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j3xucite structure [41 articles]

Recent papers added to j3xucite library classified by the tag structure. You can also see everyone's structure.
  • Local protein structure prediction using discriminative models.
    BMC Bioinformatics, Vol. 7, No. 1. (11 January 2006)
    by Oliver Sander, Ingolf Sommer, Thomas Lengauer
    posted to local prediction structure by j3xucite on 2008-02-24 04:42:43 as ** along with 1 person chad_davis
  • P-SEA: a new efficient assignment of secondary structure from C alpha trace of proteins
    Comput. Appl. Biosci., Vol. 13, No. 3. (1 June 1997), pp. 291-295.
    by G Labesse, N Colloc'h, J Pothier, JP Mornon
    posted to protein structure by j3xucite on 2008-01-15 22:19:38 as ** along with 2 people thamelry wouterboomsma
  • SCOP: a structural classification of proteins database for the investigation of sequences and structures.
    J Mol Biol, Vol. 247, No. 4. (7 April 1995), pp. 536-540.
    by AG Murzin, SE Brenner, T Hubbard, C Chothia
    posted to protein structure by j3xucite on 2008-01-13 04:26:09 as ** along with 9 people dimka chrn chad_davis sriram_s aengisch massivemayhem cjeans siebertm sim82
  • TM-align: a protein structure alignment algorithm based on the TM-score.
    Nucleic Acids Res, Vol. 33, No. 7. (2005), pp. 2302-2309.
    by Y Zhang, J Skolnick
    posted to alignment structure by j3xucite on 2008-01-12 19:58:11 as ** along with 1 person aengisch
  • HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.
    J Mol Biol, Vol. 301, No. 1. (4 August 2000), pp. 173-190.
    by C Bystroff, V Thorsson, D Baker
    posted to protein structure by j3xucite on 2007-11-05 16:51:01 as ** along with 4 people and 1 group wouterboomsma dgront rabio wenhan MBLAB
  • Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.
    Journal Molecular Biology, Vol. 218, No. 1. (5 March 1991), pp. 183-194.
    by L Holm, C Sander
    posted to protein structure by j3xucite on 2007-11-02 17:45:28 as ** along with 3 people and 2 groups jwm wouterboomsma dgront Radiation_Damage Stressosome
  • PISCES: a protein sequence culling server.
    Bioinformatics, Vol. 19, No. 12. (12 August 2003), pp. 1589-1591.
    by G Wang, RL Dunbrack
    posted to protein structure by j3xucite on 2007-11-02 17:43:43 as ** along with 8 people and 2 groups barry aalibes kaarsinogen dgront blackbart mloewer ezralanglois chgjb structural_bioinformatics Bioinformatics
  • SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace.
    Nucleic Acids Research, Vol. 34, No. Web Server issue. (1 July 2006)
    by J Maupetit, R Gautier, P Tufféry
    posted to protein structure by j3xucite on 2007-11-02 17:41:16 as **
  • Small libraries of protein fragments model native protein structures accurately.
    Journal of Molecular Biology, Vol. 323, No. 2. (18 October 2002), pp. 297-307.
    by R Kolodny, P Koehl, L Guibas, M Levitt
    posted to protein structure by j3xucite on 2007-11-02 17:37:44 as ** along with 3 people and 2 groups ana barry eckart_bindewald structural_bioinformatics Bioinformatics
  • The PSIPRED protein structure prediction server
    Bioinformatics, Vol. 16, No. 4. (1 April 2000), pp. 404-405.
    by Liam J Mcguffin, Kevin Bryson, David T Jones
    posted to prediction protein structure by j3xucite on 2007-11-02 17:33:42 as ** along with 2 people RandyRR granujilla
  • Modelling the polypeptide backbone with 'spare parts' from known protein structures
    Protein Eng., Vol. 2, No. 5. (1 January 1989), pp. 335-345.
    by Michel Claessens, Eric van Cutsem, Ignace Lasters, Shoshana Wodak
    posted to protein structure by j3xucite on 2007-10-31 21:36:06 as ** along with 1 person dgront
  • Using known substructures in protein model building and crystallography.
    EMBO Journal, Vol. 5 (1986), pp. 819-823.
    by TA Jones, S Thirup
    posted to protein structure by j3xucite on 2007-10-31 21:33:29 as **
  • Dependency between consecutive local conformations helps assemble protein structures from secondary structures using Go potential and greedy algorithm
    Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4., pp. 732-740.
    by Pierre Tuffery, Philippe Derreumaux
    posted to prediction protein structure by j3xucite on 2007-10-31 21:08:24 as ** along with 1 person thamelry
  • "Pinning strategy": a novel approach for predicting the backbone structure in terms of protein blocks from sequence.
