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kallberg library [79 articles]

Статьи, недавно добавленные в библиотеку kallberg .
  • A Framework for Clustering Uncertain Data Streams
    Data Engineering, 2008. ICDE 2008. IEEE 24th International Conference on (2008), pp. 150-159.
    by CC Aggarwal, PS Yu
    posted to cs594 by kallberg on 2008-08-28 17:52:54 as **
  • Statistical Modeling: The Two Cultures
    Statistical Science, Vol. 16, No. 3. (2001), pp. 199-215.
    by Leo Breiman
    posted to statistics by kallberg on 2008-08-19 11:51:18 as ** along with 6 people EnlightenedDuck mdreid vqv robincha bsilverthorn ulmer
  • Lipid Interaction Networks of Peripheral Membrane Proteins Revealed by Data-Driven Micelle Docking
    Biophys. J., Vol. 94, No. 2. (15 January 2008), pp. 515-524.
    by Felician Dancea, Keiichiro Kami, Michael Overduin
    posted to membrane by kallberg on 2008-08-08 03:59:15 as ** along with 1 person paulschlesinger
  • Docking Phospholipase A2 on Membranes Using Electrostatic Potential-Modulated Spin Relaxation Magnetic Resonance
    Science, Vol. 279, No. 5358. (20 March 1998), pp. 1925-1929.
    by Ying Lin, Robert Nielsen, Diana Murray, Wayne L Hubbell, Colin Mailer, Bruce H Robinson, Michael H Gelb
    posted to membrane by kallberg on 2008-08-08 03:56:02 as **
  • Contrasting Membrane Interaction Mechanisms of AP180 N-terminal Homology (ANTH) and Epsin N-terminal Homology (ENTH) Domains
    J. Biol. Chem., Vol. 278, No. 31. (1 August 2003), pp. 28993-28999.
    by Robert V Stahelin, Fei Long, Brian J Peter, Diana Murray, Pietro De Camilli, Harvey T Mcmahon, Wonhwa Cho
    posted to membrane by kallberg on 2008-08-08 03:55:33 as **
  • Electrostatic interaction of myristoylated proteins with membranes: simple physics, complicated biology
    Structure, Vol. 5, No. 8. (15 August 1997), pp. 985-989.
    by Diana Murray, Nir Ben-Tal, Barry Honig, Stuart Mclaughlin
    posted to membrane by kallberg on 2008-08-08 03:54:57 as **
  • Electrostatic Control of the Membrane Targeting of C2 Domains
    Molecular Cell, Vol. 9, No. 1. (January 2002), pp. 145-154.
    by Diana Murray, Barry Honig
    posted to membrane by kallberg on 2008-08-08 03:54:05 as **
  • Electrostatic Properties of Membranes Containing Acidic Lipids and Adsorbed Basic Peptides: Theory and Experiment
    Biophys. J., Vol. 77, No. 6. (1 December 1999), pp. 3176-3188.
    by Diana Murray, Anna Arbuzova, Gyongyi Hangyas-Mihalyne, Alok Gambhir, Nir Ben-Tal, Barry Honig, Stuart Mclaughlin
    posted to membrane by kallberg on 2008-08-08 03:53:25 as **
  • Membrane Binding of Peptides Containing Both Basic and Aromatic Residues. Experimental Studies with Peptides Corresponding to the Scaffolding Region of Caveolin and the Effector Region of MARCKS
    Biochemistry, Vol. 39, No. 33. (22 August 2000), pp. 10330-10339.
    by A Arbuzova, L Wang, J Wang, G Hangyas-Mihalyne, D Murray, B Honig, S Mclaughlin
    posted to membrane by kallberg on 2008-08-08 03:51:53 as **
  • MARCKS, membranes, and calmodulin: kinetics of their interaction
    Biochimica et Biophysica Acta (BBA) - Reviews on Biomembranes, Vol. 1376, No. 3. (10 November 1998), pp. 369-379.
    by Anna Arbuzova, Diana Murray, Stuart Mclaughlin
    posted to membrane by kallberg on 2008-08-08 03:51:25 as ****
  • PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by GE Tusnády, Z Dosztányi, I Simon
    posted to membran by kallberg on 2008-07-30 01:43:46 as ** along with 2 people chrn sebk
  • Cholesterol and the interaction of proteins with membrane domains.
