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heliopais microarray [79 articles]

Recent papers added to heliopais library classified by the tag microarray. You can also see everyone's microarray.
  • Microarray-based expression profiling and informatics
    Current Opinion in Biotechnology, Vol. 19, No. 1. (February 2008), pp. 26-29.
    by Richard Simon
    posted to review microarray by heliopais on 2008-05-15 17:25:40 as ** along with 2 people jyuh dchughes
  • Microarray gene expression profiling of human osteoarthritic bone suggests altered bone remodelling, WNT and TGF beta/BMP signalling
    Arthritis Research & Therapy, Vol. 9 (27 September 2007), R100.
    by Blair Hopwood, Anna Tsykin, David M Findlay, Nicola L Fazzalari
    posted to microarray bone_formation by heliopais on 2008-04-25 14:39:45 as ** along with 1 person jayster4
  • The effect of replication on gene expression microarray experiments
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1620-1627.
    by Paul Pavlidis, Qinghong Li, William S Noble
    posted to microarray by heliopais on 2008-04-11 12:00:37 as **
  • Empirical Bayes models for multiple probe type microarrays at the probe level
    BMC Bioinformatics, Vol. 9 (20 March 2008), 156.
    by Magnus Astrand, Petter Mostad, Mats Rudemo
    posted to differential_expression microarray by heliopais on 2008-03-26 09:43:29 as **** along with 1 person ptrobajo
  • Can subtle changes in gene expression be consistently detected with different microarray platforms?
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Paola Pedotti, Peter ' Hoen, Erno Vreugdenhil, Geert Schenk, Rolf Vossen, Yavuz Ariyurek, Mattias de Hollander, Rowan Kuiper, Gertjan van Ommen, Johan den Dunnen, Judith Boer, Renee de Menezes
    posted to microarray by heliopais on 2008-03-11 10:04:26 as **
  • MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis.
    Genome Research, Vol. 18, No. 3. (29 January 2008), pp. 404-411.
    by Zhongmin Tian, Andrew SS Greene, Jennifer LL Pietrusz, Isaac RR Matus, Mingyu Liang
    posted to microarray microrna microrna_target_prediction by heliopais on 2008-03-05 13:47:19 as ** along with 3 people and 1 group lp2 jyuh maralena microRNA
  • Dicer-dependent pathways regulate chondrocyte proliferation and differentiation
    Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 1949-1954.
    by Tatsuya Kobayashi, Jun Lu, Bradley S Cobb, Stephen J Rodda, Andrew P Mcmahon, Ernestina Schipani, Matthias Merkenschlager, Henry M Kronenberg
    posted to chondrocyte dicer microarray microrna by heliopais on 2008-03-04 15:40:12 as read along with 1 group microRNA
  • Genome-Wide Expression Profiling Reveals EBV-Associated Inhibition of MHC Class I Expression in Nasopharyngeal Carcinoma
    Cancer Res, Vol. 66, No. 16. (15 August 2006), pp. 7999-8006.
    by Srikumar Sengupta, Johan A den Boon, I-How Chen, Michael A Newton, David B Dahl, Meng Chen, Yu-Juen Cheng, William H Westra, Chien-Jen Chen, Allan Hildesheim, Bill Sugden, Paul Ahlquist
    posted to gene_set_analysis microarray random_set by heliopais on 2008-02-29 14:37:08 as ***
  • Regulatory networks: linking microarray data to systems biology.
    Mechanisms of Ageing and Development, Vol. 128, No. 1. (January 2007), pp. 168-172.
    by Thomas Werner
    posted to genetic_regulatory_network microarray by heliopais on 2008-02-28 16:11:15 as read along with 1 person jfr
  • Genomic approaches to identifying transcriptional regulators of osteoblast differentiation
    Genome Biology, Vol. 4, No. 7. (1 July 2003), 222.
    by Joseph P Stains, Roberto Civitelli
    posted to bone_formation microarray by heliopais on 2008-02-26 15:36:21 as *****
  • Transcriptome analysis of fetal metatarsal long bones by microarray, as a model for endochondral bone formation
    Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Vol. 1763, No. 10. (October 2006), pp. 1031-1039.
    by Rachael V Sugars, Elerin Karner, Ulrika Petersson, Bernhard Ganss, Mikael Wendel
    posted to bone_formation microarray by heliopais on 2008-02-26 15:11:14 as ****
  • A gene expression profile for endochondral bone formation: oligonucleotide microarrays establish novel connections between known genes and BMP-2-induced bone formation in mouse quadriceps
    Bone, Vol. 33, No. 1. (July 2003), pp. 46-63.
