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emptyhb motif_searching [11 articles]

Recent papers added to emptyhb library classified by the tag motif_searching. You can also see everyone's motif_searching.
  • Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59.
    by Outi Hallikas, Kimmo Palin, Natalia Sinjushina, Reetta Rautiainen, Juha Partanen, Esko Ukkonen, Jussi Taipale
    posted to motif_searching experimental_method dna-protein_interaction by emptyhb on 2008-07-26 16:58:02 as ** along with 13 people and 5 groups Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais oelemento Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
  • Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714.
    by ET Dermitzakis, CM Bergman, AG Clark
    posted to cis_regulatory_evolution drosophila motif_searching by emptyhb on 2008-03-25 23:01:47 as ** along with 2 people and 1 group brant cisevol cis-regulatory-evolution
  • Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e7.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to cis_regulatory_elements drosophila motif_searching by emptyhb on 2008-03-24 21:22:51 as ** along with 6 people and 1 group isimpson indigoviolet dpollard dquest SeungjoonOh nklee EisenLab
  • Precise physical models of protein-DNA interaction from high-throughput data
    PNAS, Vol. 104, No. 2. (9 January 2007), pp. 501-506.
    by Justin B Kinney, Gasper Tkacik, Curtis G Callan
    posted to cis_regulatory_elements dna-protein_interaction motif_searching statistical_method by emptyhb on 2008-03-20 15:56:33 as ** along with 2 people aalibes zwang
  • Methods for calculating the probabilities of finding patterns in sequences.
    Comput Appl Biosci, Vol. 5, No. 2. (April 1989), pp. 89-96.
    by R Staden
    posted to cis_regulatory_elements motif_searching by emptyhb on 2008-03-18 18:10:27 as ** along with 1 person sconlan
  • Close sequence comparisons are sufficient to identify human cis-regulatory elements.
    Genome Res (12 June 2006)
    by Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M M Rubin, Olivier Couronne, Len A A Pennacchio
    posted to cis_regulatory_elements cis_regulatory_evolution motif_searching by emptyhb on 2008-02-27 06:32:09 as *** along with 7 people and 2 groups bpcusack mariakmejia indigoviolet dpollard samal nickluscombe olympos EisenLab EBI-regulation
  • notes Conservation of regulatory elements between two species of Drosophila.
    BMC Bioinformatics, Vol. 4 (20 November 2003)
    by E Emberly, N Rajewsky, ED Siggia
    posted to cis_regulatory_elements cis_regulatory_evolution drosophila motif_searching by emptyhb on 2008-02-24 21:43:41 as *** along with 1 person and 1 group dquest Bioinformatics
  • Extensive low-affinity transcriptional interactions in the yeast genome.
    Genome Res (29 June 2006)
    by Amos Tanay
    posted to cis_regulatory_elements motif_searching statistical_method by emptyhb on 2008-01-21 23:32:43 as ** along with 6 people and 1 group devin indigoviolet dpollard balicea koller lusk EisenLab
  • Transcriptional Control in the Segmentation Gene Network of Drosophila
    PLoS Biology, Vol. 2, No. 9. (1 September 2004), e271.
    by Mark D Schroeder, Michael Pearce, John Fak, Hongqing Fan, Ulrich Unnerstall, Eldon Emberly, Nikolaus Rajewsky, Eric D Siggia, Ulrike Gaul
    posted to cis_regulatory_elements drosophila motif_searching pattern_formation transcriptional_regulation by emptyhb on 2008-01-19 22:49:02 as **** along with 7 people and 3 groups balicea pradiptaray indigoviolet dpollard adepace wrowell dlmace EisenLab Cline_lab UH - Computational Biology
  • Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 757-762.
    by BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, GM Rubin, MB Eisen
    posted to cis_regulatory_elements motif_searching by emptyhb on 2008-01-18 06:26:13 as ** along with 3 people and 1 group indigoviolet Stew csdhwang EisenLab
  • MATCH: A tool for searching transcription factor binding sites in DNA sequences.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3576-3579.
    by AE Kel, E Gössling, I Reuter, E Cheremushkin, OV Kel-Margoulis, E Wingender
    posted to cis_regulatory_elements motif_searching by emptyhb on 2008-01-08 16:42:54 as ** along with 6 people setar aprasad reidy nklee danish_punter maximilianh
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