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julius library [69 articles]

Статьи, недавно добавленные в библиотеку julius library ordered by importance.
  • Drug[mdash]target network
    Nat Biotech, Vol. 25, No. 10. (October 2007), pp. 1119-1126.
    by Muhammed A Yildirim, Kwang-Il Goh, Michael E Cusick, Albert-Laszlo Barabasi, Marc Vidal
    posted to drug sysbio by julius on 2007-10-19 01:34:30 as *** along with 9 people and 1 group Yanno jyuh cannin jfr grahamc cjeans zwang dejori mingzhi libr
  • From Pathways Databases to Network Models of Switching Behavior
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152.
    by Baltazar D Aguda, Andrew B Goryachev
    posted to bioinformatics boolean qualitative sysbio by julius on 2007-09-29 16:23:37 as *** along with 3 people bayesian zwang Ema
  • Numerical Matrices Method for Nonlinear System Identification and Description of Dynamics of Biochemical Reaction Networks
    Biophys. J., Vol. 92, No. 10. (15 May 2007), pp. 3459-3473.
    by Alexey V Karnaukhov, Elena V Karnaukhova, James R Williamson
    posted to discrimination paramestim sysbio by julius on 2007-06-01 16:46:14 as *** along with 2 people and 1 group Borelli dylan77 SysbioMPI-TCells
  • GINsim: A software suite for the qualitative modelling, simulation and analysis of regulatory networks
    Biosystems, Vol. 84, No. 2. (May 2006), pp. 91-100.
    by Gonzalez A Gonzalez, A Naldi, L Sanchez, D Thieffry, C Chaouiya
    posted to qualitative sysbio by julius on 2006-05-07 17:23:09 as *** along with 2 people and 2 groups nsamways rhem1224 TCR_Signaling SysbioMPI-TCells
  • Trading the micro-world of combinatorial complexity for the macro-world of protein interaction domains
    Biosystems, Vol. 83, No. 2-3. ( 2006), pp. 152-166.
    by Nikolay M Borisov, Nick I Markevich, Jan B Hoek, Boris N Kholodenko
    posted to insulin sysbio by julius on 2006-02-23 14:00:46 as *** along with 1 group SysbioMPI-TCells
  • Investigating the dynamic behavior of biochemical networks using model families.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1617-1625.
    by MD Haunschild, B Freisleben, R Takors, W Wiechert
    posted to discrimination sysbio by julius on 2006-01-23 17:54:19 as *** along with 1 group SysbioMPI-TCells
  • Computational modelling of ErbB family phosphorylation dynamics in response to transforming growth factor alpha and heregulin indicates spatial compartmentation of phosphatase activity
    IEE Proceedings - Systems Biology, Vol. 153, No. 1. (2006), pp. 22-33.
    by BS Hendriks, J Cook, JM Burke, JM Beusmans, DA Lauffenburger, D de Graaf
    posted to egf erbb sysbio by julius on 2006-01-19 13:36:12 as *** along with 1 group SysbioMPI-TCells
  • Systems-level dissection of the cell-cycle oscillator: bypassing positive feedback produces damped oscillations.
    Cell, Vol. 122, No. 4. (26 August 2005), pp. 565-578.
    by JR Pomerening, SY Kim, JE Ferrell
    posted to cellcycle multistability sysbio by julius on 2006-01-18 09:27:17 as *** along with 1 person and 1 group rklancer SysbioMPI-TCells
  • Executable cell biology
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1239-1249.
    by Jasmin Fisher, Thomas A Henzinger
    posted to qualitative by julius on 2007-11-09 01:14:29 as ** along with 9 people and 2 groups Doug tmmurali austin dbikard neils cjeans hpaces mircea tlandrain csb_journal_club_public Centre de Recherches Interdisciplinaires
  • A novel method for signal transduction network inference from indirect experimental evidence.
    J Comput Biol, Vol. 14, No. 7. (September 2007), pp. 927-949.
    by R Albert, B DasGupta, R Dondi, S Kachalo, E Sontag, A Zelikovsky, K Westbrooks
    posted to reverse_eng by julius on 2007-11-08 15:16:19 as **
  • Bridging from molecular simulation to biochemical networks.
    Curr Opin Struct Biol, Vol. 17, No. 2. (April 2007), pp. 166-172.
    by M Stein, RR Gabdoulline, RC Wade
    posted to bioinformatics paramestim by julius on 2007-09-28 15:58:41 as ** along with 5 people higueruelo aqeel Borelli cmmorel ras
  • Scaffold proteins confer diverse regulatory properties to protein kinase cascades --
    Proceedings of the National Academy of Sciences (2007)
    by Locasale
    posted to no-tag by julius on 2007-09-02 17:15:13 as ** along with 1 group SysbioMPI-TCells
  • The community structure of human cellular signaling network.
