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jyuh Johnson [168 articles]

Recent papers posted to jyuh library by the author Johnson. You can also see Johnson everyone.
  • A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
    Nature Biotechnology, Vol. 26, No. 7. (08 July 2008), pp. 779-785.
    by Thomas A Down, Vardhman K Rakyan, Daniel J Turner, Paul Flicek, Heng Li, Eugene Kulesha, Stefan Gräf, Nathan Johnson, Javier Herrero, Eleni M Tomazou, Natalie P Thorne, Liselotte Bäckdahl, Marlis Herberth, Kevin L Howe, David K Jackson, Marcos M Miretti, John C Marioni, Ewan Birney, Tim JP Hubbard, Richard Durbin, Simon Tavaré, Stephan Beck
    posted to methylation bayes by jyuh on 2008-07-25 15:38:08 as ** along with 3 people slevy03 bpcusack oelemento
  • Proteomic methodological recommendations for studies involving human plasma, platelets, and peripheral blood mononuclear cells.
    Journal of proteome research, Vol. 7, No. 6. (June 2008), pp. 2280-2290.
    by B de Roos, SJ Duthie, AC Polley, F Mulholland, FG Bouwman, C Heim, GJ Rucklidge, IT Johnson, EC Mariman, H Daniel, RM Elliott
    posted to proteomics blood by jyuh on 2008-07-24 10:22:44 as **
  • A multi-level two-part random effects model, with application to an alcohol-dependence study.
    Statistics in medicine (25 January 2008)
    by Lei Liu, Jennie Z Z Ma, Bankole A A Johnson
    posted to mixed-model by jyuh on 2008-07-22 05:21:43 as ** along with 1 person plm
  • Bayesian Survival Analysis in Genetic Association Studies.
    Bioinformatics (Oxford, England) (9 July 2008)
    by Ioanna Tachmazidou, Toby Andrew, Claudio J J Verzilli, Michael R R Johnson, Maria De D Iorio
    posted to survival bayes association by jyuh on 2008-07-22 04:40:45 as ** along with 1 person djkt
  • On modelling metabolism-based biomarkers of exposure: a comparative analysis of nonlinear models with few repeated measurements.
    Statistics in medicine, Vol. 26, No. 9. (30 April 2007), pp. 1901-1919.
    by BA Johnson, SM Rappaport
    posted to nonlinear longitudinal environment biomarker by jyuh on 2008-07-22 02:51:09 as **
  • Epidermal sensing of oxygen is essential for systemic hypoxic response.
    Cell, Vol. 133, No. 2. (18 April 2008), pp. 223-234.
    by AT Boutin, A Weidemann, Z Fu, L Mesropian, K Gradin, C Jamora, M Wiesener, KU Eckardt, CJ Koch, LG Ellies, G Haddad, VH Haase, MC Simon, L Poellinger, FL Powell, RS Johnson
    posted to skin hypoxia hif by jyuh on 2008-07-16 07:45:28 as **
  • Biology of HIF-1α
    Cell Death and Differentiation, Vol. aop, No. current.
    by A Weidemann, RS Johnson
    posted to hif by jyuh on 2008-07-16 07:39:26 as **
  • Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens.
    Journal of biomolecular screening : the official journal of the Society for Biomolecular Screening, Vol. 13, No. 5. (June 2008), pp. 378-389.
    by XD Zhang, AS Espeseth, EN Johnson, J Chin, A Gates, LJ Mitnaul, SD Marine, J Tian, EM Stec, P Kunapuli, DJ Holder, JF Heyse, B Strulovici, M Ferrer
    posted to rnai hts by jyuh on 2008-07-15 05:36:51 as **
  • Is the declining use of long-term peritoneal dialysis justified by outcome data?
    Clinical journal of the American Society of Nephrology : CJASN, Vol. 2, No. 6. (November 2007), pp. 1317-1328.
    by O Khawar, K Kalantar-Zadeh, WK Lo, D Johnson, R Mehrotra
    posted to pd by jyuh on 2008-07-14 03:04:24 as **
  • Real-time PCR quantification using a variable reaction efficiency model.
    Analytical biochemistry (5 June 2008)
    by Adrian E E Platts, Graham D D Johnson, Amelia K K Linnemann, Stephen A A Krawetz
    posted to statistics pcr by jyuh on 2008-07-11 04:18:33 as **
  • IL-10, IL-6, and TNF-alpha: Central factors in the altered cytokine network of uremia-The good, the bad, and the ugly
    Kidney International, Vol. 67, No. 4. (April 2005), pp. 1216-1233.
    by Stenvinkel Peter, Ketteler Markus, J Johnson, Lindholm Bengt, Pecoits-Filho Roberto, Riella Miguel, Heimburger Olof, Cederholm Tommy, Girndt Matthias
    posted to hd cytokine by jyuh on 2008-07-05 10:36:49 as **
  • A randomized controlled trial of fludrocortisone for the treatment of hyperkalemia in hemodialysis patients.
