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inesdesantiago library [327 articles]

Статьи, недавно добавленные в библиотеку inesdesantiago library ordered by importance.
  • Spatial mapping of splicing factor complexes involved in exon and intron definition
    J. Cell Biol., Vol. 181, No. 6. (16 June 2008), pp. 921-934.
    by Jonathan D Ellis, David Lleres, Marco Denegri, Angus I Lamond, Javier F Caceres
    posted to wide_mapping splicing spatial-organization genome-organization by inesdesantiago on 2008-09-18 14:42:55 as *****
  • Cell biology of transcription and pre-mRNA splicing: nuclear architecture meets nuclear function
    J Cell Sci, Vol. 113, No. 11. (1 June 2000), pp. 1841-1849.
    by T Misteli
    posted to splicing spatial-organization review by inesdesantiago on 2008-09-18 14:41:13 as *****
  • Alternative splicing and genome complexity.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 29-30.
    by D Brett, H Pospisil, J Valcárcel, J Reich, P Bork
    posted to splicing by inesdesantiago on 2008-09-18 14:38:47 as ***** along with 4 people and 1 group kaspermunch PunkRock antonkratz Ema Bioinformatics
  • Estimating rates of alternative splicing in mammals and invertebrates.
    Nature genetics, Vol. 36, No. 9. (September 2004)
    by H Kim, R Klein, J Majewski, J Ott
    posted to splicing review by inesdesantiago on 2008-09-18 14:36:42 as *****
  • A genomic view of alternative splicing.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 13-19.
    by B Modrek, C Lee
    posted to splicing review by inesdesantiago on 2008-09-18 14:34:34 as ***** along with 7 people and 3 groups setar Cortel balicea dalloliogm mirzazadeh antonkratz srp33 Web2 splicing yeast
  • Alternative splicing and RNA selection pressure — evolutionary consequences for eukaryotic genomes
    Nature Reviews Genetics, Vol. 7, No. 7. (13 June 2006), pp. 499-509.
    by Yi Xing, Christopher Lee
    posted to splicing review by inesdesantiago on 2008-09-18 14:33:33 as ***** along with 4 people and 2 groups eoghanharr jwestbrook paulcartwright pradiptaray King_Lab BergmanLab
  • Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.
    Mol Biol Evol, Vol. 22, No. 11. (November 2005), pp. 2198-2208.
    by BP Cusack, KH Wolfe
    posted to splicing by inesdesantiago on 2008-09-18 14:31:33 as ***** along with 3 people Cortel radek hpaces
  • Origin and evolution of new exons in rodents
    Genome Res., Vol. 15, No. 9. (1 September 2005), pp. 1258-1264.
    by Wen Wang, Hongkun Zheng, Shuang Yang, Haijing Yu, Jun Li, Huifeng Jiang, Jianning Su, Lei Yang, Jianguo Zhang, Jason Mcdermott, Ram Samudrala, Jian Wang, Huanming Yang, Jun Yu, Karsten Kristiansen, Gane K Wong, Jun Wang
    posted to splicing review by inesdesantiago on 2008-09-18 14:30:34 as ***** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 177-180.
    by B Modrek, CJ Lee
    posted to splicing by inesdesantiago on 2008-09-18 14:28:21 as ***** along with 2 people radek frohike
  • Changes in chromosome organization during PHA-activation of resting human lymphocytes measured by cryo-FISH.
    Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, Vol. 16, No. 3. (2008), pp. 413-426.
    by MR Branco, T Branco, F Ramirez, A Pombo
    posted to spatial-organization by inesdesantiago on 2008-08-05 15:08:51 as ***** along with 1 person klo
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D D Storey, Iliana Avila-Campillo, Mark J J Kruger, Jason M M Johnson, Carol A A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A A Drake, Aldons J J Lusis, Ryan C C Smith, F Peter P Guengerich, Stephen C C Strom, Erin Schuetz, Thomas H H Rushmore, Roger Ulrich
    posted to integration transcription by inesdesantiago on 2008-08-05 10:23:23 as ***** along with 9 people semrich ddunbar caseybrown vplagnol Schmidtc ptrobajo Jonesy jyuh hdopazo
  • Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
    Nature, Vol. 453, No. 7194. (22 May 2008), pp. 544-547.
    by Hannah H Chang, Martin Hemberg, Mauricio Barahona, Donald E Ingber, Sui Huang
    posted to transcription by inesdesantiago on 2008-08-05 10:01:00 as ***** along with 1 person megraw
  • Differential H3K4 Methylation Identifies Developmentally Poised Hematopoietic Genes
    Developmental Cell, Vol. 14, No. 5. (13 May 2008), pp. 798-809.
    by Keith Orford, Peter Kharchenko, Weil Lai, Maria C Dao, David J Worhunsky, Adam Ferro, Viktor Janzen, Peter J Park, David T Scadden
    posted to modifications wide_mapping by inesdesantiago on 2008-08-05 09:50:59 as *****
  • Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions.
    Genome research (25 April 2008)
    by Mahesh Yaragatti, Claudio Basilico, Lisa Dailey
    posted to genome-organization integration modifications nucleosome-positioning by inesdesantiago on 2008-08-04 18:58:22 as ***** along with 2 people djkt maximilianh
  • Finding noncoding RNA transcripts from low abundance expressed sequence tags
    Cell Res, Vol. 18, No. 6. (0000), pp. 695-700.
    by Chenghai Xue, Fei Li, Fei Li
    posted to integration rna by inesdesantiago on 2008-08-04 18:55:27 as *****
  • Genetic and epigenetic regulation in nuclear microenvironments for biological control in cancer.
    Journal of cellular biochemistry, Vol. 104, No. 6. (15 August 2008), pp. 2016-2026.
    by GS Stein, SK Zaidi, JL Stein, JB Lian, AJ van Wijnen, M Montecino, DW Young, A Javed, J Pratap, JY Choi, SA Ali, S Pande, MQ Hassan
    posted to review spatial-organization by inesdesantiago on 2008-08-04 18:28:46 as *****
  • Phenotypic transcription factors epigenetically mediate cell growth control.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 18. (6 May 2008), pp. 6632-6637.
    by SA Ali, SK Zaidi, CS Dacwag, N Salma, DW Young, AR Shakoori, MA Montecino, JB Lian, AJ van Wijnen, AN Imbalzano, GS Stein, JL Stein
    posted to rna transcription by inesdesantiago on 2008-08-04 18:27:20 as *****
  • Defining genetic interaction
    Proceedings of the National Academy of Sciences, Vol. 105, No. 9. (4 March 2008), pp. 3461-3466.
    by Ramamurthy Mani, St, John L Hartman, Guri Giaever, Frederick P Roth
    posted to review spatial-organization by inesdesantiago on 2008-08-04 18:22:54 as ***** along with 4 people tmmurali caseybrown jyuh carlk
  • Genome-wide RNA polymerase II: not genes only!
    Trends in Biochemical Sciences, Vol. 33, No. 6. (June 2008), pp. 265-273.
    by Frederic Koch, Frederic Jourquin, Pierre Ferrier, Jean-Christophe Andrau
    posted to polymerase review wide_mapping by inesdesantiago on 2008-08-04 17:50:36 as *****
  • Incorporation of histone deacetylase inhibition into the structure of a nuclear receptor agonist.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 24. (17 June 2008), pp. 8250-8255.
    by LE Tavera-Mendoza, TD Quach, B Dabbas, J Hudon, X Liao, A Palijan, JL Gleason, JH White
    posted to modifications by inesdesantiago on 2008-08-04 17:36:22 as *****
  • Splicing and dicing with a SERRATEd edge.
