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inesdesantiago library [69 articles]

Статьи, недавно добавленные в библиотеку inesdesantiago .
  • notes Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 813-822.
    by Ian B Dodd, Mille A Micheelsen, Kim Sneppen, Genevieve Thon
    posted to epigenetics histone-modifications mechanisms modeling by inesdesantiago on 2008-01-19 20:33:02 as ** along with 1 person and 1 group biomcgary Marcotte_Lab
  • notes Dynamics, stability and inheritance of somatic DNA methylation imprints
    Journal of Theoretical Biology, Vol. 242, No. 4. (21 October 2006), pp. 890-899.
    by Laura B Sontag, Matthew C Lorincz, Georg
    posted to epigenetics inheritance mechanisms methylation modeling by inesdesantiago on 2008-01-19 20:31:13 as **
  • notes Differences in DNA methylation patterns between humans and chimpanzees
    Current Biology, Vol. 14, No. 4. (17 February 2004), pp. R148-R149.
    by Wolfgang Enard, Anne Fassbender, Fabian Model, Peter Adorjan, Svante Paabo, Alexander Olek
    posted to epigenetics integration methylation multiple-species by inesdesantiago on 2008-01-19 20:14:06 as **
  • notes Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 169-181.
    by Bradley E Bernstein, Michael Kamal, Kerstin Lindblad-Toh, Stefan Bekiranov, Dione K Bailey, Dana J Huebert, Scott Mcmahon, Elinor K Karlsson, Edward J Kulbokas, Thomas R Gingeras, Stuart L Schreiber, Eric S Lander
    posted to epigenetics histone-modifications integration multiple-species by inesdesantiago on 2008-01-19 20:12:37 as ** along with 2 people olympos caseybrown
  • notes Heritable rather than age-related environmental and stochastic factors dominate variation in DNA methylation of the human IGF2/H19 locus
    Human Molecular Genetics, Vol. 16, No. 5. (1 March 2007), pp. 547-554.
    by Heijmans, T Bastiaan, Kremer, Dennis, Tobi, W Elmar, Boomsma, I Dorret, Slagboom, P Eline
    posted to chromatin-architecture epigenetics methylation by inesdesantiago on 2008-01-19 19:53:28 as ** along with 1 person epigenetics
  • notes From The Cover: Epigenetic differences arise during the lifetime of monozygotic twins
    Proceedings of the National Academy of Sciences, Vol. 102, No. 30. (26 July 2005), pp. 10604-10609.
    by Mario F Fraga, Esteban Ballestar, Maria F Paz, Santiago Ropero, Fernando Setien, Maria L Ballestar, Damia Heine-Suner, Juan C Cigudosa, Miguel Urioste, Javier Benitez, Manuel Boix-Chornet, Abel Sanchez-Aguilera, Charlotte Ling, Emma Carlsson, Pernille Poulsen, Allan Vaag, Zarko Stephan, Tim D Spector, Yue-Zhong Wu, Christoph Plass, Manel Esteller
    posted to chromatin-architecture epigenetics histone-modifications methylation by inesdesantiago on 2008-01-19 19:52:52 as ** along with 1 person fridjians32citations
  • notes THE HISTORY OF CANCER EPIGENETICS
    Nat Rev Cancer, Vol. 4, No. 2. (February 2004), pp. 143-153.
    by Andrew P Feinberg, Benjamin Tycko
    posted to cancer epigenetics by inesdesantiago on 2008-01-19 18:16:59 as ** along with 1 person olympos
  • notes Genome-wide transcription and the implications for genomic organization.
    Nat Rev Genet (8 May 2007)
    by Philipp Kapranov, Aarron T T Willingham, Thomas R R Gingeras
    posted to chromatin-architecture epigenetics review transcription-control by inesdesantiago on 2008-01-19 18:00:37 as *** along with 13 people and 5 groups maximilianh jyuh balicea xico dchughes kengg sebastien_vigneau zwang ajgentles asddd hanansh antonkratz vietanh0 Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling
  • notes Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation.
