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jfr classification [142 articles]

Recent papers added to jfr library classified by the tag classification. You can also see everyone's classification.
  • Molecular signatures predict outcomes of breast cancer.
    The New England journal of medicine, Vol. 355, No. 6. (10 August 2006), pp. 615-617.
    by JA O'Shaughnessy
    posted to comparison comment classification breast_cancer by jfr on 2008-07-23 10:01:32 as read
  • Linking oncogenic pathways with therapeutic opportunities
    Nature Reviews Cancer, Vol. 6, No. 9. (17 August 2006), pp. 735-741.
    by Andrea H Bild, Anil Potti, Joseph R Nevins
    posted to therapy review pathway_analysis classification bio_signature by jfr on 2008-07-22 10:21:29 as read along with 4 people srp33 aviad_work jackjackjjj frohike
  • Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
    BMC Genomics, Vol. 9 (22 May 2008), 239.
    by Sherene Loi, Benjamin Haibe-Kains, Christine Desmedt, Pratyaksha Wirapati, Francoise Lallemand, Andrew M Tutt, Cheryl Gillet, Paul Ellis, Kenneth Ryder, James Reid, Maria G Daidone, Marco A Pierotti, Els MJJ Berns, Maurice PHM Jansen, John A Foekens, Mauro Delorenzi, Gianluca Bontempi, Martine J Piccart, Christos Sotiriou
    posted to tamoxifen jfrbib classification breast_cancer by jfr on 2008-06-09 12:41:38 as read
  • Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer.
    JAMA : the journal of the American Medical Association, Vol. 299, No. 13. (2 April 2008), pp. 1574-1587.
    by CR Acharya, DS Hsu, CK Anders, A Anguiano, KH Salter, KS Walters, RC Redman, SA Tuchman, CA Moylan, S Mukherjee, WT Barry, HK Dressman, GS Ginsburg, KP Marcom, KS Garman, GH Lyman, JR Nevins, A Potti
    posted to therapy gene_expression classification breast_cancer bio_signature by jfr on 2008-05-16 10:17:02 as read along with 1 person jyuh
  • Prognosis of stage II colon cancer by non-neoplastic mucosa gene expression profiling
    Oncogene, Vol. aop, No. current.
    by A Barrier, F Roser, PY Boëlle, B Franc, C Tse, D Brault, F Lacaine, S Houry, P Callard, C Penna, B Debuire, A Flahault, S Dudoit, A Lemoine
    posted to stageii gene_expression colon_cancer classification by jfr on 2008-05-04 23:49:23 as read
  • Machine learning methods for predictive proteomics.
    Brief Bioinform (29 February 2008)
    by Annalisa Barla, Giuseppe Jurman, Samantha Riccadonna, Stefano Merler, Marco Chierici, Cesare Furlanello
    posted to review proteomics machine_learning classification by jfr on 2008-05-04 23:47:30 as ** along with 2 people neils phoenixzxl
  • Gene expression profiling of nonneoplastic mucosa may predict clinical outcome of colon cancer patients.
    Diseases of the colon and rectum, Vol. 48, No. 12. (December 2005), pp. 2238-2248.
    by A Barrier, PY Boelle, A Lemoine, C Tse, D Brault, F Chiappini, F Lacaine, S Houry, M Huguier, A Flahault, S Dudoit
    posted to stageii gene_expression colon_cancer classification by jfr on 2008-05-04 22:20:51 as read
  • Integrating microarray and proteomics data to predict the response on cetuximab in patients with rectal cancer.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 166-177.
    by A Daemen, O Gevaert, T De Bie, A Debucquoy, JP Machiels, B De Moor, K Haustermans
    posted to proteomics methodology integration gene_expression classification by jfr on 2008-04-30 16:51:31 as **
  • SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ramon D Uriarte
    posted to survival_analysis software feature_selection classification by jfr on 2008-04-28 14:52:29 as ** along with 4 people jyuh aalibes chad_davis frohike
  • Decorrelation of the true and estimated classifier errors in high-dimensional settings.