    Proceedings of the National Academy of Sciences of the United States of America (16 June 2008)
    by Taiowa A A Montgomery, James C C Carrington
    posted to polymerase review rna transcription by inesdesantiago on 2008-08-04 17:19:23 as ***** along with 1 person bootsy
  • A PASport to Cellular Proliferation
    Cell, Vol. 134, No. 2. (25 July 2008), pp. 208-210.
    by Eitan Zlotorynski, Reuven Agami
    posted to review rna transcription by inesdesantiago on 2008-08-04 14:01:35 as *****
  • SIRT1 Is a Circadian Deacetylase for Core Clock Components
    Cell, Vol. 134, No. 2. (25 July 2008), pp. 212-214.
    by William J Belden, Jay C Dunlap
    posted to modifications review by inesdesantiago on 2008-08-04 13:59:12 as ***** along with 1 person yuchi84119
  • The Insulator Binding Protein CTCF Positions 20 Nucleosomes around Its Binding Sites across the Human Genome
    PLoS Genet, Vol. 4, No. 7. (25 July 2008), e1000138.
    by Yutao Fu, Manisha Sinha, Craig L Peterson, Zhiping Weng
    posted to cohesin integration nucleosome-positioning wide_mapping by inesdesantiago on 2008-08-04 13:45:32 as ***** along with 2 people djkt clearbluespring
  • GeneTrack--a genomic data processing and visualization framework
    Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1305-1306.
    by Istvan Albert, Shinichiro Wachi, Cizhong Jiang, Franklin B Pugh
    posted to software by inesdesantiago on 2008-07-24 16:58:19 as ***** along with 3 people zhouyu wisdom_love jyuh
  • Stem cell transcriptome profiling via massive-scale mRNA sequencing.
    Nature methods (30 May 2008)
    by Nicole Cloonan, Alistair R R R Forrest, Gabriel Kolle, Brooke B A B Gardiner, Geoffrey J J Faulkner, Mellissa K K Brown, Darrin F F Taylor, Anita L L Steptoe, Shivangi Wani, Graeme Bethel, Alan J J Robertson, Andrew C C Perkins, Stephen J J Bruce, Clarence C C Lee, Swati S S Ranade, Heather E E Peckham, Jonathan M M Manning, Kevin J J McKernan, Sean M M Grimmond
    posted to proteome by inesdesantiago on 2008-07-24 16:55:58 as ***** along with 7 people umit myourshaw megraw GeeSharpMinor caseybrown jyuh gdb
  • Molecular profiling of stem cells.
    Clinica chimica acta; international journal of clinical chemistry, Vol. 378, No. 1-2. (March 2007), pp. 24-32.
    by L Ma, B Sun, L Hood, Q Tian
    posted to proteome review transcription by inesdesantiago on 2008-07-24 16:29:27 as *****
  • Multivariate proteomic analysis of murine embryonic stem cell self-renewal versus differentiation signaling
    Proceedings of the National Academy of Sciences, Vol. 101, No. 9. (2 March 2004), pp. 2900-2905.
    by Wendy Prudhomme, George Q Daley, Peter Zandstra, Douglas A Lauffenburger
    posted to integration proteome by inesdesantiago on 2008-07-24 16:26:30 as ***** along with 2 people faisalm MllePapillon
  • Integrated Genomic and Proteomic Analyses of Gene Expression in Mammalian Cells
    Mol Cell Proteomics, Vol. 3, No. 10. (1 October 2004), pp. 960-969.
    by Qiang Tian, Serguei B Stepaniants, Mao Mao, Lee Weng, Megan C Feetham, Michelle J Doyle, Eugene C Yi, Hongyue Dai, Vesteinn Thorsson, Jimmy Eng, David Goodlett, Joel P Berger, Bert Gunter, Peter S Linseley, Roland B Stoughton, Ruedi Aebersold, Steven J Collins, William A Hanlon, Leroy E Hood
    posted to integration proteome by inesdesantiago on 2008-07-24 16:17:33 as *****
  • Chromatin in pluripotent embryonic stem cells and differentiation
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 7. (17 May 2006), pp. 540-546.