    PLoS Comput Biol, Vol. 2, No. 9. (1 September 2006)
    by Zhong Wang, Huntington F F Willard, Sayan Mukherjee, Terrence S S Furey
    posted to epigenetics prediction xchr by inesdesantiago on 2008-01-19 17:38:12 as ** along with 1 person vplagnol
  • notes Genome-wide prediction of imprinted murine genes.
    Genome Res, Vol. 15, No. 6. (June 2005), pp. 875-884.
    by PP Luedi, AJ Hartemink, RL Jirtle
    posted to epigenetics imprinted-genes prediction by inesdesantiago on 2008-01-19 17:36:38 as ** along with 1 person and 1 group stevanspringer FAB-lab
  • notes Genome-Wide Prediction of Polycomb/Trithorax Response Elements in Drosophila melanogaster
    Developmental Cell, Vol. 5, No. 5. (November 2003), pp. 759-771.
    by Leonie Ringrose, Marc Rehmsmeier, Jean-Maurice Dura, Renato Paro
    posted to epigenetics polycomb prediction transcription-control by inesdesantiago on 2008-01-19 17:31:50 as **
  • notes Predicting the in vivo signature of human gene regulatory sequences.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by WS Noble, S Kuehn, R Thurman, M Yu, J Stamatoyannopoulos
    posted to epigenetics prediction transcription-control by inesdesantiago on 2008-01-19 17:31:24 as ** along with 2 people and 1 group tuck royalzhang Computational-Genomics
  • notes A genomic code for nucleosome positioning
    Nature, Vol. 442, No. 7104. (19 July 2006), pp. 772-778.
    by Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, Annchristine Thåström, Yair Field, Irene K Moore, Ji-Ping Z Wang, Jonathan Widom
    posted to epigenetics nucleossome-positioning prediction by inesdesantiago on 2008-01-19 17:25:06 as ** along with 14 people and 10 groups kentsis aalibes alokm marcius indigoviolet dchughes cconboy neveaire kengg johncumbers joshuashen joepickrell GustavoLacerda rschulz Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID BioinfoCIPF SGU-CIPF Plantandetc Genetics-of-Gambling
  • notes Predicting aberrant CpG island methylation
    Proceedings of the National Academy of Sciences, Vol. 100, No. 21. (14 October 2003), pp. 12253-12258.
    by FA Feltus, EK Lee, JF Costello, C Plass, PM Vertino
    posted to epigenetics methylation prediction by inesdesantiago on 2008-01-19 17:20:39 as ** along with 1 person kaarsinogen
  • notes Predicting methylation status of CpG islands in the human brain
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2204-2209.
    by Fang, Fang, Fan, Shicai, Zhang, Xuegong, Zhang, Q Michael
    posted to epigenetics methylation prediction by inesdesantiago on 2008-01-19 17:16:32 as ** along with 1 person kaarsinogen
  • notes CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure
    PLoS Genetics, Vol. 2, No. 3. (1 March 2006), e26.
    by Christoph Bock, Martina Paulsen, Sascha Tierling, Thomas Mikeska, Thomas Lengauer, Jörn Walter
    posted to epigenetics methylation prediction by inesdesantiago on 2008-01-19 17:15:29 as ** along with 3 people rdiaz olympos cberry
  • notes Structure, function and evolution of CpG island promoters.
    Cell Mol Life Sci, Vol. 60, No. 8. (August 2003), pp. 1647-1658.
    by F Antequera
    posted to cpg epigenetics review transcription-control by inesdesantiago on 2008-01-19 17:08:19 as * along with 2 people imouthesmp aprasad
  • notes Tissue-specific regulatory elements in mammalian promoters
    Mol Syst Biol, Vol. 3 (16 January 2007)
    by Andrew D Smith, Pavel Sumazin, Michael Q Zhang
    posted to epigenetics prediction transcription-control by inesdesantiago on 2008-01-19 17:02:22 as ** along with 3 people and 2 groups dchughes SeungjoonOh heliopais G4ID Genetics-of-Gambling
  • notes Promoter prediction analysis on the whole human genome
    Nature Biotechnology, Vol. 22, No. 11. (04 November 2004), 1467.
    by Vladimir B Bajic, Sin L Tan, Yutaka Suzuki, Sumio Sugano
    posted to epigenetics prediction review transcription-control by inesdesantiago on 2008-01-19 16:59:23 as ** along with 1 person ep161302
  • notes Identifying synergistic regulation involving c-Myc and sp1 in human tissues.
