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hdopazo library [227 articles]

Статьи, недавно добавленные в библиотеку hdopazo .
  • Patterns and rates of intron divergence between humans and chimpanzees
    Genome Biology, Vol. 8 (19 February 2007), R21.
    by Elodie Gazave, Tomas Marques-Bonet, Olga Fernando, Brian Charlesworth, Arcadi Navarro
    posted to length intron human chimpanzee by hdopazo on 2008-06-11 10:55:19 as ** along with 3 people and 2 groups nickluscombe lilou cisevol EBI-regulation cis-regulatory-evolution
  • Models of molecular evolution and phylogeny.
    Genome research, Vol. 8, No. 12. (December 1998), pp. 1233-1244.
    by P Liò, N Goldman
    posted to no-tag by hdopazo on 2008-06-05 11:37:58 as **
  • LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 721-731.
    by M Brudno, CB Do, GM Cooper, MF Kim, E Davydov, ED Green, A Sidow, S Batzoglou,
    posted to alignment compgenomics by hdopazo on 2008-02-06 16:01:33 as ** along with 12 people and 1 group Neeperando operon balajis dpollard xwbcn dquest adepace lusk Garamonfok adijr natstreet nklee EisenLab
  • PAML 4: Phylogenetic Analysis by Maximum Likelihood
    Mol Biol Evol (4 May 2007), msm088.
    by Ziheng Yang
    posted to adaptation compgenomics positive selection by hdopazo on 2008-02-05 15:32:30 as ** along with 7 people and 1 group CharlesM RamuAnandakrishnan operon akifumi BioNica stajich ryanraaum Berkeley Mycology
  • Predicting the Effects of Amino Acid Substitutions on Protein Function.
    Annu Rev Genomics Hum Genet (9 August 2005)
    by Pauline C C Ng, Steven Henikoff
    posted to disease snp w by hdopazo on 2008-02-05 10:16:21 as ** along with 6 people and 2 groups Einat caporaso ramensky massivemayhem cat_worth lpfernandes structural_bioinformatics biomedical-nlp
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
    posted to evolution human positive selection by hdopazo on 2008-02-04 17:33:37 as ** along with 9 people and 3 groups hpaces shoshin candypmcg balicea laharrin cannon qwermish wsjames coyotetraxx BioinfoCIPF Oxford Virology Fasting, food and evolution
  • Statistical methods for detecting molecular adaptation.
    TRENDS IN ECOLOGY AND EVOLUTION, Vol. 15, No. 12. (1 December 2000), pp. 496-503.
    by Z Yang, JP Bielawski
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:51:39 as ** along with 2 people and 3 groups clearbluespring stevanspringer Bioinformatics FAB-lab BioinfoCIPF
  • Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions.
    Genetics, Vol. 156, No. 3. (November 2000), pp. 1299-1308.
    by JP Bielawski, KA Dunn, Z Yang
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:51:12 as ** along with 1 group BioinfoCIPF
  • Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.
    Mol Biol Evol, Vol. 10, No. 2. (March 1993), pp. 271-281.
    by P Pamilo, NO Bianchi
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:43:59 as ** along with 1 group BioinfoCIPF
  • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models.
    Mol Biol Evol, Vol. 17, No. 1. (January 2000), pp. 32-43.
    by Z Yang, R Nielsen
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:42:53 as ** along with 8 people and 1 group bjorns fernan BioNica timflutre Garamonfok ankur_iitg RamuAnandakrishnan Ema BioinfoCIPF
  • New methods for estimating the numbers of synonymous and nonsynonymous substitutions.
    J Mol Evol, Vol. 40, No. 2. (February 1995), pp. 190-226.
    by Y Ina
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:39:12 as ** along with 1 group BioinfoCIPF
  • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.
    Mol Biol Evol, Vol. 2, No. 2. (March 1985), pp. 150-174.
    by WH Li, CI Wu, CC Luo
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:38:44 as ** along with 1 person and 1 group bjorns BioinfoCIPF
  • Unbiased estimation of the rates of synonymous and nonsynonymous substitution.
    J Mol Evol, Vol. 36, No. 1. (January 1993), pp. 96-99.
    by WH Li
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:35:07 as ** along with 1 group BioinfoCIPF
  • A codon-based model of nucleotide substitution for protein-coding DNA sequences.