    by Brian M Clancy, Joyce D Johnson, Andre-Jean Lambert, Saeid Rezvankhah, Anthony Wong, Christine Resmini, Jeffrey L Feldman, Scott Leppanen, Debra D Pittman
    posted to bone_formation microarray by heliopais on 2008-02-26 15:06:58 as **
  • Discovery of osteoblast-associated genes using cDNA microarrays
    Bone, Vol. 30, No. 3. (March 2002), pp. 463-471.
    by A Raouf, A Seth
    posted to bone_formation microarray by heliopais on 2008-02-26 15:01:11 as **
  • Identification of genes responsible for osteoblast differentiation from human mesodermal progenitor cells
    Proceedings of the National Academy of Sciences, Vol. 100, No. 6. (18 March 2003), pp. 3305-3310.
    by Huilin Qi, Dean J Aguiar, Shelly M Williams, Alison La Pean, Wei Pan, Catherine M Verfaillie
    posted to bone_formation microarray by heliopais on 2008-02-26 14:51:47 as **
  • Microarray analysis on Runx2-deficient mouse embryos reveals novel Runx2 functions and target genes during intramembranous and endochondral bone formation.
    Bone (13 June 2006)
    by Bart L T L Vaes, Patricia Ducy, Anneke M M Sijbers, José M A M Hendriks, Eugene P P van Someren, Nanning G G de Jong, Edwin R R van den Heuvel, Wiebe Olijve, Everardus J J J van Zoelen, Koen J J Dechering
    posted to chondrocyte microarray by heliopais on 2008-02-25 15:53:40 as ***** along with 1 person Schmidtc
  • Activation of genes for growth factor and cytokine pathways late in chondrogenic differentiation of ATDC5 cells
    Genomics, Vol. 88, No. 1. (July 2006), pp. 52-64.
    by Aki Osawa, Masaki Kato, Eriko Matsumoto, Katsuro Iwase, Takashi Sugimoto, Tsutomu Matsui, Hiroshi Ishikura, Sumio Sugano, Hisashi Kurosawa, Masaki Takiguchi, Naohiko Seki
    posted to chemokine chondrocyte microarray by heliopais on 2008-02-25 14:57:00 as read
  • Expression profiling of Dexamethasone-treated primary chondrocytes identifies targets of glucocorticoid signalling in endochondral bone development
    BMC Genomics, Vol. 8 (01 July 2007), 205.
    by Claudine G James, Veronica Ulici, Jan Tuckermann, Michael T Underhill, Frank Beier
    posted to chondrocyte microarray by heliopais on 2008-02-25 13:52:56 as **
  • Cartilage-selective genes identified in a genome-scale analysis of non-cartilage and cartilage gene expression.
    BMC Genomics, Vol. 8 (12 June 2007), 165.
    by Vincent A Funari, Allen Day, Deborah Krakow, Zachary A Cohn, Zugen Chen, Stanley F Nelson, Daniel H Cohn
    posted to chondrocyte microarray by heliopais on 2008-02-25 11:38:58 as *****
  • CARRIE web service: automated transcriptional regulatory network inference and interactive analysis.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by PM Haverty, MC Frith, Z Weng
    posted to microarray transcription_factor by heliopais on 2008-02-22 16:14:30 as ***** along with 2 people xwbcn dquest
  • Principal component analysis for predicting transcription-factor binding motifs from array-derived data.
    BMC Bioinformatics, Vol. 6 (2005)
    by Y Liu, MP Vincenti, H Yokota
    posted to binding_site_prediction microarray transcription_factor by heliopais on 2008-02-22 15:14:46 as ** along with 1 person dquest
  • Analysis of promoter regions of co-expressed genes identified by microarray analysis
    BMC Bioinformatics, Vol. 7 (17 August 2006), 384.
    by Srinivas Veerla, Mattias Hoglund
    posted to microarray transcription_factor by heliopais on 2008-02-22 14:58:51 as **** along with 4 people and 1 group jfr gpalidwor giovanni SeungjoonOh GeschwindLab
  • Biological microarray interpretation: The rules of engagement
    Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, Vol. 1759, No. 7. (July 2006), pp. 319-327.
    by Rainer Breitling
    posted to microarray review by heliopais on 2008-02-22 14:29:06 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Multievidence microarray mining.
