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idonaldson crm [11 articles]

Recent papers added to idonaldson library classified by the tag crm. You can also see everyone's crm.
  • DiRE: identifying distant regulatory elements of co-expressed genes
    Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W133-139.
    by Valer Gotea, Ivan Ovcharenko
    posted to tool crm by idonaldson on 2008-07-08 09:08:50 as ** along with 1 person Borelli
  • Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
    Genome Res. (15 May 2008), gr.072769.107.
    by Dan Xie, Jun Cai, Na-Yu Chia, Huck Ng, Sheng Zhong
    posted to tool motif-discovery crm cis-regulation by idonaldson on 2008-05-27 09:53:11 as *** along with 5 people yoonk phoenixzxl isimpson GustavoLacerda ihpark
  • Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors
    BMC Bioinformatics, Vol. 8 (09 November 2007), 437.
    by Xueping Yu, Jimmy Lin, Donald J Zack, Jiang Qian
    posted to crm tfbs tissue-specific by idonaldson on 2008-02-15 09:28:41 as *** along with 8 people snow_dragon bootsy jyuh chad_davis mikaelhuss nklee maximilianh njcitulike
  • A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--A case study using E2F1.
    Genome Res (19 October 2006)
    by Victor X X Jin, Alina Rabinovich, Sharon L L Squazzo, Roland Green, Peggy J J Farnham
    posted to chip-on-chip crm tfbs tool by idonaldson on 2007-11-08 08:50:56 as ***** along with 2 people aprasad jfr
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to conserved crm expression tfbs by idonaldson on 2007-11-06 09:23:09 as read along with 12 people and 2 groups ana brant cwbrown aswin cjeans zwang cabbagezs nklee maximilianh sb_journal_club kristen barwil EisenLab Motif Discovery
  • Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by S Aerts, J van Helden, O Sand, BA Hassan
    posted to conserved crm tfbs by idonaldson on 2007-11-06 09:17:37 as ** along with 4 people and 1 group isimpson brant maximilianh barwil cis-regulatory-evolution
  • MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
    BMC Bioinformatics, Vol. 8 (22 March 2007), 100.
    by Mamoru Kato, Tatsuhiko Tsunoda
    posted to cis-regulation crm tool by idonaldson on 2007-11-06 09:15:33 as **** along with 3 people and 1 group isimpson cwbrown nklee EisenLab
  • Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules
    Algorithms for Molecular Biology, Vol. 2 (10 October 2007), 13.
    by Valentina Boeva, Julien Clement, Mireille Regnier, Mikhail A Roytberg, Vsevolod J Makeev
    posted to crm motif-discovery statistics by idonaldson on 2007-11-06 09:14:45 as ** along with 2 people and 1 group isimpson guos csb_journal_club_public
  • Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development.
    Proc Natl Acad Sci U S A (25 October 2007)
    by John E E Pimanda, Katrin Ottersbach, Kathy Knezevic, Sarah Kinston, Wan Y I Y Chan, Nicola K K Wilson, Josette-Renée R Landry, Andrew D D Wood, Anja Kolb-Kokocinski, Anthony R R Green, David Tannahill, Georges Lacaud, Valerie Kouskoff, Berthold Göttgens
    posted to cis-regulation crm gottgens haematopoiesis networks tfbs by idonaldson on 2007-10-29 10:30:29 as *** along with 2 people jjray maximilianh
  • TFBScluster web server for the identification of mammalian composite regulatory elements.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by IJ Donaldson, B Göttgens
    posted to cis-regulation crm me tfbs tool by idonaldson on 2007-10-19 12:51:59 as read
  • TFBScluster: a resource for the characterization of transcriptional regulatory networks.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3058-3059.
    by IJ Donaldson, M Chapman, B Göttgens
    posted to cis-regulation crm me tfbs tool by idonaldson on 2007-10-19 12:48:27 as read along with 1 person dquest
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