Cytoscape ESP: simple search of complex biological networks.

by: Maital Ashkenazi, Gary D D Bader, Allan Kuchinsky, Menachem Moshelion, David J J States

Bioinformatics (Oxford, England) (28 April 2008)

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Abstract

SUMMARY: Cytoscape ESP enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks. AVAILABILITY: http://conklinwolf.ucsf.edu/genmappwiki/Google_Summer_of_Code_2007/Maital CONTACT: ashkenaz@agri.huji.ac.il.

@article{citeulike:2753246, abstract = {SUMMARY: Cytoscape ESP enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks. AVAILABILITY: http://conklinwolf.ucsf.edu/genmappwiki/Google\_Summer\_of\_Code\_2007/Maital CONTACT: ashkenaz@agri.huji.ac.il.}, address = {Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot, IL.}, author = {Ashkenazi, Maital and Bader, Gary D D. and Kuchinsky, Allan and Moshelion, Menachem and States, David J J. }, citeulike-article-id = {2753246}, doi = {10.1093/bioinformatics/btn208}, issn = {1460-2059}, journal = {Bioinformatics (Oxford, England)}, keywords = {imaging, software}, month = {April}, posted-at = {2008-05-16 03:43:11}, priority = {2}, title = {Cytoscape ESP: simple search of complex biological networks.}, url = {http://dx.doi.org/10.1093/bioinformatics/btn208}, year = {2008} }

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TY - JOUR ID - citeulike:2753246 L3 - citeulike-article-id:2753246 TI - Cytoscape ESP: simple search of complex biological networks. JF - Bioinformatics (Oxford, England) AD - Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot, IL. SN - 1460-2059 N2 - SUMMARY: Cytoscape ESP enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks. AVAILABILITY: http://conklinwolf.ucsf.edu/genmappwiki/Google_Summer_of_Code_2007/Maital CONTACT: ashkenaz@agri.huji.ac.il. KW - imaging KW - software AU - Ashkenazi, Maital AU - Bader, Gary D AU - Kuchinsky, Allan AU - Moshelion, Menachem AU - States, David J PY - 2008/04/28/ UR - http://dx.doi.org/10.1093/bioinformatics/btn208 ER -

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