    J Biosci, Vol. 32, No. 1. (January 2007), pp. 51-70.
    by AG De Brevern, C Etchebest, C Benros, S Hazout
    posted to prediction protein structure by j3xucite on 2007-10-01 15:50:53 as ** along with 1 person wouterboomsma
  • A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.
    Curr Opin Struct Biol (3 June 2005)
    by John Moult
    posted to prediction protein structure by j3xucite on 2007-09-13 22:15:12 as ** along with 9 people and 2 groups ujh nigham thaliana warlock6x3 marcius ffranca dgront granujilla mingzhi BioinfoCIPF SGU-CIPF
  • Critical assessment of methods of protein structure prediction (CASP)--round 6.
    Proteins, Vol. 61 Suppl 7 (2005), pp. 3-7.
    by J Moult, K Fidelis, B Rost, T Hubbard, A Tramontano
    posted to prediction protein structure by j3xucite on 2007-09-13 22:13:47 as ** along with 4 people dgront aengisch schuylrp saunders
  • Critical assessment of methods of protein structure prediction (CASP)-round V
    Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 334-339.
    by John Moult, Krzysztof Fidelis, Adam Zemla, Tim Hubbard
    posted to prediction protein structure by j3xucite on 2007-09-13 22:13:21 as **
  • The structural alignment between two proteins: is there a unique answer?
    Protein Sci, Vol. 5, No. 7. (July 1996), pp. 1325-1338.
    by A Godzik
    posted to structure alignment by j3xucite on 2007-02-07 20:52:57 as ** along with 3 people and 2 groups ana rabio Inchoate structural_bioinformatics Bioinformatics
  • Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller
    Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 534-541.
    by Björn Wallner, Huisheng Fang, Arne Elofsson
    posted to structure prediction by j3xucite on 2007-02-01 22:13:22 as **
  • A tree-decomposition approach to protein structure prediction.
    Proc IEEE Comput Syst Bioinform Conf (2005), pp. 247-256.
    by J Xu, F Jiao, B Berger
    posted to prediction structure tree-decomposition by j3xucite on 2006-07-04 04:53:21 as ** along with 1 person carlk
  • Can correct protein models be identified?
    Protein Sci, Vol. 12, No. 5. (May 2003), pp. 1073-1086.
    by B Wallner, A Elofsson
    posted to prediction structure by j3xucite on 2006-07-04 03:30:21 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • The protein structure prediction problem could be solved using the current PDB library.
    Proceedings of National Academy Sciences, USA, Vol. 102, No. 4. (25 January 2005), pp. 1029-1034.
    by Y Zhang, J Skolnick
    posted to analysis protein structure by j3xucite on 2006-06-26 02:55:04 as ** along with 9 people and 3 groups karbak iakes vavi marcius alexg kracher schuylrp jfmuggs neils BioinfoCIPF Immunoinformatics SGU-CIPF
  • The PDB is a covering set of small protein structures.
    J Mol Biol, Vol. 334, No. 4. (5 December 2003), pp. 793-802.
    by D Kihara, J Skolnick
    posted to analysis protein structure by j3xucite on 2006-06-26 02:48:42 as ** along with 2 people and 2 groups iakes marcius BioinfoCIPF SGU-CIPF
  • Multi-scale hierarchical structure prediction of helical transmembrane proteins.
    Proc IEEE Comput Syst Bioinform Conf (2005), pp. 203-207.
    by Z Chen, Y Xu
    posted to membrane prediction protein structure by j3xucite on 2006-06-26 00:30:18 as **
  • Automated structure prediction of weakly homologous proteins on a genomic scale
    PNAS, Vol. 101, No. 20. (18 May 2004), pp. 7594-7599.
    by Yang Zhang, Jeffrey Skolnick
    posted to prediction structure by j3xucite on 2006-06-09 20:25:17 as ** along with 3 people nigham wouterboomsma mirzazadeh
  • Identification of correct regions in protein models using structural, alignment, and consensus information -- Wallner and Elofsson 15 (4): 900 -- Protein Science
    posted to prediction protein structure by j3xucite on 2006-06-02 19:57:48 as **
  • A global representation of the protein fold space.