    by Eran Meshorer, Tom Misteli
    posted to modifications review spatial-organization transcription by inesdesantiago on 2008-07-24 16:13:02 as *****
  • Oct4 Targets Regulatory Nodes to Modulate Stem Cell Function
    PLoS ONE, Vol. 2, No. 6. (20 June 2007), e553.
    by Pearl A Campbell, Carolina Perez-Iratxeta, Miguel A Andrade-Navarro, Michael A Rudnicki
    posted to diff-selfrenewal by inesdesantiago on 2008-07-24 15:59:25 as ***** along with 1 person MllePapillon
  • Isochores Merit the Prefix 'Iso'
    Genome Biology, Vol. 3, No. 11. (2002), pp. preprint0009.1-preprint0009.15.
    by Wentian Li, Pedro B Galvan, Pedro Carpena, Jose Oliver
    posted to isochores by inesdesantiago on 2008-07-24 15:50:02 as *****
  • A Short Genome Primer
    Comparative Genomics (5 June 2005), pp. 5-11.
    by Cmels Directorate
    edited by Lawrence
    posted to genome-organization by inesdesantiago on 2008-07-24 15:44:03 as *****
  • Replication-timing-correlated spatial chromatin arrangements in cancer and in primate interphase nuclei
    J Cell Sci, Vol. 121, No. 11. (1 June 2008), pp. 1876-1886.
    by Florian Grasser, Michaela Neusser, Heike Fiegler, Tobias Thormeyer, Marion Cremer, Nigel P Carter, Thomas Cremer, Stefan Muller
    posted to replication spatial-organization by inesdesantiago on 2008-07-24 15:03:39 as *****
  • Dissecting the logical types of network control in gene expression profiles.
    BMC systems biology, Vol. 2 (2008)
    by C Marr, M Geertz, MT Hütt, G Muskhelishvili
    posted to genome-organization by inesdesantiago on 2008-07-24 15:01:20 as *****
  • The three-dimensional structure of human interphase chromosomes is related to the transcriptome map.
    Molecular and cellular biology, Vol. 27, No. 12. (June 2007), pp. 4475-4487.
    by S Goetze, J Mateos-Langerak, HJ Gierman, W de Leeuw, O Giromus, MH Indemans, J Koster, V Ondrej, R Versteeg, R van Driel
    posted to paper08 spatial-organization by inesdesantiago on 2008-07-24 14:54:20 as *****
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to transcription wide_mapping by inesdesantiago on 2008-07-24 14:52:36 as ***** along with 4 people jjray caseybrown kengg gdb
  • Genome-scale DNA methylation maps of pluripotent and differentiated cells
    Nature (06 July 2008)
    by Alexander Meissner, Tarjei S Mikkelsen, Hongcang Gu, Marius Wernig, Jacob Hanna, Andrey Sivachenko, Xiaolan Zhang, Bradley E Bernstein, Chad Nusbaum, David B Jaffe, Andreas Gnirke, Rudolf Jaenisch, Eric S Lander
    posted to methylation wide_mapping by inesdesantiago on 2008-07-24 14:43:51 as ***** along with 5 people and 1 group mrochman gdb jasonflannick djkt wsjames Oxford Virology
  • A chromatin landmark and transcription initiation at most promoters in human cells.
