes Evolving Noisy Oscillatory Dynamics in Genetic Regulatory Networks
    (April 2006), pp. 290-299.
    by Andre Leier, Dwight P Kuo, Wolfgang Banzhaf, Kevin Burrage
    edited by P Collet, M Tomassini, M Ebner, S Gustafson, A Ekárt
    posted to genetic_regulatory_networks by eldan on 2007-01-27 00:37:16 as read
  • Adaptive Fractal Gene Regulatory Networks for Robot Control
    (2004)
    by Peter J Bentley
    edited by J Miller
    posted to genetic_regulatory_networks by eldan on 2007-01-27 00:30:21 as *** along with 696 people and 131 groups fernand0 dperkel egh jyuh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger incites bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela 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BuckeyePhysicist bretblosser charlesijones term duckysherwood madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl malkav30 p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho danzinde ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive 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  • Evolving Biological Clocks using Genetic Regulatory Networks
    (1 August 2006), pp. 15-21.
    by Johannes F Knabe, Chrystpoher L Nehaniv, Maria J Schilstra, Tom Quick
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
  • notes Qualitative simulation of genetic regulatory networks using piecewise-linear models
    Bulletin of Mathematical Biology, Vol. V66, No. 2. (17 March 2004), pp. 301-340.
    by Hidde de Jong, Jean-Luc Gouzé, Cã©line Hernandez, Michel Page, Tewfik Sari, Johannes Geiselmann
    posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-25 02:51:05 as *****
  • Boolean formalization of genetic control circuits
    Journal of Theoretical Biology, Vol. 42, No. 3. (December 1973), pp. 563-585.
    by Rene Thomas
    posted to modelling genetic_regulatory_networks boolean_networks by eldan on 2007-01-25 02:45:09 as *****
  • A natural class of robust networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 15. (22 July 2003), pp. 8710-8714.
    by M Aldana, P Cluzel
  • Transcriptional Regulatory Networks in Saccharomyces cerevisiae
    Science, Vol. 298, No. 5594. (October 2002), pp. 799-804.
    by Tong I Lee, Nicola J Rinaldi, François Robert, Duncan T Odom, Ziv Bar-Joseph, Georg K Gerber, Nancy M Hannett, Christopher T Harbison, Craig M Thompson, Itamar Simon, Julia Zeitlinger, Ezra G Jennings, Heather L Murray, Benjamin D Gordon, Bing Ren, John J Wyrick, Jean-Bosco Tagne, Thomas L Volkert, Ernest Fraenkel, David K Gifford, Richard A Young
    posted to yeast genetic_regulatory_networks by eldan on 2007-01-25 02:39:02 as **** along with 1 person wnpx
  • Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Network
    Physical Review Letters, Vol. 94, No. 12. (2005)
    by Sui Huang, Gabriel Eichler, Yaneer B Yam, Donald E Ingber
  • notes Metabolic stability and epigenesis in randomly constructed genetic nets
    Journal of Theoretical Biology, Vol. 22, No. 3. (March 1969), pp. 437-467.
    by SA Kauffman
  • A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles.
    Plant Cell, Vol. 16, No. 11. (November 2004), pp. 2923-2939.
  • Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles.
    Pac Symp Biocomput (2006), pp. 559-571.
    posted to genetic_regulatory_networks by eldan on 2007-01-23 00:28:47 as **** along with 2 people tardigrade wnpx
  • Inferring genetic regulatory logic from expression data
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2706-2713.
    by Svetlana Bulashevska, Roland Eils
    posted to genetic_regulatory_networks by eldan on 2007-01-19 04:06:06 as ***** along with 1 person wnpx
  • notes Modeling and simulation of genetic regulatory systems: a literature review.
    J Comput Biol, Vol. 9, No. 1. (2002), pp. 67-103.
    by H de Jong
  • Inference of genetic regulatory networks under the best-fit extension paradigm
    (2002)
    by I Shmulevich, A Saarinen, Yli O Harja, J Astola
  • Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.
    Bioinformatics, Vol. 18, No. 2. (February 2002), pp. 261-274.
    by I Shmulevich, ER Dougherty, S Kim, W Zhang
  • notes A model of transcriptional regulatory networks based on biases in the observed regulation rules
    Complexity, Vol. 7, No. 4. (14 August 2002), pp. 23-40.
    by Stephen E Harris, Bruce K Sawhill, Andrew Wuensche, Stuart Kauffman
  • The role of certain Post classes in Boolean network models of genetic networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 19. (16 September 2003), pp. 10734-10739.
  • The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster
    Journal of Theoretical Biology, Vol. 223 (7 July 2003), pp. 1-18.
    by Réka Albert, Hans G Othmer
  • Evolution, Interactions, and Biological Networks
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11.
    by Joshua S Weitz, Philip N Benfey, Ned S Wingreen
  • Eukaryotic cells are dynamically ordered or critical but not chaotic
    PNAS, Vol. 102, No. 38. (20 September 2005), pp. 13439-13444.
    by Ilya Shmulevich, Stuart A Kauffman, Maximino Aldana
    posted to genetic_regulatory_networks boolean_networks by eldan on 2007-01-17 23:31:04 as read
  • The Role of Redundancy in the Robustness of Random Boolean Networks
    (11 Jan 2006)
    by Carlos Gershenson, Stuart A Kauffman, Ilya Shmulevich
  • Robustness and fragility of Boolean models for genetic regulatory networks
    Journal of Theoretical Biology, Vol. 235 (27 Jan 2005), pp. 431-449.
    by Madalena Chaves, Réka Albert, Eduardo D Sontag
    posted to genetic_regulatory_networks boolean_networks by eldan on 2007-01-17 23:29:51 as read
  • Topology and Robustness in the Drosophila Segment Polarity Network
    PLoS Biology, Vol. 2, No. 6. (1 June 2004), e123.
    by Nicholas T Ingolia
    posted to genetic_regulatory_networks drosophila boolean_networks by eldan on 2007-01-17 23:29:07 as ****
  • The yeast cell-cycle network is robustly designed
    PNAS, Vol. 101, No. 14. (6 April 2004), pp. 4781-4786.
    by Fangting Li, Tao Long, Ying Lu, Qi Ouyang, Chao Tang
  • Sensorimotor Information flow in Genetic Regulatory Network driven control systems
    (1 August 2006), pp. 351-357.
    by Tom Quick, Chrystopher Nehaniv, Kerstin Dautenhahn, Graham Roberts
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
  • How the Leopard Changed Its Spots : The Evolution of Complexity
    (01 March 2001)
    by Brian Goodwin
    posted to genetics genetic_regulatory_networks evolution development biology by eldan on 2006-05-27 04:50:08 as read
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