    Proc Natl Acad Sci U S A, Vol. 100, No. 5. (4 March 2003), pp. 2386-2390.
    by J Hou, GE Sims, C Zhang, SH Kim
    posted to analysis protein structure by j3xucite on 2006-05-25 21:40:35 as ** along with 3 people and 2 groups ana iakes tny structural_bioinformatics Bioinformatics
  • Connecting the Protein Structure Universe by Using Sparse Recurring Fragments
    Structure, Vol. 13, No. 8. (August 2005), pp. 1213-1224.
    by Iddo Friedberg, Adam Godzik
    posted to analysis protein structure by j3xucite on 2006-05-25 19:35:08 as ** along with 1 person iakes
  • RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space.
    Nucleic Acids Res, Vol. 31, No. 16. (15 August 2003), pp. 4755-4761.
    by CM Duarte, LM Wadley, AM Pyle
    posted to analysis rna structure by j3xucite on 2006-05-23 04:03:44 as ** along with 3 people and 3 groups marcius condon emidio_capriotti beta BioinfoCIPF SGU-CIPF
  • Algorithmic Aspects of Protein Structure Similarity
    FOCS, Vol. 00 (1999), 512.
    by Deborah Goldman, Sorin Istrail, Christos H Papadimitriou
    posted to protein similarity structure by j3xucite on 2006-05-22 03:40:40 as **
  • Local feature frequency profile: a method to measure structural similarity in proteins.
    Proc Natl Acad Sci U S A, Vol. 101, No. 11. (16 March 2004), pp. 3797-3802.
    by IG Choi, J Kwon, SH Kim
    posted to classification protein structure by j3xucite on 2006-05-10 17:38:23 as ** along with 1 person rabio
  • secondary structure spatial conformation footprint: A novel method for fast protein structure comparison and classification
    BMC Structrual Biology
    by Elena Zotenko, Dianne P O'Leary, Teresa M Przytycka
    posted to classification protein structure by j3xucite on 2006-05-10 17:36:41 as **
  • ecognition of Binding Patterns Common to a Set of Protein Structures
    Vol. 3500 (2005), pp. 440-455.
    by M Shatsky, A Shulman-Peleg, R Nussinov, HJ Wolfson
    posted to motif structure by j3xucite on 2006-04-09 03:01:08 as **
  • A method for simultaneous alignment of multiple protein structures.
    Proteins, Vol. 56, No. 1. (1 July 2004), pp. 143-156.
    by M Shatsky, R Nussinov, HJ Wolfson
    posted to alignment multiple structure by j3xucite on 2006-03-10 04:37:33 as ** along with 4 people nachtalp analogAI carlescorbi kgutwin
  • Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.
    J Mol Biol, Vol. 345, No. 5. (4 February 2005), pp. 1281-1294.
    by O Keskin, B Ma, R Nussinov
    posted to interaction motif structure by j3xucite on 2006-03-08 22:01:11 as ** along with 8 people and 2 groups mdimmic ana barry baaden okarsligil bicko bilab xz structural_bioinformatics Bioinformatics
  • A Parameterized Algorithm for Protein Structure Alignment
    (April 2006)
    by Jinbo Xu, Feng Jiao, Bonnie Berger
    posted to alignment ptas structure by j3xucite on 2006-03-05 04:24:29 as **
  • Protein backbone angle restraints from searching a database for chemical shift and sequence homology.
    J Biomol NMR, Vol. 13, No. 3. (March 1999), pp. 289-302.
    by G Cornilescu, F Delaglio, A Bax
    posted to chemical prediction secondary shift structure by j3xucite on 2006-03-05 03:10:15 as ** along with 1 person laurabailey
  • De novo protein structure determination using sparse NMR data.
    J Biomol NMR, Vol. 18, No. 4. (December 2000), pp. 311-318.
    by PM Bowers, CE Strauss, D Baker
    posted to de determination nmr novo structure by j3xucite on 2006-03-04 21:13:11 as ** along with 1 person dgront
  • A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones.
    J Am Chem Soc, Vol. 123, No. 47. (28 November 2001), pp. 11791-11796.
    by F Tian, H Valafar, JH Prestegard
    posted to assignment determination rdc simultaneous structure by j3xucite on 2006-03-04 21:09:55 as **
  • An algebraic geometry approach to protein structure determination from NMR data.
    Proc IEEE Comput Syst Bioinform Conf (2005), pp. 235-246.
    by L Wang, RR Mettu, BR Donald
    posted to determination nmr structure by j3xucite on 2006-03-04 20:49:37 as **
  • Analysis of a systematic search-based algorithm for determining protein backbone structure from a minimum number of residual dipolar couplings.
    Proc IEEE Comput Syst Bioinform Conf (2004), pp. 319-330.
    by L Wang, BR Donald
    posted to determination protein rdc structure wang by j3xucite on 2006-03-04 20:46:38 as **
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