Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type.

by: R Grantham, C Gautier, M Gouy

Nucleic acids research, Vol. 8, No. 9. (10 May 1980), pp. 1893-1912.

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Abstract

The poor printing of our previous Figure 2 (1) is corrected. Codon usage in mRNA sequences just published is also given. A new correspondence analysis is done, based on simultaneous comparison in all mRNA of use of the 61 codons. This analysis reinforces our claim that most genes in a genome, or genome type, have the same coding strategy; that is, they show similar choices among synonymous codons, or among degenerate bases (2). Like analysis on frequency variation in the amino acids coded reveals an entirely different pattern.

@article{GGG80, abstract = {The poor printing of our previous Figure 2 (1) is corrected. Codon usage in mRNA sequences just published is also given. A new correspondence analysis is done, based on simultaneous comparison in all mRNA of use of the 61 codons. This analysis reinforces our claim that most genes in a genome, or genome type, have the same coding strategy; that is, they show similar choices among synonymous codons, or among degenerate bases (2). Like analysis on frequency variation in the amino acids coded reveals an entirely different pattern.}, author = {Grantham, R. and Gautier, C. and Gouy, M. }, citeulike-article-id = {2941783}, issn = {0305-1048}, journal = {Nucleic acids research}, keywords = {hgt}, month = {May}, number = {9}, pages = {1893--1912}, posted-at = {2008-06-29 16:20:45}, priority = {2}, title = {Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/6159596}, volume = {8}, year = {1980} }

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TY - JOUR ID - GGG80 L3 - citeulike-article-id:2941783 TI - Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type. JF - Nucleic acids research VL - 8 IS - 9 SP - 1893 EP - 1912 SN - 0305-1048 N2 - The poor printing of our previous Figure 2 (1) is corrected. Codon usage in mRNA sequences just published is also given. A new correspondence analysis is done, based on simultaneous comparison in all mRNA of use of the 61 codons. This analysis reinforces our claim that most genes in a genome, or genome type, have the same coding strategy; that is, they show similar choices among synonymous codons, or among degenerate bases (2). Like analysis on frequency variation in the amino acids coded reveals an entirely different pattern. KW - hgt AU - Grantham, R AU - Gautier, C AU - Gouy, M PY - 1980/05/10/ UR - http://view.ncbi.nlm.nih.gov/pubmed/6159596 ER -

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