    Mol Biol Evol, Vol. 11, No. 5. (September 1994), pp. 725-736.
    by N Goldman, Z Yang
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:00:07 as ** along with 5 people and 1 group BioNica usagi-kirin mingzhi gjuggler AtoZ BioinfoCIPF
  • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
    Mol Biol Evol, Vol. 3, No. 5. (September 1986), pp. 418-426.
    by M Nei, T Gojobori
    posted to adaptation positive selection w by hdopazo on 2006-09-08 09:55:19 as ** along with 5 people and 1 group CharlesM jmeppley usagi-kirin ankur_iitg friendpine BioinfoCIPF
  • Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application.
    J Mol Evol, Vol. 16, No. 1. (September 1980), pp. 23-36.
    by T Miyata, T Yasunaga
    posted to adaptation positive selection w by hdopazo on 2006-09-08 09:44:59 as ** along with 1 group BioinfoCIPF
  • Linkage disequilibrium patterns vary substantially among populations
    European Journal of Human Genetics, Vol. aop, No. current. (19 January 2005)
    by Sarah L Sawyer, Namita Mukherjee, Andrew J Pakstis, Lars Feuk, Judith R Kidd, Anthony J Brookes, Kenneth K Kidd
    posted to genomics human popgen snp by hdopazo on 2006-08-11 15:27:04 as ** along with 2 people and 2 groups ladygoat evoltropia CGREL BioinfoCIPF
  • The portability of tagSNPs across populations: A worldwide survey
    Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 323-330.
    by Anna Gonzalez-Neira, Xiayi Ke, Oscar Lao, Francesc Calafell, Arcadi Navarro, David Comas, Howard Cann, Suzannah Bumpstead, Jilur Ghori, Sarah Hunt, Panos Deloukas, Ian Dunham, Lon R Cardon, Jaume Bertranpetit
    posted to genomics human snp by hdopazo on 2006-08-11 15:25:32 as ** along with 1 person and 1 group ashandanj BioinfoCIPF
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to genomics positive selection snp by hdopazo on 2006-08-11 15:21:28 as ** along with 20 people and 7 groups pradiptaray shoshin stevanspringer kentsis bpb balajis indigoviolet ejeffery madhadron breden tiago larios ashandanj livingthingdan djkt mbeautru grahamc suizan iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
  • Interrogating a high-density SNP map for signatures of natural selection.
    Genome Res, Vol. 12, No. 12. (December 2002), pp. 1805-1814.
    by JM Akey, G Zhang, K Zhang, L Jin, MD Shriver
    posted to genomics popgen snp by hdopazo on 2006-08-11 15:09:00 as ** along with 2 people and 1 group JBEgwa01 iris42 BioinfoCIPF
  • Robust inference of positive selection from recombining coding sequences.
    Bioinformatics (7 August 2006)
    by Konrad Scheffler, Darren P P Martin, Cathal Seoighe
    posted to positive recombination selection by hdopazo on 2006-08-11 15:02:39 as ** along with 2 people and 1 group shehroz Natasha BioinfoCIPF
  • Linkage disequilibrium and allele-frequency distributions for 114 single-nucleotide polymorphisms in five populations.
    Am J Hum Genet, Vol. 66, No. 1. (January 2000), pp. 216-234.
    by KA Goddard, PJ Hopkins, JM Hall, JS Witte
    posted to disease genomics human snp by hdopazo on 2006-08-11 14:51:02 as ** along with 1 person and 1 group jyuh BioinfoCIPF
  • Genomic signatures of positive selection in humans and the limits of outlier approaches
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 980-989.
    by Joanna L Kelley, Jennifer Madeoy, John C Calhoun, Willie Swanson, Joshua M Akey
    posted to genomics popgen positive selection snp by hdopazo on 2006-08-11 14:45:38 as ** along with 1 person and 1 group djkt BioinfoCIPF
  • A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.
    Bioinformatics (15 July 2006)
    by Chun Zhang, Dione K K Bailey, Tarif Awad, Guoying Liu, Guoliang Xing, Manqiu Cao, Venu Valmeekam, Jacques Retief, Hajime Matsuzaki, Margaret Taub, Mark Seielstad, Giulia C C Kennedy
    posted to genomics human popgen positive selection snp by hdopazo on 2006-08-11 14:33:28 as ** along with 1 person and 1 group iris42 BioinfoCIPF
  • Resources for Genetic Variation Studies.
    Annu Rev Genomics Hum Genet (7 June 2006)
    by David Serre, Thomas J J Hudson
    posted to coalescence genomics human popgen by hdopazo on 2006-08-11 14:29:40 as ** along with 1 group BioinfoCIPF
  • Insights into recombination from patterns of linkage disequilibrium in humans.