    EURASIP journal on bioinformatics & systems biology (2007)
    by B Hanczar, J Hua, ER Dougherty
    posted to methodology evaluation classification by jfr on 2008-04-23 15:39:43 as **
  • Clinical application of the 70-gene profile: the MINDACT trial.
    Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 26, No. 5. (10 February 2008), pp. 729-735.
    by F Cardoso, L Van't Veer, E Rutgers, S Loi, S Mook, MJ Piccart-Gebhart
    posted to breast_cancer classification prognosis trial by jfr on 2008-04-22 08:45:00 as ***
  • Interlaboratory evaluation of genomic signatures for predicting carcinogenicity in the rat.
    Toxicological sciences : an official journal of the Society of Toxicology, Vol. 103, No. 1. (May 2008), pp. 28-34.
    by MR Fielden, A Nie, M McMillian, CS Elangbam, BA Trela, Y Yang, RT Dunn, Y Dragan, R Fransson-Stehen, M Bogdanffy, SP Adams, WR Foster, SJ Chen, P Rossi, P Kasper, D Jacobson-Kram, KS Tatsuoka, PJ Wier, J Gollub, DN Halbert, A Roter, JK Young, JF Sina, J Marlowe, HJ Martus, J Aubrecht, AJ Olaharski, N Roome, P Nioi, I Pardo, R Snyder, R Perry, P Lord, W Mattes, BD Car, ,
    posted to classification evaluation inter-laboratory platform_comparison reproducible_research by jfr on 2008-04-22 08:27:34 as **
  • Novel blood-based, five-gene biomarker set for the detection of colorectal cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 2. (15 January 2008), pp. 455-460.
    by M Han, CT Liew, HW Zhang, S Chao, R Zheng, KT Yip, ZY Song, HM Li, XP Geng, LX Zhu, JJ Lin, KW Marshall, CC Liew
    posted to classification colon_cancer diagnostic gene_expression by jfr on 2008-04-21 09:26:30 as **
  • A new method for class prediction based on signed-rank algorithms applied to Affymetrix(R) microarray experiments
    BMC Bioinformatics, Vol. 9 (11 January 2008), 16.
    by Thierry Reme, Dirk Hose, John De Vos, Aurelien Vassal, Pierre-Olivier Poulain, Veronique Pantesco, Hartmut Goldschmidt, Bernard Klein
    posted to classification methodology by jfr on 2008-04-18 14:22:25 as **
  • Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data.
    Comput Biol Chem, Vol. 31, No. 1. (February 2007), pp. 48-56.
    by Zhenqiang Su, Huixiao Hong, Roger Perkins, Xueguang Shao, Wensheng Cai, Weida Tong
    posted to classification feature_selection methodology by jfr on 2008-04-16 15:55:25 as ** along with 1 person shigepong
  • Molecular signatures of neoadjuvant endocrine therapy for breast cancer: characteristics of response or intrinsic resistance.
    Breast cancer research and treatment (9 March 2008)
    by Djuana M Harvell, Nicole S Spoelstra, Meenakshi Singh, James L McManaman, Christina Finlayson, Tzu Phang, Susan Trapp, Lawrence Hunter, Wendy W Dye, Virginia F Borges, Anthony Elias, Kathryn B Horwitz, Jennifer K Richer
    posted to breast_cancer classification therapy by jfr on 2008-04-14 16:48:35 as **
  • How large a training set is needed to develop a classifier for microarray data?
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 1. (1 January 2008), pp. 108-114.
    by KK Dobbin, Y Zhao, RM Simon
    posted to classification experiment_design methodology statistics by jfr on 2008-04-14 16:46:36 as **** along with 2 people jyuh Natowicz
  • Hybrid Huberized Support Vector Machines for Microarray Classification and Gene Selection.