    J Theor Biol, Vol. 247, No. 4. (21 August 2007), pp. 608-615.
    by Y Diao, M Li, Z Feng, J Yin, Y Pan
    posted to modularity by julius on 2007-08-01 15:20:51 as ** along with 1 group SysbioMPI-TCells
  • Machine Learning and Its Applications to Biology
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e116.
    by Adi L Tarca, Vincent J Carey, Xue-Wen Chen, Roberto Romero, Sorin Drăghici
    posted to no-tag by julius on 2007-07-08 17:29:20 as ** along with 7 people and 2 groups Borelli skhadar cjeans asddd ciga nklee kmdaily SysbioMPI-TCells Computational_Information_Geometry
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by R Linding, LJ Jensen, GJ Ostheimer, MA van Vugt, C Jørgensen, IM Miron, F Diella, K Colwill, L Taylor, K Elder, P Metalnikov, V Nguyen, A Pasculescu, J Jin, JG Park, LD Samson, JR Woodgett, RB Russell, P Bork, MB Yaffe, T Pawson
    posted to no-tag by julius on 2007-07-08 17:28:06 as ** along with 14 people and 2 groups chad_davis carlk daed Evangelia renatomilani jyuh skhadar zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen SysbioMPI-TCells Durbin group
  • A Kinetic Model for Calcium Dynamics in RAW 264.7 Cells: 1. Mechanisms, Parameters and Sub-populational Variability.
    Biophys J (4 May 2007)
    by Mano Ram R Maurya, Shankar Subramaniam
    posted to sysbio by julius on 2007-05-28 22:30:43 as ** along with 1 group SysbioMPI-TCells
  • Network-based prediction of protein function
    Mol Syst Biol, Vol. 3 (13 March 2007)
    by Roded Sharan, Igor Ulitsky, Ron Shamir
    posted to modularity sysbio by julius on 2007-05-22 17:46:27 as ** along with 11 people and 1 group ellakat carlk jjray cmmorel wnpx mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi SysbioMPI-TCells
  • eprintweb - Author Index Davidich, q-bio archive
    arXiv (2007)
    by Davidlich Bornholdt
    posted to boolean by julius on 2007-05-20 18:03:50 as ** along with 1 group SysbioMPI-TCells
  • Quantitative proteomic assessment of very early cellular signaling events
    Nat Biotech, Vol. 25, No. 5. (June 2007), pp. 566-568.
    by Joern Dengjel, Vyacheslav Akimov, Jesper V Olsen, Jakob Bunkenborg, Matthias Mann, Blagoy Blagoev, Jens S Andersen
    posted to expmethod highthroughput by julius on 2007-05-14 01:50:28 as ** along with 2 people and 1 group Yanno rastrol7 SysbioMPI-TCells
  • Image-based multivariate profiling of drug responses from single cells
    Nature Methods, Vol. 4, No. 5. (01 April 2007), pp. 445-453.
    by Lit-Hsin Loo, Lani F Wu, Steven J Altschuler
    posted to expmethod highthroughput by julius on 2007-05-14 01:45:24 as ** along with 2 people and 1 group dlmace balabu SysbioMPI-TCells
  • Induction of Cyclooxygenase-2 by the Activated MEKK1 right-arrow SEK1/MKK4 right-arrow p38 Mitogen-activated Protein Kinase Pathway
    J. Biol. Chem., Vol. 273, No. 21. (22 May 1998), pp. 12901-12908.
    by Zhonghong Guan, Shaavhree Y Buckman, Alice P Pentland, Dennis J Templeton, Aubrey R Morrison
    posted to mitcr by julius on 2006-06-28 19:07:19 as ** along with 1 person and 1 group Drewes SysbioMPI-TCells
  • Calmodulin-dependent kinase II mediates T cell receptor/CD3- and phorbol ester-induced activation of IkappaB kinase.
    J Biol Chem, Vol. 276, No. 38. (21 September 2001), pp. 36008-36013.
    by K Hughes, S Edin, A Antonsson, T Grundström
    posted to mitcr by julius on 2006-06-28 18:44:02 as ** along with 1 person and 1 group UrsulaBommhardt SysbioMPI-TCells
  • Scaffolding protein GAB1 sustains epidermal growth factor-induced mitogenic and survival signaling by multiple positive feedback loops.