    Trends Genet, Vol. 21, No. 10. (October 2005), pp. 553-558.
    by M Seifert, M Scherf, A Epple, T Werner
    posted to functional_annotation microarray by heliopais on 2008-02-22 13:59:50 as ***** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Statistical tests for differential expression in cDNA microarray experiments
    Genome Biology, Vol. 4, No. 4. (2003)
    by Xiangqin Cui, Gary Churchill
    posted to differential_expression microarray by heliopais on 2008-02-21 10:51:33 as ** along with 1 person waszak
  • Interpretation of ANOVA models for microarray data using PCA
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 184-190.
    by De Haan, , Wehrens, , Bauerschmidt, , Piek, , Schaik, RC Van, Buydens,
    posted to microarray by heliopais on 2008-02-21 10:44:26 as **
  • Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays.
    Proc Natl Acad Sci U S A, Vol. 102, No. 25. (21 June 2005), pp. 8961-8965.
    by KH Pan, CJ Lih, SN Cohen
    posted to differential_expression microarray by heliopais on 2008-02-21 09:54:10 as ** along with 2 people textoris shikin
  • Statistical tools for synthesizing lists of differentially expressed features in related experiments
    Genome Biology, Vol. 8 (11 April 2007), R54.
    by Marta Blangiardo, Sylvia Richardson
    posted to differential_expression microarray by heliopais on 2008-02-19 14:07:10 as **** along with 4 people jyuh jfr dayjm ajgentles
  • Microarray data analysis: from disarray to consolidation and consensus
    Nature Reviews Genetics, Vol. 7, No. 1. (January 2006), pp. 55-65.
    by David B Allison, Xiangqin Cui, Grier P Page, Mahyar Sabripour
    posted to microarray by heliopais on 2008-02-19 11:35:33 as **** along with 21 people and 2 groups jo_davies giovenko jyuh barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura shikin minostro structural_bioinformatics Bioinformatics
  • VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Hans Kestler, Andre Muller, Johann Kraus, Malte Buchholz, Thomas Gress, Hongfang Liu, David Kane, Barry Zeeberg, John Weinstein
    posted to gene_ontology microarray by heliopais on 2008-01-30 09:53:27 as **** along with 2 people jyuh barriot
  • Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by David Smith, Pal Saetrom, Ola Snove, Cathryn Lundberg, Guillermo Rivas, Carlotta Glackin, Garrett Larson
    posted to microarray microrna motif_finding by heliopais on 2008-01-29 09:48:45 as *** along with 3 people and 1 group jfr shigepong xili03 microRNA
  • EzArray: a web-based highly automated Affymetrix expression array data management and analysis system
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuerong Zhu, Yuelin Zhu, Wei Xu
    posted to microarray by heliopais on 2008-01-25 09:57:45 as * along with 4 people zhouyu jfr jyuh cannin
  • Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alexandre Kuhn, Ruth L Carter, Mauro Delorenzi
    posted to annotation microarray by heliopais on 2008-01-18 09:37:07 as * along with 7 people zhouyu jyuh jfr balicea dullhunk ghattem RamuAnandakrishnan
  • Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
    Genome Biology, Vol. 7 (17 October 2006), R93.
    by David M Levine, David R Haynor, John Castle, Sergey Stepaniants, Matteo Pellegrini, Mao Mao, Jason M Johnson
    posted to microarray microarray_functional_analysis by heliopais on 2008-01-11 15:12:47 as **** along with 3 people and 1 group dragonrez jfr ealloza BioinfoCIPF
  • Classification of microarray data using gene networks
    BMC Bioinformatics, Vol. 8 (01 February 2007), 35.
    by Franck Rapaport, Andrei Zinovyev, Marie Dutreix, Emmanuel Barillot, Jean-Philippe Vert
    posted to microarray microarray_functional_analysis by heliopais on 2008-01-11 15:00:34 as *** along with 1 person jfr
  • Microarray Analyses of Gene Expression during Chondrocyte Differentiation Identifies Novel Regulators of Hypertrophy
    Mol. Biol. Cell, Vol. 16, No. 11. (1 November 2005), pp. 5316-5333.
    by Claudine G James, Appleton, Veronica Ulici, Michael T Underhill, Frank Beier
    posted to chondrocyte microarray by heliopais on 2008-01-11 14:44:24 as ****
  • 'The 39 steps' in gene expression profiling: critical issues and proposed best practices for microarray experiments.