    American journal of kidney diseases : the official journal of the National Kidney Foundation, Vol. 47, No. 5. (May 2006), pp. 809-814.
    by MO Kaisar, KJ Wiggins, JM Sturtevant, CM Hawley, SB Campbell, NM Isbel, DW Mudge, A Bofinger, JJ Petrie, DW Johnson
    posted to k hd by jyuh on 2008-07-03 13:58:43 as **
  • Dietary protein restriction as a treatment for slowing chronic kidney disease progression: The case against (Review Article)
    Nephrology, Vol. 11, No. 1. (February 2006), pp. 58-62.
    by David W Johnson
    posted to lpd ckd by jyuh on 2008-06-29 03:45:36 as **
  • Association of ABCB1 genetic variants with renal function in Africans and in Caucasians.
    BMC medical genomics, Vol. 1 (2008)
    by M Bochud, CB Eap, M Maillard, T Johnson, P Vollenweider, P Bovet, RC Elston, S Bergmann, JS Beckmann, DM Waterworth, V Mooser, A Gabriel, M Burnier
    posted to snp ckd by jyuh on 2008-06-17 06:50:30 as **
  • The logarithmic transformation and the geometric mean in reporting experimental IgE results: what are they and when and why to use them?
    Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology, Vol. 100, No. 4. (April 2008), pp. 333-337.
    by J Olivier, WD Johnson, GD Marshall
    posted to transformation log-linear by jyuh on 2008-06-13 15:35:29 as **
  • Recent clinical trials of pharmacologic cardiovascular interventions in patients with chronic kidney disease.
    Reviews on recent clinical trials, Vol. 3, No. 2. (May 2008), pp. 79-88.
    by MO Kaisar, NM Isbel, DW Johnson
    posted to rct cv ckd by jyuh on 2008-06-13 03:10:45 as **
  • The problems in scaling adult drug doses to children.
    Archives of disease in childhood, Vol. 93, No. 3. (March 2008), pp. 207-211.
    by TN Johnson
    posted to scaling pediatric by jyuh on 2008-06-09 03:52:36 as **
  • Bayesian sample size for exploratory clinical trials incorporating historical data.
    Statistics in medicine, Vol. 27, No. 13. (15 June 2008), pp. 2307-2327.
    by J Whitehead, E Valdés-Márquez, P Johnson, G Graham
    posted to rct power bayes by jyuh on 2008-06-06 14:13:51 as **
  • A minimal Ksp-cadherin promoter linked to a green fluorescent protein reporter gene exhibits tissue-specific expression in the developing kidney and genitourinary tract.
    Journal of the American Society of Nephrology : JASN, Vol. 13, No. 7. (July 2002), pp. 1824-1836.
    by X Shao, JE Johnson, JA Richardson, T Hiesberger, P Igarashi
    posted to no-tag by jyuh on 2008-06-06 05:19:20 as **
  • Nutrient Ingestion, Protein Intake, and Sex, but Not Age, Affect the Albumin Synthesis Rate in Humans
    J. Nutr., Vol. 137, No. 7. (1 July 2007), pp. 1734-1740.
    by Anna E Thalacker-Mercer, Craig A Johnson, Kevin E Yarasheski, Nadine S Carnell, Wayne W Campbell
    posted to gender dpi albumin aging by jyuh on 2008-06-02 04:32:08 as **
  • Ecological genomics: understanding gene and genome function in the natural environment
    Heredity, Vol. aop, No. current.
    by MC Ungerer, LC Johnson, MA Herman
    posted to epigenetics by jyuh on 2008-05-22 04:34:54 as **
  • The effect of increasing dialysis dose in overweight hemodialysis patients on quality of life: a 6-week randomized crossover trial.