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88.
    by MG Guenther, SS Levine, LA Boyer, R Jaenisch, RA Young
    posted to polymerase modifications wide_mapping by inesdesantiago on 2008-07-24 14:35:27 as ***** along with 1 person margaritis
  • Gene dynamics and nuclear architecture during differentiation
    Differentiation, Vol. 76, No. 1. (January 2008), pp. 41-56.
    by Schofer, Christian, Weipoltshammer, Klara
    posted to review spatial-organization by inesdesantiago on 2008-07-24 14:33:07 as *****
  • The complexity of the mammalian transcriptome
    The Journal of Physiology, Vol. 575, No. 2. (September 2006), pp. 321-332.
    by Gustincich, Stefano, Sandelin, Albin, Plessy, Charles, Katayama, Shintaro, Simone, Roberto, Lazarevic, Dejan, Hayashizaki, Yoshihide, Carninci, Piero
    posted to review transcription by inesdesantiago on 2008-07-24 14:28:32 as *****
  • Gene activation and deactivation related changes in the three-dimensional structure of chromatin.
    Chromosoma, Vol. 114, No. 5. (November 2005), pp. 331-337.
    by E Wegel, P Shaw
    posted to review spatial-organization by inesdesantiago on 2008-07-24 14:25:15 as ***** along with 1 person and 3 groups PeterDAdamo Boydian_Society Nutritional_Polymorphisms The_Individualist
  • Dynamics and interplay of nuclear architecture, genome organization, and gene expression.
    Genes Dev, Vol. 21, No. 23. (1 December 2007), pp. 3027-3043.
    by R Schneider, R Grosschedl
    posted to genome-organization paper08 review spatial-organization by inesdesantiago on 2008-07-24 14:23:27 as ***** along with 2 people aswin sebastien_vigneau
  • Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 104-115.
    by Christian Lanctot, Thierry Cheutin, Marion Cremer, Giacomo Cavalli, Thomas Cremer
    posted to paper08 review spatial-organization by inesdesantiago on 2008-07-24 14:20:13 as ***** along with 7 people and 3 groups dchughes emilyhare margaritis tenpils massivemayhem mdimon echinotrix EisenLab G4ID Genetics-of-Gambling
  • Radial chromatin positioning is shaped by local gene density, not by gene expression.
    Chromosoma, Vol. 116, No. 3. (June 2007), pp. 285-306.
    by K Küpper, A Kölbl, D Biener, S Dittrich, J von Hase, T Thormeyer, H Fiegler, NP Carter, MR Speicher, T Cremer, M Cremer
    posted to paper08 spatial-organization by inesdesantiago on 2008-07-24 14:08:13 as *****
  • Domain-wide regulation of gene expression in the human genome
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1286-1295.
    by Hinco J Gierman, Mireille H Indemans, Jan Koster, Sandra Goetze, Jurgen Seppen, Dirk Geerts, Roel van Driel, Rogier Versteeg
    posted to genome-organization paper08 by inesdesantiago on 2008-07-24 14:05:06 as ***** along with 5 people and 2 groups dchughes djkt cjeans cabbagezs ljs G4ID Genetics-of-Gambling
  • Spatial genome organization in the formation of chromosomal translocations.
    Seminars in cancer biology, Vol. 17, No. 1. (February 2007), pp. 80-90.
    by KJ Meaburn, T Misteli, E Soutoglou
    posted to paper08 review spatial-organization by inesdesantiago on 2008-07-24 13:44:22 as *****
  • Spatial organization of the eukaryotic genome and the action of epigenetic mechanisms
    Russian Journal of Genetics, Vol. 42, No. 12. (December 2006), pp. 1353-1361.
    by Razin,
    posted to review spatial-organization by inesdesantiago on 2008-07-24 13:40:30 as *****
  • Developmentally-poised chromatin of embryonic stem cells.
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 1568-1577.
    by TP Rasmussen
    posted to modifications reprogramming review by inesdesantiago on 2008-07-24 13:38:18 as *****
  • Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
    Genome Res. (27 November 2007), gr.6654808.
    by Leah O Barrera, Zirong Li, Andrew D Smith, Karen C Arden, Webster K Cavenee, Michael Q Zhang, Roland D Green, Bing Ren
    posted to modifications wide_mapping polymerase by inesdesantiago on 2008-07-24 13:34:51 as ***** along with 2 people sameetmehta gracio
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