    Bioinformatics (5 January 2008)
    by Li Wang, Ji Zhu, Hui Zou
    posted to classification feature_selection methodology by jfr on 2008-04-14 15:31:27 as * along with 1 person shigepong
  • Graph kernels for disease outcome prediction from protein-protein interaction networks.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2007), pp. 4-15.
    by KM Borgwardt, HP Kriegel, SV Vishwanathan, NN Schraudolph
    posted to classification gene_expression integration methodology protein_interaction by jfr on 2008-04-11 17:51:25 as ***
  • Systematic review: gene expression profiling assays in early-stage breast cancer.
    Ann Intern Med, Vol. 148, No. 5. (4 March 2008), pp. 358-369.
    by L Marchionni, RF Wilson, AC Wolff, S Marinopoulos, G Parmigiani, EB Bass, SN Goodman
    posted to breast_cancer classification gene_expression review by jfr on 2008-04-09 14:25:05 as read along with 1 person jyuh
  • Expression of epiregulin and amphiregulin and K-ras mutation status predict disease control in metastatic colorectal cancer patients treated with cetuximab.
    Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 25, No. 22. (1 August 2007), pp. 3230-3237.
    by S Khambata-Ford, CR Garrett, NJ Meropol, M Basik, CT Harbison, S Wu, TW Wong, X Huang, CH Takimoto, AK Godwin, BR Tan, SS Krishnamurthi, HA Burris, EA Poplin, M Hidalgo, J Baselga, EA Clark, DJ Mauro
    posted to classification colon_cancer gene_expression therapy by jfr on 2008-04-09 13:55:11 as ****
  • Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets
    BMC Bioinformatics, Vol. 8 (26 October 2007), 415.
    by Michael Gormley, William Dampier, Adam Ertel, Bilge Karacali, Aydin Tozeren
    posted to classification gene_expression by jfr on 2008-03-17 16:14:54 as ** along with 1 person shigepong
  • Molecular staging for survival prediction of colorectal cancer patients.
    J Clin Oncol, Vol. 23, No. 15. (20 May 2005), pp. 3526-3535.
    by S Eschrich, I Yang, G Bloom, KY Kwong, D Boulware, A Cantor, D Coppola, M Kruhøffer, L Aaltonen, TF Orntoft, J Quackenbush, TJ Yeatman
    posted to classification colon_cancer gene_expression staging by jfr on 2008-02-29 10:52:18 as read along with 1 person frohike
  • Classification of Dukes' B and C colorectal cancers using expression arrays.
    J Cancer Res Clin Oncol, Vol. 129, No. 5. (May 2003), pp. 263-271.
    by CM Frederiksen, S Knudsen, S Laurberg, TF Ørntoft
    posted to classification colon_cancer gene_expression staging by jfr on 2008-02-12 16:35:57 as read
  • Stage II colon cancer prognosis prediction by tumor gene expression profiling.
    J Clin Oncol, Vol. 24, No. 29. (10 October 2006), pp. 4685-4691.
    by A Barrier, PY Boelle, F Roser, J Gregg, C Tse, D Brault, F Lacaine, S Houry, M Huguier, B Franc, A Flahault, A Lemoine, S Dudoit
    posted to classification colon_cancer gene_expression stageii by jfr on 2008-02-11 11:58:18 as read along with 1 person frohike
  • Colon cancer prognosis prediction by gene expression profiling
    Oncogene, Vol. aop, No. current.
    by Alain Barrier, Antoinette Lemoine, Pierre-Yves Boelle, Chantal Tse, Didier Brault, Franck Chiappini, Julia Breittschneider, François Lacaine, Sidney Houry, Michel Huguier, Mark J Van der Laan, Terry Speed, Brigitte Debuire, Antoine Flahault, Sandrine Dudoit,
    posted to classification colon_cancer stageii by jfr on 2008-02-11 11:52:09 as read along with 1 person cpnP
  • Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer.