    American journal of kidney diseases : the official journal of the National Kidney Foundation, Vol. 51, No. 5. (May 2008), pp. 796-803.
    by W Wang, M Tonelli, B Hemmelgarn, S Gao, JA Johnson, K Taub, B Manns,
    posted to hd rct obesity by jyuh on 2008-05-20 03:52:42 as **
  • Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
    Nature Biotechnology, Vol. 26, No. 3. (07 March 2008), pp. 305-312.
    by Eric W Deutsch, Catherine A Ball, Jules J Berman, Steven G Bova, Alvis Brazma, Roger E Bumgarner, David Campbell, Helen C Causton, Jeffrey H Christiansen, Fabrice Daian, Delphine Dauga, Duncan R Davidson, Gregory Gimenez, Young A Goo, Sean Grimmond, Thorsten Henrich, Bernhard G Herrmann, Michael H Johnson, Martin Korb, Jason C Mills, Asa J Oudes, Helen E Parkinson, Laura E Pascal, Nicolas Pollet, John Quackenbush, Mirana Ramialison, Martin Ringwald, David Salgado, Susanna-Assunta Sansone, Gavin Sherlock, Christian J Stoeckert, Jason Swedlow, Ronald C Taylor, Laura Walashek, Anthony Warford, David G Wilkinson, Yi Zhou, Leonard I Zon, Alvin Y Liu, Lawrence D True
    posted to ihc by jyuh on 2008-05-18 03:12:22 as ** along with 4 people and 1 group jfr psique katerinakal zwang parkinson's disease references
  • NF-κB links innate immunity to the hypoxic response through transcriptional regulation of HIF-1α
    Nature (23 April 2008)
    by Jordi Rius, Monica Guma, Christian Schachtrup, Katerina Akassoglou, Annelies S Zinkernagel, Victor Nizet, Randall S Johnson, Gabriel G Haddad, Michael Karin
    posted to nfkb immunity hypoxia hif by jyuh on 2008-05-12 10:51:36 as **
  • Croup.
    Lancet, Vol. 371, No. 9609. (26 January 2008), pp. 329-339.
    by CL Bjornson, DW Johnson
    posted to no-tag by jyuh on 2008-05-09 04:14:58 as **
  • Effects of statins in patients with chronic kidney disease: meta-analysis and meta-regression of randomised controlled trials
    BMJ, Vol. 336, No. 7645. (22 March 2008), pp. 645-651.
    by Giovanni F Strippoli, Sankar D Navaneethan, David W Johnson, Vlado Perkovic, Fabio Pellegrini, Antonio Nicolucci, Jonathan C Craig
    posted to statin rct meta-analysis ckd by jyuh on 2008-05-08 09:14:25 as ** along with 1 person omalbam
  • Treatment with the xanthine oxidase inhibitor febuxostat lowers uric acid and alleviates systemic and glomerular hypertension in experimental hyperuricaemia.
    Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association, Vol. 23, No. 4. (April 2008), pp. 1179-1185.
    by LG Sánchez-Lozada, E Tapia, V Soto, C Avila-Casado, M Franco, L Zhao, RJ Johnson
    posted to no-tag by jyuh on 2008-05-08 09:12:42 as **
  • Dissecting long-range transcriptional mechanisms by chromatin immunoprecipitation.
    Methods (San Diego, Calif.), Vol. 26, No. 1. (January 2002), pp. 27-36.
    by KD Johnson, EH Bresnick
    posted to no-tag by jyuh on 2008-05-07 09:46:55 as **
  • RatMap--rat genome tools and data.
    Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005)
    by G Petersen, P Johnson, L Andersson, K Klinga-Levan, PM Gómez-Fabre, F Ståhl
    posted to no-tag by jyuh on 2008-05-05 05:41:29 as **
  • Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans
    Nature, Vol. 439, No. 7078., pp. 851-855.
    by Timothy J Aitman, Rong Dong, Timothy J Vyse, Penny J Norsworthy, Michelle D Johnson, Jennifer Smith, Jonathan Mangion, Cheri Roberton-Lowe, Amy J Marshall, Enrico Petretto, Matthew D Hodges, Gurjeet Bhangal, Sheetal G Patel, Kelly Sheehan-Rooney, Mark Duda, Paul R Cook, David J Evans, Jan Domin, Jonathan Flint, Joseph J Boyle, Charles D Pusey, Terence H Cook
    posted to no-tag by jyuh on 2008-04-25 05:00:56 as ** along with 4 people and 2 groups ccots cmm breden vplagnol FAB-lab SFUAntibodyResearch
  • Fluorometric assay for quantitation of biotin covalently attached to proteins and nucleic acids.
    BioTechniques, Vol. 43, No. 4. (October 2007), pp. 503-507.
    by RH Batchelor, A Sarkez, WG Cox, I Johnson
    posted to no-tag by jyuh on 2008-04-25 03:29:14 as **
  • OpenDMAP: An open-source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-specific gene expression
    BMC Bioinformatics, Vol. 9 (31 January 2008), 78.
    by Lawrence Hunter, Zhiyong Lu, James Firby, William A Baumgartner, Helen L Johnson, Philip V Ogren, Bretonnel K Cohen
    posted to no-tag by jyuh on 2008-04-25 03:03:11 as ** along with 4 people and 1 group yas satre sobolevnrm thomaskelder baker-group
  • CKD and cardiovascular disease in screened high-risk volunteer and general populations: the Kidney Early Evaluation Program (KEEP) and National Health and Nutrition Examination Survey (NHANES) 1999-2004.
