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kengg library [681 articles]

Статьи, недавно добавленные в библиотеку kengg .
  • An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.
    BMC systems biology, Vol. 2 (2008)
    by KE Thum, MJ Shin, RA Gutiérrez, I Mukherjee, MS Katari, D Nero, D Shasha, GM Coruzzi
    posted to systems bioinformatics by kengg on 2008-07-26 15:37:56 as ** along with 2 people Borelli lptolik
  • Identification of the motifs within the tobacco mosaic virus 5'-leader responsible for enhancing translation
    Nucl. Acids Res., Vol. 20, No. 17. (11 September 1992), pp. 4631-4638.
    by Daniel R Gallie, Virginia Walbot
    posted to translation hint by kengg on 2008-07-25 20:42:37 as **
  • An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 1049-1061.
    by Jonghwan Kim, Jianlin Chu, Xiaohua Shen, Jianlong Wang, Stuart H Orkin
    posted to genome-wide es chip by kengg on 2008-07-24 22:43:13 as ** along with 4 people inesdesantiago jyuh tmmurali maralena
  • A new method for isolating large quantities of Arabidopsis trichomes for transcriptome, cell wall and other types of analyses.
    The Plant journal : for cell and molecular biology (4 July 2008)
    by M David Marks, Lissete Betancur, Edward Gilding, Fang Chen, Stefan Bauer, Jonathan P P Wenger, Richard A A Dixon, Candace H H Haigler
    posted to trichome hint by kengg on 2008-07-23 17:26:02 as **
  • Quantitative analysis of heterogeneous spatial distribution of Arabidopsis leaf trichomes using micro X-ray computed tomography.
    The Plant journal : for cell and molecular biology (4 July 2008)
    by Eli Kaminuma, Takeshi Yoshizumi, Takuji Wada, Minami Matsui, Tetsuro Toyoda
    posted to trichome by kengg on 2008-07-23 17:25:20 as **
  • Comprehensive analysis of single-repeat R3 MYB proteins in epidermal cell patterning and their transcriptional regulation in Arabidopsis
    BMC Plant Biology, Vol. 8 (21 July 2008), 81.
    by Shucai Wang, Leah Hubbard, Ying Chang, Jianjun Guo, John Schiefelbein, Jin-Gui Chen
    posted to trichome myb by kengg on 2008-07-23 17:23:15 as **
  • Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer
    Cancer Res, Vol. 62, No. 15. (1 August 2002), pp. 4427-4433.
    by Daniel R Rhodes, Terrence R Barrette, Mark A Rubin, Debashis Ghosh, Arul M Chinnaiyan
    posted to statics microarray by kengg on 2008-07-23 13:57:57 as ** along with 4 people and 1 group srp33 hawkeyehammer ugengma waghsk Indigene
  • A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy
    BMC Genomics, Vol. 9 (26 February 2008), 98.
    by Xiangrong Kong, Valeria Mas, Kellie J Archer
    posted to statics microarray by kengg on 2008-07-23 13:55:19 as ** along with 2 people jyuh jfr
  • The evolution of plant regulatory networks: what Arabidopsis cannot say for itself.
    Current opinion in plant biology, Vol. 10, No. 6. (December 2007), pp. 653-659.
    by J Nardmann, W Werr
    posted to tfs review network maize homeodomain arabidopsis by kengg on 2008-07-22 21:25:08 as ** along with 2 people Borelli carlk
  • Control of shoot cell fate: beyond homeoboxes.
    The Plant cell, Vol. 13, No. 4. (April 2001), pp. 733-738.
    by M Tsiantis
    posted to review plant homeodomain by kengg on 2008-07-22 21:17:06 as ** along with 1 person icq242500260
  • The true story of the HD-Zip family.
    Trends in plant science, Vol. 12, No. 9. (September 2007), pp. 419-426.
    by FD Ariel, PA Manavella, CA Dezar, RL Chan
    posted to review homeodomain by kengg on 2008-07-21 18:42:09 as ** along with 1 person icq242500260
  • Roles of jumonji and jumonji family genes in chromatin regulation and development.