    Genetics, Vol. 167, No. 1. (May 2004), pp. 387-397.
    by SE Ptak, K Voelpel, M Przeworski
    posted to disequilibrium linkage popgen recombination by hdopazo on 2006-08-11 14:27:37 as ** along with 1 person and 2 groups raizada Raizada-Lab BioinfoCIPF
  • Linkage disequilibrium in humans: models and data.
    Am J Hum Genet, Vol. 69, No. 1. (July 2001), pp. 1-14.
    by JK Pritchard, M Przeworski
    posted to disequilibrium linkage popgen by hdopazo on 2006-08-11 14:26:19 as ** along with 1 group BioinfoCIPF
  • Linkage disequilibrium: what history has to tell us.
    Trends Genet, Vol. 18, No. 2. (February 2002), pp. 83-90.
    by M Nordborg, S Tavaré
    posted to coalescence disequilibrium linkage popgen by hdopazo on 2006-08-11 14:24:28 as ** along with 1 person and 1 group pcahan1 BioinfoCIPF
  • Divergence of the genes on human chromosome 21 between human and other hominoids and variation of substitution rates among transcription units.
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8331-8336.
    by J Shi, H Xi, Y Wang, C Zhang, Z Jiang, K Zhang, Y Shen, L Jin, K Zhang, W Yuan, Y Wang, J Lin, Q Hua, F Wang, S Xu, S Ren, S Xu, G Zhao, Z Chen, L Jin, W Huang
    posted to comparative genomics human primates by hdopazo on 2006-08-10 11:53:34 as ** along with 2 people and 1 group Iden-J_GluR usagi-kirin BioinfoCIPF
  • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
    Science, Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854.
    by P Khaitovich, I Hellmann, W Enard, K Nowick, M Leinweber, H Franz, G Weiss, M Lachmann, S Pääbo
    posted to compgenomics expression gene human by hdopazo on 2006-08-10 11:47:55 as ** along with 7 people and 2 groups balicea madhadron nickluscombe djkt mikaelhuss JeffR100 usagi-kirin EBI-regulation BioinfoCIPF
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:46:39 as ** along with 15 people and 5 groups shoshin stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard djkt JBEgwa01 ramensky Garamonfok iris42 dmc EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
  • Positive selection in MAOA gene is human exclusive: determination of the putative amino acid change selected in the human lineage.
    Hum Genet, Vol. 115, No. 5. (October 2004), pp. 377-386.
    by AM Andrés, M Soldevila, A Navarro, KK Kidd, B Oliva, J Bertranpetit
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:45:24 as ** along with 1 person and 1 group rhancock BioinfoCIPF
  • A scan for positively selected genes in the genomes of humans and chimpanzees.
    PLoS Biol, Vol. 3, No. 6. (June 2005)
    by R Nielsen, C Bustamante, AG Clark, S Glanowski, TB Sackton, MJ Hubisz, A Fledel-Alon, DM Tanenbaum, D Civello, TJ White, J J Sninsky, MD Adams, M Cargill
    posted to compgenomics human positive selection by hdopazo on 2006-08-10 11:44:05 as ** along with 6 people and 3 groups stevanspringer jwortman bpb penka djkt iris42 Nie FAB-lab BioinfoCIPF
  • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
    Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963.
    by AG Clark, S Glanowski, R Nielsen, PD Thomas, A Kejariwal, MA Todd, DM Tanenbaum, D Civello, F Lu, B Murphy, S Ferriera, G Wang, X Zheng, TJ White, JJ Sninsky, MD Adams, M Cargill
    posted to compgenomics human positive selection by hdopazo on 2006-08-10 11:43:15 as ** along with 4 people and 1 group gjuggler Ema ejeffery djkt BioinfoCIPF
  • Whole-Genome Patterns of Common DNA Variation in Three Human Populations
    Science, Vol. 307, No. 5712. (18 February 2005), pp. 1072-1079.
    by David A Hinds, Laura L Stuve, Geoffrey B Nilsen, Eran Halperin, Eleazar Eskin, Dennis G Ballinger, Kelly A Frazer, David R Cox
    posted to human positive selection snp by hdopazo on 2006-08-10 11:41:13 as ** along with 6 people and 1 group jshapiro mercaptan akeyj saxonov Archaeogenetics djkt BioinfoCIPF
  • Population history and natural selection shape patterns of genetic variation in 132 genes.
