Global identification of Myc target genes reveals its direct role in mitochondrial biogenesis and its E-box usage in vivo.

@article{citeulike:2730174, abstract = {The Myc oncoprotein is a transcription factor involved in a variety of human cancers. Overexpression of Myc is associated with malignant transformation. In normal cells, Myc is induced by mitotic signals, and in turn, it regulates the expression of downstream target genes. Although diverse roles of Myc have been predicted from many previous studies, detailed functions of Myc targets are still unclear. By combining chromatin immunoprecipitation (ChIP) and promoter microarrays, we identified a total of 1469 Myc direct target genes, the majority of which are novel, in HeLa cells and human primary fibroblasts. We observed dramatic changes of Myc occupancy at its target promoters in foreskin fibroblasts in response to serum stimulation. Among the targets of Myc, 107 were nuclear encoded genes involved in mitochondrial biogenesis. Genes with important roles in mitochondrial replication and biogenesis, such as POLG, POLG2, and NRF1 were identified as direct targets of Myc, confirming a direct role for Myc in regulating mitochondrial biogenesis. Analysis of target promoter sequences revealed a strong preference for Myc occupancy at promoters containing one of several described consensus sequences, CACGTG, in vivo. This study thus sheds light on the transcriptional regulatory networks mediated by Myc in vivo.}, address = {Section of Molecular Genetics and Microbiology, Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas, United States of America.}, author = {Kim, J. and Lee, J. H. and Iyer, V. R. }, citeulike-article-id = {2730174}, doi = {10.1371/journal.pone.0001798}, issn = {1932-6203}, journal = {PLoS ONE}, keywords = {analysis, chip, ebox, myc, promoter}, number = {3}, posted-at = {2008-04-28 15:41:57}, priority = {2}, title = {Global identification of Myc target genes reveals its direct role in mitochondrial biogenesis and its E-box usage in vivo.}, url = {http://dx.doi.org/10.1371/journal.pone.0001798}, volume = {3}, year = {2008} }

TY - JOUR ID - citeulike:2730174 L3 - citeulike-article-id:2730174 TI - Global identification of Myc target genes reveals its direct role in mitochondrial biogenesis and its E-box usage in vivo. JF - PLoS ONE VL - 3 IS - 3 AD - Section of Molecular Genetics and Microbiology, Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas, United States of America. SN - 1932-6203 N2 - The Myc oncoprotein is a transcription factor involved in a variety of human cancers. Overexpression of Myc is associated with malignant transformation. In normal cells, Myc is induced by mitotic signals, and in turn, it regulates the expression of downstream target genes. Although diverse roles of Myc have been predicted from many previous studies, detailed functions of Myc targets are still unclear. By combining chromatin immunoprecipitation (ChIP) and promoter microarrays, we identified a total of 1469 Myc direct target genes, the majority of which are novel, in HeLa cells and human primary fibroblasts. We observed dramatic changes of Myc occupancy at its target promoters in foreskin fibroblasts in response to serum stimulation. Among the targets of Myc, 107 were nuclear encoded genes involved in mitochondrial biogenesis. Genes with important roles in mitochondrial replication and biogenesis, such as POLG, POLG2, and NRF1 were identified as direct targets of Myc, confirming a direct role for Myc in regulating mitochondrial biogenesis. Analysis of target promoter sequences revealed a strong preference for Myc occupancy at promoters containing one of several described consensus sequences, CACGTG, in vivo. This study thus sheds light on the transcriptional regulatory networks mediated by Myc in vivo. KW - analysis KW - chip KW - ebox KW - myc KW - promoter AU - Kim, J AU - Lee, JH AU - Iyer, VR PY - 2008/// UR - http://dx.doi.org/10.1371/journal.pone.0001798 ER -