    Nucleic Acids Res, Vol. 35, No. 4. (2007), pp. 1098-1107.
    by F Parisi, P Wirapati, F Naef
    posted to data-analysis epigenetics integration mapping tf-binding by inesdesantiago on 2008-01-19 16:33:29 as *** along with 1 person jfr
  • notes CpG Island Mapping by Epigenome Prediction.
    PLoS Comput Biol, Vol. 3, No. 6. (8 June 2007)
    by Christoph Bock, Jörn Walter, Martina Paulsen, Thomas Lengauer
    posted to cpg data-analysis epigenetics integration mapping prediction by inesdesantiago on 2008-01-19 16:27:43 as **** along with 6 people kaarsinogen sebastien_vigneau zwang oelemento fpattyn rschulz
  • notes Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
    Nat Genet (4 February 2007)
    by Nathaniel D D Heintzman, Rhona K K Stuart, Gary Hon, Yutao Fu, Christina W W Ching, R David D Hawkins, Leah O O Barrera, Sara Van Calcar, Chunxu Qu, Keith A A Ching, Wei Wang, Zhiping Weng, Roland D D Green, Gregory E E Crawford, Bing Ren
    posted to data-analysis epigenetics histone-modifications integration mapping by inesdesantiago on 2008-01-19 16:07:49 as *** along with 7 people and 2 groups kengg djkt mgaldzic olympos skoch3 epigenetics caseybrown CHIP Plantandetc
  • notes Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns
    Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 74-81.
    by Tae-Young Roh, Gang Wei, Catherine M Farrell, Keji Zhao
    posted to data-analysis epigenetics histone-modifications integration mapping by inesdesantiago on 2008-01-19 16:07:08 as *** along with 2 people and 2 groups dchughes epigenetics G4ID Genetics-of-Gambling
  • notes Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 787-797.
    by Zhengdong D Zhang, Alberto Paccanaro, Yutao Fu, Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B Gerstein
    posted to data-analysis encode epigenetics integration transcription-control by inesdesantiago on 2008-01-19 15:30:24 as ** along with 6 people and 4 groups ana Borelli kengg ghattem epigenetics blobbybirdman structural_bioinformatics Bioinformatics Plantandetc UH - Computational Biology
  • notes SXOligoSearch Supporting Document
    (2007)
    by Synamatix
    posted to alignments chipseq epigenetics data-generation-control by inesdesantiago on 2008-01-18 21:45:19 as **
  • notes BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to alignments epigenetics data-generation-control by inesdesantiago on 2008-01-18 21:39:25 as ** along with 18 people and 1 group gpappas talponer operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin EisenLab
  • notes A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:34:08 as ** along with 7 people and 2 groups xingxu miguel tuck eckart_bindewald djkt SeungjoonOh blobbybirdman Bioinformatics UH - Computational Biology
  • notes Tilescope: online analysis pipeline for high-density tiling microarray data
    Genome Biology, Vol. 8 (14 May 2007), R81.
    by Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder, Mark Gerstein
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:31:40 as ** along with 2 people jfr caseybrown
  • notes Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
    BMC Bioinformatics, Vol. 8 (26 June 2007), 221.
    by Joern Toedling, Oleg Sklyar, Wolfgang Huber
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:26:16 as *** along with 5 people jyuh jfr ghattem hpaces caseybrown
  • notes TileMap: create chromosomal map of tiling array hybridizations
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3629-3636.