    J Clin Oncol, Vol. 22, No. 9. (1 May 2004), pp. 1564-1571.
    by Y Wang, T Jatkoe, Y Zhang, MG Mutch, D Talantov, J Jiang, HL McLeod, D Atkins
    posted to classification colon_cancer gene_expression stageii by jfr on 2008-02-11 11:44:19 as read
  • Algebraic stability indicators for ranked lists in molecular profiling
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 258-264.
    by Giuseppe Jurman, Stefano Merler, Annalisa Barla, Silvano Paoli, Antonio Galea, Cesare Furlanello
    posted to classification by jfr on 2008-02-06 13:20:01 as read along with 3 people jyuh chad_davis barriot
  • GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest
    BMC Bioinformatics, Vol. 8 (03 September 2007), 328.
    by Ramon Diaz-Uriarte
    posted to classification feature_selection software by jfr on 2008-02-05 11:27:10 as read along with 1 person jyuh
  • Common human cancer genes discovered by integrated gene-expression analysis.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by Y Lu, Y Yi, P Liu, W Wen, M James, D Wang, M You
    posted to meta-analysis cancer classification by jfr on 2008-02-04 10:39:16 as ***
  • Integrated analysis of independent gene expression microarray datasets improves the predictability of breast cancer outcome
    BMC Genomics, Vol. 8 (20 September 2007), 331.
    by Zhe Zhang, Dechang Chen, David A Fenstermacher
    posted to breast_cancer classification integration by jfr on 2008-02-04 09:31:53 as read
  • Selecting differentially expressed genes using minimum probability of classification error.
    J Biomed Inform, Vol. 40, No. 6. (December 2007), pp. 775-786.
    by P Mahata, K Mahata
    posted to classification feature_selection by jfr on 2008-02-04 09:27:49 as *
  • Incorporating prior knowledge of predictors into penalized classifiers with multiple penalty terms.
    Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1775-1782.
    by F Tai, W Pan
    posted to classification methodology priors by jfr on 2008-01-28 16:10:36 as **
  • A new classification model with simple decision rule for discovering optimal feature gene pairs.
    Comput Biol Med, Vol. 37, No. 11. (November 2007), pp. 1637-1646.
    by J Li, X Tang
    posted to classification gene_pairs methodology by jfr on 2008-01-24 17:18:08 as ** along with 1 person jyuh
  • Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1971-1978.
    by C Lottaz, R Spang
    posted to classification by jfr on 2008-01-23 15:50:36 as read along with 1 person and 1 group ealloza BioinfoCIPF
  • Optimality driven nearest centroid classification from genomic data.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by AR Dabney, JD Storey
    posted to classification feature_selection methodology by jfr on 2007-12-18 12:58:17 as ***
  • Derivation of stable microarray cancer-differentiating signatures using consensus scoring of multiple random sampling and gene-ranking consistency evaluation.
    Cancer Res, Vol. 67, No. 20. (15 October 2007), pp. 9996-10003.
    by ZQ Tang, LY Han, HH Lin, J Cui, J Jia, BC Low, BW Li, YZ Chen
    posted to classification by jfr on 2007-12-17 12:18:14 as *** along with 1 person ptrobajo
  • Pharmacogenomic predictor discovery in phase II clinical trials for breast cancer.
    Clin Cancer Res, Vol. 13, No. 20. (15 October 2007), pp. 6080-6086.
    by L Pusztai, K Anderson, KR Hess
    posted to therapy erbb classification breast_cancer by jfr on 2007-12-17 12:16:16 as read
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to breast_cancer classification network by jfr on 2007-12-17 12:07:52 as read along with 12 people and 2 groups kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 Bioinformatics GeneGo
  • The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data
    Genome Biology, Vol. 8 (10 September 2007), R187.
    by Gabriel S Eichler, Mark Reimers, David Kane, John N Weinstein
    posted to classification feature_selection methodology software by jfr on 2007-12-07 14:54:49 as *** along with 3 people rdiaz heliopais waghsk
  • A multiple kernel support vector machine scheme for feature selection and rule extraction from gene expression data of cancer tissue.