    American journal of kidney diseases : the official journal of the National Kidney Foundation, Vol. 51, No. 4 Suppl 2. (April 2008)
    by PA McCullough, S Li, CT Jurkovitz, LA Stevens, C Wang, AJ Collins, SC Chen, KC Norris, SI McFarlane, B Johnson, MG Shlipak, CI Obialo, WW Brown, JA Vassalotti, AT Whaley-Connell,
    posted to screening nhanes keep cv ckd by jyuh on 2008-04-24 03:01:43 as **
  • Src activation is not necessary for transforming growth factor (TGF)-beta-mediated epithelial to mesenchymal transitions (EMT) in mammary epithelial cells. PP1 directly inhibits TGF-beta receptors I and II.
    The Journal of biological chemistry, Vol. 281, No. 1. (6 January 2006), pp. 59-68.
    by M Maeda, Y Shintani, MJ Wheelock, KR Johnson
    posted to no-tag by jyuh on 2008-04-19 11:38:49 as **
  • CEBS Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data.
    Nucleic Acids Res (25 October 2007)
    by Michael Waters, Stanley Stasiewicz, B Alex A Merrick, Kenneth Tomer, Pierre Bushel, Richard Paules, Nancy Stegman, Gerald Nehls, Kenneth J J Yost, C Harris H Johnson, Scott F F Gustafson, Sandhya Xirasagar, Nianqing Xiao, Cheng-Cheng C Huang, Paul Boyer, Denny D D Chan, Qinyan Pan, Hui Gong, John Taylor, Danielle Choi, Asif Rashid, Ayazaddin Ahmed, Reese Howle, James Selkirk, Raymond Tennant, Jennifer Fostel
    posted to toxic by jyuh on 2008-03-18 04:05:54 as **
  • A SAS program for calculating cumulative incidence of events (with confidence limits) and number at risk at specified time intervals with partially censored data.
    Comput Methods Programs Biomed, Vol. 89, No. 1. (January 2008), pp. 50-55.
    by AD Penman, WD Johnson
    posted to no-tag by jyuh on 2008-03-17 03:35:12 as **
  • Proteomics, nanotechnology and molecular diagnostics.
    Proteomics, Vol. 8, No. 4. (February 2008), pp. 715-730.
    by CJ Johnson, N Zhukovsky, AE Cass, JM Nagy
    posted to no-tag by jyuh on 2008-03-11 04:04:24 as **
  • Negative modulation of signal transduction via interleukin splice variation.
    Proteins, Vol. 71, No. 2. (2 November 2007), pp. 751-770.
    by Konstantin A A Denessiouk, Alexander I I Denesyuk, Mark S S Johnson
    posted to no-tag by jyuh on 2008-03-10 02:29:04 as **
  • Progenitor/stem cells give rise to liver cancer due to aberrant TGF-beta and IL-6 signaling.
    Proc Natl Acad Sci U S A, Vol. 105, No. 7. (19 February 2008), pp. 2445-2450.
    by Y Tang, K Kitisin, W Jogunoori, C Li, CX Deng, SC Mueller, HW Ressom, A Rashid, AR He, JS Mendelson, JM Jessup, K Shetty, M Zasloff, B Mishra, EP Reddy, L Johnson, L Mishra
    posted to no-tag by jyuh on 2008-03-10 02:17:25 as **
  • Disruption of transforming growth factor-β signaling through β-spectrin ELF leads to hepatocellular cancer through cyclin D1 activation
    Oncogene, Vol. aop, No. current.
    by K Kitisin, N Ganesan, Y Tang, W Jogunoori, EA Volpe, SS Kim, V Katuri, B Kallakury, M Pishvaian, C Albanese, J Mendelson, M Zasloff, A Rashid, T Fishbein, SRT Evans, A Sidawy, EP Reddy, B Mishra, LB Johnson, K Shetty, L Mishra
    posted to no-tag by jyuh on 2008-03-10 02:17:18 as **
  • Urinary biomarkers in the early diagnosis of acute kidney injury.
    Kidney Int (5 December 2007)
    by W K K Han, S S S Waikar, A Johnson, R A A Betensky, C L L Dent, P Devarajan, J V V Bonventre
    posted to urine biomarker arf by jyuh on 2008-03-04 04:25:59 as **
  • A statistical model for assessing genetic susceptibility as a risk factor in multifactorial diseases: lessons from occupational asthma.