    by Hongkai Ji, Wing H Wong
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:24:08 as ** along with 3 people tuck dquest caseybrown
  • notes High-resolution computational models of genome binding events
    Nature Biotechnology, Vol. 24, No. 8. (09 August 2006), pp. 963-970.
    by Yuan Qi, Alex Rolfe, Kenzie D Macisaac, Georg K Gerber, Dmitry Pokholok, Julia Zeitlinger, Timothy Danford, Robin D Dowell, Ernest Fraenkel, Tommi S Jaakkola, Richard A Young, David K Gifford
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:22:26 as *** along with 4 people jfr wnpx ccr caseybrown
  • notes Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs
    Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509.
    by Simon Cawley, Stefan Bekiranov, Huck H Ng, Philipp Kapranov, Edward A Sekinger, Dione Kampa, Antonio Piccolboni, Victor Sementchenko, Jill Cheng, Alan J Williams, Raymond Wheeler, Brant Wong, Jorg Drenkow, Mark Yamanaka, Sandeep Patel, Shane Brubaker, Hari Tammana, Gregg Helt, Kevin Struhl, Thomas R Gingeras
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 18:48:45 as ** along with 1 person johncumbers
  • notes High-resolution profiling of histone methylations in the human genome.
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837.
    by A Barski, S Cuddapah, K Cui, TY Roh, DE Schones, Z Wang, G Wei, I Chepelev, K Zhao
    posted to chipseq data-analysis data-generation-control epigenetics histone-modifications mapping by inesdesantiago on 2008-01-18 18:33:43 as * along with 7 people and 1 group jyuh kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha Plantandetc
  • notes Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
    posted to chipseq epigenetics data-generation-control by inesdesantiago on 2008-01-18 18:29:05 as * along with 12 people and 1 group jyuh brant dchughes vega kengg vplagnol olympos epigenetics bioyang cabbagezs rschulz slevy03 EisenLab
  • notes ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
    Genomics, Vol. 83, No. 3. (March 2004), pp. 349-360.
    by Michael J Buck, Jason D Lieb
    posted to chip-chip epigenetics review data-generation-control by inesdesantiago on 2008-01-18 18:11:52 as *** along with 1 person epigenetics
  • notes Genome Regulation by Polycomb and Trithorax Proteins
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 735-745.
    by Bernd Schuettengruber, Daniel Chourrout, Michel Vervoort, Benjamin Leblanc, Giacomo Cavalli
    posted to epigenetics mechanisms polycomb review transcription-control by inesdesantiago on 2008-01-18 16:53:45 as ***
  • notes Defining an epigenetic code
    Nature Cell Biology, Vol. 9, No. 1., pp. 2-6.
    by Bryan M Turner
    posted to data-analysis epigenetics histone-modifications mapping mechanisms review by inesdesantiago on 2008-01-18 15:56:50 as ** along with 2 people and 2 groups dchughes Anders G4ID Genetics-of-Gambling
  • notes Gene regulation and large-scale chromatin organization in the nucleus
    Chromosome Research, Vol. 14, No. 1. (February 2006), pp. 117-126.
    by Niall Dillon
    posted to epigenetics mechanisms review transcription-control by inesdesantiago on 2008-01-18 15:15:01 as ***
  • notes Epigenetics and aging: the targets and the marks.
    Trends Genet (6 June 2007)
    by Mario FF Fraga, Manel Esteller
    posted to cancer epigenetics review by inesdesantiago on 2008-01-18 14:54:09 as ** along with 1 person sebastien_vigneau
  • notes Epigenetic Mechanisms of Gene Regulation (Cold Spring Harbor Monograph Series)
    (31 December 1996)
    by Vincenzo
    posted to epigenetics general mechanisms transcription-control by inesdesantiago on 2008-01-18 14:30:45 as **
  • notes Inherited epigenetic variation — revisiting soft inheritance
    Nature Reviews Genetics, Vol. 7, No. 5. (14 March 2006), pp. 395-401.
    by Eric J Richards
    posted to development epigenetics inheritance review by inesdesantiago on 2008-01-18 14:27:11 as **
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