    Artif Intell Med, Vol. 41, No. 2. (October 2007), pp. 161-175.
    by Z Chen, J Li, L Wei
    posted to classification feature_selection by jfr on 2007-12-06 11:54:47 as * along with 1 person jyuh
  • Robust interlaboratory reproducibility of a gene expression signature measurement consistent with the needs of a new generation of diagnostic tools
    BMC Genomics, Vol. 8 (07 June 2007), 148.
    by Robert A Ach, Arno Floore, Bo Curry, Vladimir Lazar, Annuska M Glas, Rob Pover, Anya Tsalenko, Hugues Ripoche, Fatima Cardoso, Mahasti S D'assignies, Laurakay Bruhn, Laura
    posted to boutique_arrays classification microarray_technology by jfr on 2007-12-06 11:25:04 as ****
  • Meta-Analysis of Gene Expression Data: A Predictor-Based Approach.
    Bioinformatics (26 April 2007)
    by Irit Fishel, Alon Kaufman, Eytan Ruppin
    posted to meta-analysis classification by jfr on 2007-12-06 11:18:28 as *** along with 1 person shigepong
  • Large-scale integration of cancer microarray data identifies a robust common cancer signature
    BMC Bioinformatics, Vol. 8 (30 July 2007), 275.
    by Lei Xu, Donald Geman, Raimond L Winslow
    posted to meta-analysis classification integration by jfr on 2007-12-04 15:24:37 as **** along with 1 person shigepong
  • Characteristics of predictor sets found using differential prioritization
    Algorithms for Molecular Biology, Vol. 2 (04 June 2007), 7.
    by Chia H Ooi, Madhu Chetty, Shyh W Teng
    posted to classification by jfr on 2007-11-28 12:02:18 as **
  • Selection bias in working with the top genes in supervised classification of tissue samples
    Statistical Methodology, Vol. 3, No. 1. (January 2006), pp. 29-41.
    by X Zhu, C Ambroise, GJ Mclachlan
    posted to classification by jfr on 2007-11-23 16:02:01 as **
  • Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data
    BMC Bioinformatics, Vol. 8 (28 February 2007), 67.
    by Xin Zhao, Leo W Cheung
    posted to classification methodology by jfr on 2007-11-23 15:16:13 as ** along with 2 people jyuh ghattem
  • Gene expression profilers and conventional clinical markers to predict distant recurrences for premenopausal breast cancer patients after adjuvant chemotherapy.
    Eur J Cancer, Vol. 42, No. 16. (November 2006), pp. 2729-2737.
    by E Niméus-Malmström, C Ritz, P Edén, A Johnsson, M Ohlsson, C Strand, G Ostberg, M Fernö, C Peterson
    posted to breast_cancer classification therapy by jfr on 2007-11-23 15:01:07 as ****
  • Predicting a local recurrence after breast-conserving therapy by gene expression profiling
    Breast Cancer Research, Vol. 8 (30 October 2006), R62.
    by Dimitry SA Nuyten, Bas Kreike, Augustinus AM Hart, Jen-Tsan A Chi, Julie B Sneddon, Lodewyk FA Wessels, Hans Peterse, Harry Bartelink, Patrick O Brown, Howard Y Chang, Marc J Van de Vijver
    posted to breast_cancer classification by jfr on 2007-11-20 16:07:13 as **
  • Identification of a robust gene signature that predicts breast cancer outcome in independent data sets
    BMC Cancer, Vol. 7 (11 April 2007), 61.
    by James E Korkola, Ekatarina Blaveri, Sandy Devries, Dan H Moore, Shelley, Yunn-Yi Chen, Anne LH Estep, Karen L Chew, Ron Jensen, Frederic M Waldman
    posted to breast_cancer classification by jfr on 2007-10-08 14:55:56 as ****
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