    Progress in lipid research, Vol. 45, No. 4. (July 2006), pp. 279-294.
    by RM Epand
    posted to membran by kallberg on 2008-07-30 01:43:11 as **
  • Computer modeling of the membrane interaction of FYVE domains.
    Journal of molecular biology, Vol. 328, No. 3. (2 May 2003), pp. 721-736.
    by K Diraviyam, RV Stahelin, W Cho, D Murray
    posted to fyve membran by kallberg on 2008-07-30 01:41:02 as **
  • The glycosylphosphatidylinositol anchor: a complex membrane-anchoring structure for proteins.
    Biochemistry, Vol. 47, No. 27. (8 July 2008), pp. 6991-7000.
    by MG Paulick, CR Bertozzi
    posted to anchor membran by kallberg on 2008-07-30 01:27:43 as ** along with 1 person cerca
  • Membrane binding mechanisms of the PX domains of NADPH oxidase p40phox and p47phox.
    J Biol Chem, Vol. 278, No. 16. (18 April 2003), pp. 14469-14479.
    by RV Stahelin, A Burian, KS Bruzik, D Murray, W Cho
    posted to px by kallberg on 2008-06-19 04:41:22 as **
  • SH3-dependent assembly of the phagocyte NADPH oxidase.
    The Journal of experimental medicine, Vol. 180, No. 6. (1 December 1994), pp. 2011-2015.
    by LC McPhail
    posted to px by kallberg on 2008-06-19 04:39:52 as **
  • Structure and function of the PB1 domain, a protein interaction module conserved in animals, fungi, amoebas, and plants.
    Science's STKE : signal transduction knowledge environment, Vol. 2007, No. 401. (28 August 2007)
    by H Sumimoto, S Kamakura, T Ito
    posted to px by kallberg on 2008-06-19 04:39:23 as **
  • Solution structure of the PX domain, a target of the SH3 domain.
    Nat Struct Biol, Vol. 8, No. 6. (June 2001), pp. 526-530.
    by H Hiroaki, T Ago, T Ito, H Sumimoto, D Kohda
    posted to px by kallberg on 2008-06-19 04:38:08 as ** along with 1 person nigham
  • Supervised machine learning techniques for the classification of metabolic disorders in newborns.
    Bioinformatics (Oxford, England), Vol. 20, No. 17. (22 November 2004), pp. 2985-2996.
    by C Baumgartner, C Böhm, D Baumgartner, G Marini, K Weinberger, B Olgemöller, B Liebl, AA Roscher
    posted to bioe594 boosting svm by kallberg on 2008-06-17 20:50:55 as **
  • Predicting the sub-cellular location of proteins from text using support vector machines.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2002), pp. 374-385.
    by BJ Stapley, LA Kelley, MJ Sternberg
    posted to bioe594 mining text by kallberg on 2008-06-17 20:47:41 as **
  • Recognition of protein/gene names from text using an ensemble of classifiers.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by G Zhou, D Shen, J Zhang, J Su, S Tan
    posted to bioe594 mining text by kallberg on 2008-06-17 20:47:07 as ** along with 2 people and 1 group bundschu johnkork generif_paper
  • Text-mining approaches in molecular biology and biomedicine.
    Drug Discov Today, Vol. 10, No. 6. (15 March 2005), pp. 439-445.
    by M Krallinger, RA Erhardt, A Valencia
    posted to bioe594 mining text by kallberg on 2008-06-17 20:45:15 as ** along with 4 people and 1 group irenas kuhn textoris josepe dbk-lab
  • Predicting genetic regulatory response using classification.