    J Biol Chem (9 May 2006)
    by Anatoly Kiyatkin, Edita Aksamitiene, Nick I I Markevich, Nikolay M M Borisov, Jan B B Hoek, Boris N N Kholodenko
    posted to egf sysbio by julius on 2006-06-05 19:47:14 as ** along with 1 group SysbioMPI-TCells
  • Molecular flexibility can influence the stimulatory ability of receptor-ligand interactions at cell-cell junctions.
    Proc Natl Acad Sci U S A, Vol. 103, No. 12. (21 March 2006), pp. 4416-4421.
    by S Qi, M Krogsgaard, MM Davis, AK Chakraborty
    posted to immune sysbio tcell by julius on 2006-06-05 19:46:39 as ** along with 1 person and 1 group lna SysbioMPI-TCells
  • Multiplexed protein measurement: technologies and applications of protein and antibody arrays
    Nature Reviews Drug Discovery, Vol. 5, No. 4. (17 March 2006), pp. 310-321.
    by Stephen F Kingsmore
    posted to proteomics quantification by julius on 2006-04-10 10:30:03 as ** along with 1 group SysbioMPI-TCells
  • Lingering mysteries of ubiquitin-chain assembly.
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 27-34.
    by M Hochstrasser
    posted to no-tag by julius on 2006-03-25 11:37:43 as ** along with 1 group SysbioMPI-TCells
  • A method for the generation of standardized qualitative dynamical systems of regulatory networks
    Theoretical Biology and Medical Modelling, Vol. 3, No. 1. (16 March 2006), 13.
    by Luis Mendoza, Ioannis Xenarios
    posted to immune sysbio tcell by julius on 2006-03-21 08:48:18 as ** along with 1 group SysbioMPI-TCells
  • Quantitative analysis of phosphotyrosine signaling networks triggered by CD3 and CD28 costimulation in jurkat cells.
    J Immunol, Vol. 176, No. 5. (1 March 2006), pp. 2833-2843.
    by JE Kim, FM White
    posted to quantification tcell by julius on 2006-03-07 15:06:13 as ** along with 2 people and 3 groups rhem1224 cdppublications TCR_Signaling SysbioMPI-TCells CDP
  • Model of IP3 and Ca2+ oscillations: Frequency encoding and identification of underlying feedbacks.
    Biophys J (24 February 2006)
    by Antonio Politi, Lawrence D D Gaspers, Andrew P P Thomas, Thomas Höfer
    posted to sysbio by julius on 2006-03-06 12:30:54 as ** along with 1 group SysbioMPI-TCells
  • Colored Petri net modeling and simulation of signal transduction pathways
    Metabolic Engineering, Vol. 8, No. 2. (March 2006), pp. 112-122.
    by Dong-Yup Lee, Ralf Zimmer, Sang Y Lee, Sunwon Park
    posted to egf petrinets sysbio by julius on 2006-03-03 12:57:31 as ** along with 1 person and 1 group lukaswindhager SysbioMPI-TCells
  • Src kinase regulation by phosphorylation and dephosphorylation.
    Biochem Biophys Res Commun, Vol. 331, No. 1. (27 May 2005), pp. 1-14.
    by R Roskoski
    posted to immune src tcell by julius on 2006-02-28 10:24:18 as ** along with 2 people and 1 group carmenv jyuh SysbioMPI-TCells
  • Quantitative analysis of ultrasensitive responses
    FEBS Journal, Vol. 272, No. 16. (2005), pp. 4071-4079.
    by Stefan Legewie, Nils Bluthgen, Hanspeter Herzel
    posted to sysbio by julius on 2006-02-23 14:08:05 as ** along with 1 group SysbioMPI-TCells
  • Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome
    Trends in Biotechnology, Vol. 20, No. 6. (1 June 2002), pp. 261-268.
    by Matthias Mann, Shao-En Ong, Mads Gronborg, Hanno Steen, Ole N Jensen, Akhilesh Pandey
    posted to quantification sysbio by julius on 2006-02-06 15:48:29 as ** along with 1 group SysbioMPI-TCells
  • A systematic framework for the design of reduced-order models for signal transduction pathways from a control theoretic perspective
    Computers & Chemical Engineering, Vol. 30, No. 3. (15 January 2006), pp. 437-452.
    by Mano R Maurya, Santhoji Katare, Priyan R Patkar, Ann E Rundell, Venkat Venkatasubramanian
    posted to modelreduction sysbio by julius on 2006-02-03 11:48:41 as ** along with 1 person and 1 group jrbanga SysbioMPI-TCells
  • Robustness trade-offs and host-microbial symbiosis in the immune system
    Mol Syst Biol, Vol. 2, No. 1. (17 January 2006), pp. msb4100039-E1-msb4100039-E10.
