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jfr Lewis [12 articles]

Recent papers posted to jfr library by the author Lewis. You can also see Lewis everyone.
  • Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
    Nat Biotech, Vol. 26, No. 8. (2008), pp. 889-896.
    by Chris F Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R Brinkman, Michael, Eric W Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M Hancock, Nigel W Hardy, Henning Hermjakob, Randall K Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas L Novere, Jim Leebens-Mack, Suzanna E Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth Mcnally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M Reecy, Donald G Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H Scheuermann, Daniel Schober, Barry Smith, Jason Snape, Christian J Stoeckert, Keith Tipton, Peter Sterk, Andreas Untergasser, Jo Vandesompele, Stefan Wiemann
    posted to standards reproducible_research by jfr on 2008-10-08 14:49:47 as ** along with 9 people and 1 group shikin jyuh jandot dullhunk GeeSharpMinor ChrisEvelo lenov fgibson renatomilani GelML
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to software proteomics annotation by jfr on 2008-09-05 13:35:59 as ** along with 17 people and 1 group yas AlexanderPico thomaskelder dullhunk tharris renatomilani neils chad_davis fpattyn sjc Katje jamselem ChrisEvelo carlk jyuh xingxu rholz microbiology_nijmegen
  • Prediction of mammalian microRNA targets.
    Cell, Vol. 115, No. 7. (26 December 2003), pp. 787-798.
    by BP Lewis, IH Shih, MW Jones-Rhoades, DP Bartel, CB Burge
    posted to mirna_target by jfr on 2008-09-04 10:27:25 as read along with 8 people and 2 groups giovenko maryee eckart_bindewald mortenlindow kt arcticrasta mtagaya akiezun Bioinformatics microRNA
  • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.
    Cell, Vol. 120, No. 1. (14 January 2005), pp. 15-20.
    by BP Lewis, CB Burge, DP Bartel
    posted to mirna_target by jfr on 2008-09-04 10:17:32 as read along with 11 people and 3 groups pengchy marcius maryee eckart_bindewald tardigrade mortenlindow andersbj mtagaya heliopais Alexander_Kanitz elfar microRNA BioinfoCIPF SGU-CIPF
  • The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution.
    Science (24 November 2005)
    by Kyle Kai-How K Farh, Andrew Grimson, Calvin Jan, Benjamin P P Lewis, Wendy K K Johnston, Lee P P Lim, Christopher B B Burge, David P P Bartel
    posted to mirna by jfr on 2008-08-05 17:41:54 as read along with 14 people and 4 groups jerlich mfenner aprasad dayjm marcius eckart_bindewald dpollard mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz caseybrown EisenLab microRNA BioinfoCIPF SGU-CIPF
  • The minimum information about a genome sequence (MIGS) specification
    Nat Biotech, Vol. 26, No. 5. (May 2008), pp. 541-547.
    by Dawn Field, George Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J Allen, Samuel V Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Claude Depamphilis, Robert Edwards, Nadeem Faruque, Robert Feldman, Jack Gilbert, Paul Gilna, Frank O Glockner, Philip Goldstein, Robert Guralnick, Dan Haft, David Hancock, Henning Hermjakob, Christiane Hertz-Fowler, Phil Hugenholtz, Ian Joint, Leonid Kagan, Matthew Kane, Jessie Kennedy, George Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos Kyrpides, Jim Leebens-Mack, Suzanna E Lewis, Kelvin Li, Allyson L Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer Martiny, Barbara Methe, Ilene Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita Proctor, Owen White, Susanna-Assunta Sansone, Andrew Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah Turner, David Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth Wilson, Anil Wipat
    posted to genomics sequencing standards by jfr on 2008-06-27 11:22:35 as * along with 7 people allysonlister jmeppley dullhunk jyuh tharris jamselem neils
  • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1251-1255.
    by Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, Suzanna Lewis
    posted to integration software standards by jfr on 2008-01-23 15:34:48 as * along with 14 people and 2 groups tmmurali dullhunk jandot cjeans leechuck sgoetz PunkRock sobolevnrm lenov AlexanderPico dansullivanblk dagmar marck fgibson baker-group csb_journal_club_public
  • Reactome: a knowledgebase of biological pathways and processes
    Genome Biology, Vol. 8 (16 March 2007), R39.
    by Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Geeta Joshi-Tope, Gopal Gopinath, David Croft, Bernard de Bono, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein
    posted to bioinformatics pathway_analysis by jfr on 2007-07-31 16:29:35 as ** along with 6 people jyuh dragonrez balajis raiyar toshiaki_katayama AlexanderPico
  • A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies.
    PLoS Med, Vol. 3, No. 12. (December 2006)
    by DS Shames, L Girard, B Gao, M Sato, CM Lewis, N Shivapurkar, A Jiang, CM Perou, YH Kim, JR Pollack, KM Fong, CL Lam, M Wong, Y Shyr, R Nanda, OI Olopade, W Gerald, DM Euhus, JW Shay, AF Gazdar, JD Minna
    posted to methylation by jfr on 2007-05-10 16:56:30 as ** along with 2 people epigenetics blackm0k
  • Classification and subtype prediction of adult soft tissue sarcoma by functional genomics.
    Am J Pathol, Vol. 163, No. 2. (August 2003), pp. 691-700.
    by NH Segal, P Pavlidis, CR Antonescu, RG Maki, WS Noble, D DeSantis, JM Woodruff, JJ Lewis, MF Brennan, AN Houghton, C Cordon-Cardo
    posted to classification by jfr on 2007-02-14 15:16:22 as read
  • EGASP: the human ENCODE Genome Annotation Assessment Project.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde, F Denoeud, S Antonarakis, M Ashburner, VB Bajic, E Birney, R Castelo, E Eyras, C Ucla, TR Gingeras, J Harrow, T Hubbard, SE Lewis, MG Reese
    posted to annotation genomics by jfr on 2006-11-08 10:04:57 as ** along with 3 people and 2 groups indigoviolet wenhan timhubbard Bioinformatics EisenLab
  • Modelling data across labs, genomes, space and time
    Nature Cell Biology, Vol. 8, No. 11., pp. 1190-1194.
    by Jason R Swedlow, Suzanna E Lewis, Ilya G Goldberg
    posted to standards by jfr on 2006-11-07 13:53:01 as ** along with 4 people and 1 group glyg MrData scienbox shikin GeneGo
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