    Environ Health Perspect, Vol. 115, No. 2. (February 2007), pp. 231-234.
    by E Demchuk, B Yucesoy, VJ Johnson, M Andrew, A Weston, DR Germolec, CT De Rosa, MI Luster
    posted to no-tag by jyuh on 2008-02-27 15:48:45 as **
  • Ubiquitin-dependent proteolytic control of SUMO conjugates.
    J Biol Chem, Vol. 282, No. 47. (23 November 2007), pp. 34167-34175.
    by K Uzunova, K Göttsche, M Miteva, SR Weisshaar, C Glanemann, M Schnellhardt, M Niessen, H Scheel, K Hofmann, ES Johnson, GJ Praefcke, RJ Dohmen
    posted to no-tag by jyuh on 2008-02-27 06:34:46 as **
  • Uric acid, the metabolic syndrome, and renal disease.
    J Am Soc Nephrol, Vol. 17, No. 12 Suppl 3. (December 2006)
    by P Cirillo, W Sato, S Reungjui, M Heinig, M Gersch, Y Sautin, T Nakagawa, RJ Johnson
    posted to no-tag by jyuh on 2008-02-25 08:37:39 as **
  • Potential role of sugar (fructose) in the epidemic of hypertension, obesity and the metabolic syndrome, diabetes, kidney disease, and cardiovascular disease.
    Am J Clin Nutr, Vol. 86, No. 4. (October 2007), pp. 899-906.
    by RJ Johnson, MS Segal, Y Sautin, T Nakagawa, DI Feig, DH Kang, MS Gersch, S Benner, LG Sánchez-Lozada
    posted to no-tag by jyuh on 2008-02-25 08:34:09 as **
  • Excerpts from the United States Renal Data System 2007 annual data report.
    Am J Kidney Dis, Vol. 51, No. 1 Suppl 1. (January 2008)
    by AJ Collins, R Foley, C Herzog, B Chavers, D Gilbertson, A Ishani, B Kasiske, J Liu, LW Mau, M McBean, A Murray, W St Peter, J Xue, Q Fan, H Guo, Q Li, S Li, S Li, Y Peng, Y Qiu, T Roberts, M Skeans, J Snyder, C Solid, C Wang, E Weinhandl, D Zaun, R Zhang, C Arko, SC Chen, F Dalleska, F Daniels, S Dunning, J Ebben, E Frazier, C Hanzlik, R Johnson, D Sheets, X Wang, B Forrest, E Constantini, S Everson, P Eggers, L Agodoa
    posted to no-tag by jyuh on 2008-02-21 02:01:05 as **
  • The multifaceted and widespread pathology of magnesium deficiency.
    Med Hypotheses, Vol. 56, No. 2. (February 2001), pp. 163-170.
    by S Johnson
    posted to no-tag by jyuh on 2008-02-20 03:04:41 as **
  • Low birth weight is associated with chronic kidney disease only in men
    Kidney Int, Vol. 73, No. 5. (19 December 2007), pp. 637-642.
    by S Li, SC Chen, M Shlipak, G Bakris, PA Mccullough, J Sowers, L Stevens, C Jurkovitz, S Mcfarlane, K Norris, J Vassalotti, MJ Klag, WW Brown, A Narva, D Calhoun, B Johnson, C Obialo, A Whaley-Connell, B Becker, AJ Collins
    posted to no-tag by jyuh on 2008-02-19 09:18:26 as **
  • LDL-cholesterol concentrations: a genome-wide association study.
    Lancet, Vol. 371, No. 9611. (9 February 2008), pp. 483-491.
    by MS Sandhu, DM Waterworth, SL Debenham, E Wheeler, K Papadakis, JH Zhao, K Song, X Yuan, T Johnson, S Ashford, M Inouye, R Luben, M Sims, D Hadley, W McArdle, P Barter, YA Kesäniemi, RW Mahley, R McPherson, SM Grundy, , SA Bingham, KT Khaw, RJ Loos, G Waeber, I Barroso, DP Strachan, P Deloukas, P Vollenweider, NJ Wareham, V Mooser
    posted to lipid gwa by jyuh on 2008-02-18 04:05:40 as **
  • Ethnic differences and treatment trajectories in chronic kidney disease.
    J Health Care Poor Underserved, Vol. 19, No. 1. (2008), pp. 90-102.
    by S Johnson, DE Sidelinger, E Blanco, LA Palinkas, D Macdonald, V Reznik
    posted to no-tag by jyuh on 2008-02-14 09:30:43 as **
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