    by Hiroaki Kitano, Kanae Oda
    posted to immune robustness sysbio by julius on 2006-02-01 08:20:55 as ** along with 1 person and 2 groups rhem1224 TCR_Signaling SysbioMPI-TCells
  • Mapping normal and cancer cell signalling networks: towards single-cell proteomics
    Nat Rev Cancer, Vol. 6, No. 2. (February 2006), pp. 146-155.
    by Jonathan M Irish, Nikesh Kotecha, Garry P Nolan
    posted to map by julius on 2006-01-25 08:15:12 as ** along with 1 group SysbioMPI-TCells
  • Critical nodes in signalling pathways: insights into insulin action
    Nat Rev Mol Cell Biol, Vol. 7, No. 2. (February 2006), pp. 85-96.
    by Cullen M Taniguchi, Brice Emanuelli, Ronald C Kahn
    posted to insulin map by julius on 2006-01-25 08:11:33 as ** along with 3 people and 2 groups tmmurali okarsligil cjeans Bioinformatics SysbioMPI-TCells
  • MAPKAP kinases â MKs â two's company, three's a crowd
    Nat Rev Mol Cell Biol, Vol. 7, No. 2. (February 2006), pp. 120-130.
    by Matthias Gaestel
    posted to mapk by julius on 2006-01-25 08:08:35 as ** along with 1 person and 1 group jyuh SysbioMPI-TCells
  • Computer evaluation of network dynamics models with application to cell cycle control in budding yeast
    IEE Proceedings - Systems Biology, Vol. 153, No. 1. (2006), pp. 13-21.
    by NA Allen, KC Chen, CA Shaffer, JJ Tyson, LT Watson
    posted to cellcyle discrimination sysbio by julius on 2006-01-19 13:39:07 as ** along with 1 group SysbioMPI-TCells
  • A quantitative protein interaction network for the ErbB receptors using protein microarrays
    Nature (06 November 2005)
    by Richard B Jones, Andrew Gordus, Jordan A Krall, Gavin Macbeath
    posted to egf map by julius on 2006-01-18 09:07:26 as ** along with 6 people and 4 groups okarsligil jfr marcius tny koller pjasper Bioinformatics SysbioMPI-TCells BioinfoCIPF SGU-CIPF
  • Bcl10 and MALT1, independent targets of chromosomal translocation in malt lymphoma, cooperate in a novel NF-kappa B signaling pathway.
    J Biol Chem, Vol. 276, No. 22. (1 June 2001), pp. 19012-19019.
    by PC Lucas, M Yonezumi, N Inohara, LM McAllister-Lucas, ME Abazeed, FF Chen, S Yamaoka, M Seto, G Nunez
    posted to mitcr by julius on 2006-06-28 18:40:59 as * along with 2 people and 2 groups rhem1224 Drewes TCR_Signaling SysbioMPI-TCells
  • CARMA1 is a critical lipid raft-associated regulator of TCR-induced NF-kappa B activation.
    Nat Immunol, Vol. 3, No. 9. (September 2002), pp. 836-843.
    by O Gaide, B Favier, DF Legler, D Bonnet, B Brissoni, S Valitutti, C Bron, J Tschopp, M Thome
    posted to mitcr by julius on 2006-06-28 18:37:55 as * along with 2 people and 2 groups rhem1224 Drewes TCR_Signaling SysbioMPI-TCells
  • CARMA1, BCL-10 and MALT1 in lymphocyte development and activation.
    Nat Rev Immunol, Vol. 4, No. 5. (May 2004), pp. 348-359.
    by M Thome
    posted to mitcr by julius on 2006-06-28 18:27:14 as * along with 3 people and 2 groups rhem1224 shimi002 UrsulaBommhardt TCR_Signaling SysbioMPI-TCells
  • Activation of p21-CDC42/Rac-activated kinases by CD28 signaling: p21-activated kinase (PAK) and MEK kinase 1 (MEKK1) may mediate the interplay between CD3 and CD28 signals.
    J Immunol, Vol. 160, No. 9. (1 May 1998), pp. 4182-4189.
    by S Kaga, S Ragg, KA Rogers, A Ochi
    posted to mitcr by julius on 2006-06-28 18:22:54 as * along with 1 group SysbioMPI-TCells
  • MEK kinases are regulated by EGF and selectively interact with Rac/Cdc42.
    EMBO J, Vol. 16, No. 16., pp. 4961-4972.
    by Fanger
    posted to mitcr by julius on 2006-06-28 18:19:52 as * along with 1 group SysbioMPI-TCells
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