    Bioinformatics (Oxford, England), Vol. 20 Suppl 1 (4 August 2004)
    by M Middendorf, A Kundaje, C Wiggins, Y Freund, C Leslie
    posted to bioe594 boosting tree by kallberg on 2008-06-17 20:44:24 as **
  • Modeling of signal-response cascades using decision tree analysis
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2027-2035.
    by Sampsa Hautaniemi, Sourabh Kharait, Akihiro Iwabu, Alan Wells, Douglas A Lauffenburger
    posted to bioe594 biology systems by kallberg on 2008-06-17 20:43:44 as **
  • A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis
    Bioinformatics, Vol. 21, No. 5. (01 March 2005), pp. 631-643.
    by Alexander Statnikov, Constantin F Aliferis, Ioannis Tsamardinos, Douglas Hardin, Shawn Levy
    posted to bioe594 boosting svm by kallberg on 2008-06-17 20:41:12 as ** along with 6 people chad_davis archroad dimatura srp33 slevy03 vmsr
  • Molecular classification of multiple tumor types.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by CH Yeang, S Ramaswamy, P Tamayo, S Mukherjee, RM Rifkin, M Angelo, M Reich, E Lander, J Mesirov, T Golub
    posted to bioe594 boosting svm by kallberg on 2008-06-17 20:40:39 as ** along with 1 person ggrot
  • Ensemble machine learning on gene expression data for cancer classification.
    Applied bioinformatics, Vol. 2, No. 3 Suppl. (2003)
    by AC Tan, D Gilbert
    posted to bioe594 boosting ensemble by kallberg on 2008-06-17 20:37:04 as **
  • Joint classifier and feature optimization for comprehensive cancer diagnosis using gene expression data.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 11, No. 2-3. (2004), pp. 227-242.
    by B Krishnapuram, L Carin, AJ Hartemink
    posted to bayseian bioe594 svm by kallberg on 2008-06-17 20:36:14 as **
  • Prediction of protein subcellular locations using fuzzy k-NN method.
    Bioinformatics (Oxford, England), Vol. 20, No. 1. (1 January 2004), pp. 21-28.
    by Y Huang, Y Li
    posted to bioe594 nearest neighbour by kallberg on 2008-06-17 20:34:49 as **
  • A two-stage classifier for identification of protein-protein interface residues.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by C Yan, D Dobbs, V Honavar
    posted to bayseian bioe594 svm by kallberg on 2008-06-17 20:34:08 as ** along with 1 person bicko
  • Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments.
    Journal of molecular biology, Vol. 247, No. 1. (17 March 1995), pp. 11-15.
    by AA Salamov, VV Solovyev
    posted to bioe594 nearest neighbour by kallberg on 2008-06-17 20:33:28 as **
  • Protein beta-turn prediction using nearest-neighbor method.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 40-44.
    by S Kim
    posted to bioe594 nearest neighbour by kallberg on 2008-06-17 20:32:58 as ** along with 1 person ujh
  • A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis.
    Bioinformatics (Oxford, England), Vol. 18, No. 2. (February 2002), pp. 235-243.
    by M Sebban, I Mokrousov, N Rastogi, C Sola
    posted to bioe594 dna tree by kallberg on 2008-06-17 20:29:08 as **
  • Predicting the phenotypic effects of non-synonymous single nucleotide polymorphisms based on support vector machines
    BMC Bioinformatics, Vol. 8 (16 November 2007), 450.
    by Jian Tian, Ningfeng Wu, Xuexia Guo, Jun Guo, Juhua Zhang, Yunliu Fan
    posted to bioe594 forrest random svm by kallberg on 2008-06-17 20:28:33 as ** along with 1 person jyuh
  • A computational approach to identify genes for functional RNAs in genomic sequences
    Nucl. Acids Res., Vol. 29, No. 19. (1 October 2001), pp. 3928-3938.
    by Richard J Carter, Inna Dubchak, Stephen R Holbrook
    posted to bioe594 neurale rna svm by kallberg on 2008-06-17 20:23:37 as ** along with 3 people and 2 groups marcius arcticrasta mtagaya BioinfoCIPF SGU-CIPF
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to bioe594 feature gene selection by kallberg on 2008-06-17 20:22:28 as ** along with 17 people and 2 groups BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards Evangelia isimpson carlk srp33 frohike kdl Bioinformatics
  • Computational Gene Prediction Using Multiple Sources of Evidence
    Genome Res., Vol. 14, No. 1. (1 January 2004), pp. 142-148.
    by Jonathan E Allen, Mihaela Pertea, Steven L Salzberg
    posted to bioe594 feature selection by kallberg on 2008-06-17 20:20:20 as **
  • Feature selection for splice site prediction: a new method using EDA-based feature ranking.