    Drug Discov Today, Vol. 10, No. 17. (1 September 2005), pp. 1175-1182.
    by S Imbeaud, C Auffray
    posted to microarray microarray_functional_analysis by heliopais on 2008-01-11 14:31:30 as read along with 1 person jfr
  • Pathways to the analysis of microarray data
    Trends in Biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435.
    by Keira R Curtis, Matej Oresic, Antonio Vidal-Puig
    posted to gene_ontology microarray microarray_functional_analysis by heliopais on 2008-01-11 14:22:43 as **** along with 5 people and 1 group snuppepuppan textoris Ayest tardigrade ealloza BioinfoCIPF
  • Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by WK Lim, K Wang, C Lefebvre, A Califano
    posted to genetic_regulatory_network microarray by heliopais on 2008-01-08 15:21:52 as ** along with 2 people shigepong ghattem
  • Qualitative assessment of gene expression in affymetrix genechip arrays
    Physica A: Statistical and Theoretical Physics, Vol. 373 (1 January 2007), pp. 486-496.
    by Radhakrishnan Nagarajan, Meenakshi Upreti
    posted to microarray by heliopais on 2008-01-08 14:38:34 as **
  • Non-linear tests for identifying differentially expressed genes or genetic networks
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 919-923.
    by Hao Xiong
    posted to differential_expression microarray by heliopais on 2007-12-12 14:58:01 as ***
  • How high is the level of technical noise in microarray data?
    Biology Direct, Vol. 2 (11 April 2007), 9.
    by Lev Klebanov, Andrei Yakovlev
    posted to microarray by heliopais on 2007-12-12 13:36:41 as * along with 2 people jfr ghattem
  • Systematic identification of microRNA functions by combining target prediction and expression profiling.
    Nucleic Acids Research, Vol. 34, No. 5. (20 March 2006), pp. 1646-1652.
    by Xiaowei Wang, Xiaohui Wang
    posted to microarray microrna microrna_microarray microrna_target_prediction by heliopais on 2007-12-10 17:54:59 as read along with 5 people and 2 groups jfr mortenlindow andersbj mtagaya mgaldzic microRNA CHIP
  • OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Morgan Price, Adam Arkin, Eric Alm
    posted to bacteria differential_expression microarray by heliopais on 2007-12-10 12:52:06 as **
  • Identification of Differentially Expressed MicroRNAs During the Development of Chinese Murine Mammary Gland
    Journal of Genetics and Genomics, Vol. 34, No. 11. (November 2007), pp. 966-973.
    by Chunmei Wang, Qingzhang Li
    posted to microarray microrna by heliopais on 2007-11-30 17:26:16 as **
  • Within the fold: assessing differential expression measures and reproducibility in microarray assays
    Genome Biology, Vol. 3, No. 11. (24 October 2002), pp. research0062.1-research0062.12.
    by Ivana Yang, Emily Chen, Jeremy Hasseman, Wei Liang, Bryan Frank, Shuibang Wang, Vasily Sharov, Alexander Saeed, Joseph White, Jerry Li, Norman Lee, Timothy Yeatman, John Quackenbush
    posted to microarray poster_amigus by heliopais on 2007-11-28 11:47:12 as **
  • Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data
    BMC Bioinformatics, Vol. 7 (03 October 2006), 426.
    by Alex Lewin, Ian C Grieve
    posted to gene_ontology microarray by heliopais on 2007-11-28 11:32:48 as ** along with 5 people and 2 groups ealloza giovanni jdiggans uprock waghsk BioinfoCIPF GeschwindLab
  • A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array
    Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. e31-e31.
    by Jeremy Harbig, Robert Sprinkle, Steven A Enkemann
    posted to microarray probesets by heliopais on 2007-11-28 11:30:14 as ** along with 2 people jfr incovoma
  • Computational approaches to analysis of DNA microarray data.
    Methods Inf Med, Vol. 45 Suppl 1 (2006), pp. 91-103.
    by J Quackenbush
    posted to expressionvalues microarray by heliopais on 2007-11-28 11:26:09 as **** along with 2 people alokm maldi
  • Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data
    BMC Bioinformatics, Vol. 8 (11 June 2007), 194.
    by Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li
    posted to microarray probesets by heliopais on 2007-11-28 10:41:59 as *** along with 2 people jyuh jfr
  • Microarray data normalization and transformation.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 496-501.
    by J Quackenbush
    posted to microarray sdeg by heliopais on 2007-11-28 10:13:13 as read along with 4 people textoris alokm chad_davis schuylrp
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