    PLoS Biol, Vol. 2, No. 10. (October 2004)
    by JM Akey, MA Eberle, MJ Rieder, CS Carlson, MD Shriver, DA Nickerson, L Kruglyak
    posted to no-tag by hdopazo on 2006-08-10 11:38:27 as ** along with 1 group BioinfoCIPF
  • Detecting recent positive selection in the human genome from haplotype structure
    Nature, Vol. 419, No. 6909. (24 October 2002), pp. 832-837.
    by Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J Mcdonald, Hans C Ackerman, Sarah J Campbell, David Altshuler, Richard Cooper, Dominic Kwiatkowski, Ryk Ward, Eric S Lander
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:37:22 as ** along with 5 people and 1 group balicea jasonflannick brant ausiddiqui djkt BioinfoCIPF
  • Positive Natural Selection in the Human Lineage
    Science, Vol. 312, No. 5780. (16 June 2006), pp. 1614-1620.
    by PC Sabeti, SF Schaffner, B Fry, J Lohmueller, P Varilly, O Shamovsky, A Palma, TS Mikkelsen, D Altshuler, ES Lander
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:32:12 as ** along with 7 people and 4 groups jasonflannick dchughes cmm larios djkt ramensky iris42 FAB-lab G4ID BioinfoCIPF Genetics-of-Gambling
  • Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia.
    Mol Biol Evol, Vol. 22, No. 5. (May 2005), pp. 1246-1253.
    by H Philippe, N Lartillot, H Brinkmann
    posted to ecdysozoa phylogenomics by hdopazo on 2006-08-04 17:56:08 as ** along with 1 group BioinfoCIPF
  • Synonymous and nonsynonymous rate variation in nuclear genes of mammals
    J Mol Evol., Vol. 46 (1998), pp. 409-418.
    by Nielsen
    posted to adaptation positive selection by hdopazo on 2006-07-21 17:37:58 as read along with 1 group BioinfoCIPF
  • Adaptive Molecular Evolution
    (2003)
    by Z Yang
    edited by D Balding, M Bishop, Cannings
    posted to adaptation positive selection by hdopazo on 2006-07-21 17:37:45 as read along with 1 group BioinfoCIPF
  • Hearing silence: non-neutral evolution at synonymous sites in mammals.
    Nature Review in Genetics, Vol. 7 (2006), pp. 98-108.
    by J Chamary, J Parmley, LD Hurst
    posted to bibtex-import by hdopazo on 2006-07-21 17:37:35 as read along with 1 group BioinfoCIPF
  • Statistical Methods in Molecular Evolution. (Statistics for Biology and Health)
    (2004)
    by Nielsen
    posted to bibtex-import by hdopazo on 2006-07-21 17:37:26 as read along with 1 group BioinfoCIPF
  • Handbook of Statistical Genetics
    (2003)
    by D Balding, M Bishop, Cannings
    posted to bibtex-import by hdopazo on 2006-07-21 17:37:17 as read along with 1 group BioinfoCIPF
  • Phylogenomics and the reconstruction of the tree of life
    Nature Review in Genetics, Vol. 6 (2005), pp. 361-375.
    by F Delsuc, H Brinkmann, H Philippe
    posted to bibtex-import by hdopazo on 2006-07-21 17:37:05 as read along with 1 group BioinfoCIPF
  • Phylogenetic methods come of age: testing hypotheses in an evolutionary context
    Science, Vol. 276 (1997), pp. 227-232.
    by JP Huelsenbeck, B Rannala
    posted to bibtex-import by hdopazo on 2006-07-21 17:36:56 as read along with 1 group BioinfoCIPF
  • Pattern and timing of gene duplication in animal genomes
    Genome Res, Vol. 11 (2001), pp. 1842-1847.
    by R Friedman, AL Hughes
    posted to bibtex-import by hdopazo on 2006-07-21 17:36:48 as read along with 1 group BioinfoCIPF
  • Adaptive evolution after gene duplication
    Trends Genet, Vol. 18 (2002), pp. 433-434.
    by AL Hughes
    posted to bibtex-import by hdopazo on 2006-07-21 17:36:34 as read along with 1 group BioinfoCIPF
  • Homology a personal view on some of the problems
    Trends Genet, Vol. 16 (2000), pp. 227-231.
    by WM Fitch
    posted to bibtex-import by hdopazo on 2006-07-21 17:36:14 as read along with 1 group BioinfoCIPF
  • Bayesian inference of phylogeny and its impact on evolutionary biology
    Science, Vol. 294 (2001), pp. 2310-2314.
    by JP Huelsenbeck, F Ronquist, R Nielsen, JP Bollback
    posted to bibtex-import by hdopazo on 2006-07-21 17:36:06 as read along with 1 group BioinfoCIPF
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