    BMC Bioinformatics, Vol. 5 (21 May 2004)
    by Y Saeys, S Degroeve, D Aeyels, P Rouzé, Y Van de Peer
    posted to bioe594 feature selection by kallberg on 2008-06-17 20:19:47 as ** along with 1 person gpalidwor
  • Splice site identification by idlBNs.
    Bioinformatics (Oxford, England), Vol. 20 Suppl 1 (4 August 2004)
    by R Castelo, R Guigó
    posted to bayseian bioe594 site splice by kallberg on 2008-06-17 20:18:32 as **
  • Locating protein coding regions in human DNA using a decision tree algorithm.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 2, No. 3. (1995), pp. 473-485.
    by S Salzberg
    posted to bioe594 gene tree by kallberg on 2008-06-17 20:17:54 as **
  • A kinetic molecular model of the reversible unfolding and refolding of titin under force extension.
    Biophys J, Vol. 77, No. 3. (September 1999), pp. 1306-1315.
    by B Zhang, G Xu, JS Evans
    posted to smd unfolding unfolding-pathway by kallberg on 2008-04-01 17:26:02 as **
  • Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation.
    Biophys J, Vol. 75, No. 2. (August 1998), pp. 662-671.
    by H Lu, B Isralewitz, A Krammer, V Vogel, K Schulten
    posted to immunoglobin smd unfolding by kallberg on 2008-04-01 17:24:50 as ** along with 3 people baaden ltrabuco choonpeng
  • The key event in force-induced unfolding of Titin's immunoglobulin domains.
    Biophys J, Vol. 79, No. 1. (July 2000), pp. 51-65.
    by H Lu, K Schulten
    posted to protein-engeenering smd unfolding by kallberg on 2008-04-01 17:24:06 as **
  • Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering.
    Prog Biophys Mol Biol, Vol. 74, No. 1-2. (2000), pp. 63-91.
    by M Carrion-Vazquez, AF Oberhauser, TE Fisher, PE Marszalek, H Li, JM Fernandez
    posted to protein-engeenering smd unfolding by kallberg on 2008-04-01 17:23:18 as ***
  • Oxidative folding competes with mitochondrial import of the small Tim proteins.
    Biochem J (13 December 2007)
    by Bruce Morgan, Hui Lu
    posted to no-tag by kallberg on 2008-03-07 19:19:52 as **
  • Solvent molecules bridge the mechanical unfolding transition state of a protein.
    Proc Natl Acad Sci U S A, Vol. 105, No. 9. (4 March 2008), pp. 3185-3190.
    by L Dougan, G Feng, H Lu, JM Fernandez
    posted to smd solvent unfolding by kallberg on 2008-03-07 19:19:40 as *** along with 1 person choonpeng
  • Protein ranking by semi-supervised network propagation.
    BMC Bioinformatics, Vol. 7 Suppl 1 (2006)
    by J Weston, R Kuang, C Leslie, WS Noble
    posted to protein ranking semi by kallberg on 2008-02-26 22:59:19 as **
  • Feature selection and transduction for prediction of molecular bioactivity for drug design.
    Bioinformatics, Vol. 19, No. 6. (12 April 2003), pp. 764-771.
    by J Weston, F Pérez-Cruz, O Bousquet, O Chapelle, A Elisseeff, B Schölkopf
    posted to drug feature siscovery slection by kallberg on 2008-02-26 22:54:51 as ** along with 1 person bioinfo
  • Semi-supervised protein classification using cluster kernels.
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3241-3247.
    by J Weston, C Leslie, E Ie, D Zhou, A Elisseeff, WS Noble
    posted to classification protein semi-supervised by kallberg on 2008-02-26 22:53:59 as *** along with 4 people chrn filippone kozaki amirsaffari
  • SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.
    BMC Bioinformatics, Vol. 8 Suppl 4 (2007)
    by I Melvin, E Ie, R Kuang, J Weston, WN Stafford, C Leslie
    posted to fold multi-class protein svm by kallberg on 2008-02-26 22:52:41 as **
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