    Developmental dynamics : an official publication of the American Association of Anatomists, Vol. 235, No. 9. (September 2006), pp. 2449-2459.
    by T Takeuchi, Y Watanabe, T Takano-Shimizu, S Kondo
    posted to review jmj by kengg on 2008-07-21 17:32:44 as **
  • JmjC-domain-containing proteins and histone demethylation.
    Nature reviews. Genetics, Vol. 7, No. 9. (September 2006), pp. 715-727.
    by RJ Klose, EM Kallin, Y Zhang
    posted to review methylation jmj histone by kengg on 2008-07-21 17:26:28 as **
  • POPP the question: what do LEA proteins do?
    Trends in plant science, Vol. 9, No. 1. (January 2004), pp. 13-17.
    by MJ Wise, A Tunnacliffe
    posted to seed review embryogenesis by kengg on 2008-07-21 03:40:50 as **
  • Flavonoid accumulation in Arabidopsis repressed in lignin synthesis affects auxin transport and plant growth.
    The Plant cell, Vol. 19, No. 1. (January 2007), pp. 148-162.
    by S Besseau, L Hoffmann, P Geoffroy, C Lapierre, B Pollet, M Legrand
    posted to metabolite hint flavonoid auxin by kengg on 2008-07-17 03:21:54 as **
  • EST analysis of hop glandular trichomes identifies an O-methyltransferase that catalyzes the biosynthesis of xanthohumol.
    The Plant cell, Vol. 20, No. 1. (January 2008), pp. 186-200.
    by J Nagel, LK Culley, Y Lu, E Liu, PD Matthews, JF Stevens, JE Page
    posted to trichome metabolite flavonoid by kengg on 2008-07-16 02:52:34 as **
  • Flavonoid accumulation patterns of transparent testa mutants of arabidopsis.
    Plant physiology, Vol. 126, No. 2. (June 2001), pp. 536-548.
    by WA Peer, DE Brown, BW Tague, GK Muday, L Taiz, AS Murphy
    posted to flavonoid by kengg on 2008-07-14 20:08:43 as **
  • The Arabidopsis root hair cell wall formation mutant lrx1 is suppressed by mutations in the RHM1 gene encoding a UDP-L-rhamnose synthase.
    The Plant cell, Vol. 18, No. 7. (July 2006), pp. 1630-1641.
    by A Diet, B Link, GJ Seifert, B Schellenberg, U Wagner, M Pauly, WD Reiter, C Ringli
    posted to root metabolite flavonoid enzyme by kengg on 2008-07-14 17:52:15 as **
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to tfs network high-throughput genome-wide chip bioinformatics by kengg on 2008-07-14 16:09:02 as ** along with 3 people inesdesantiago caseybrown jjray
  • CressExpress: A tool for large-scale mining of expression data from Arabidopsis thaliana.
    Plant physiology (8 May 2008)
    by Vinodh Srinivasasainagendra, Grier Page, Tapan Mehta, Issa Coulibaly, Ann E E Loraine
    posted to coexpression bioinformatics by kengg on 2008-07-13 02:54:49 as ** along with 2 people talponer imtechnology
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to network bioinformatics by kengg on 2008-07-12 21:27:04 as ** along with 15 people and 1 group roys lptolik MatthiasReimann jmuhlich AbnerCYH royerloic tmmurali stajich chad_davis renatomilani askrajiv Borelli nuin reyez Ema Berkeley Mycology
  • The transparent testa4 Mutation Prevents Flavonoid Synthesis and Alters Auxin Transport and the Response of Arabidopsis Roots to Gravity and Light
    Plant Cell, Vol. 16, No. 5. (1 May 2004), pp. 1191-1205.
    by Charles S Buer, Gloria K Muday
    posted to root metabolite flavonoid auxin by kengg on 2008-07-12 14:55:47 as **
  • Nuclear localization of flavonoid enzymes in Arabidopsis.
    J Biol Chem, Vol. 280, No. 25. (24 June 2005), pp. 23735-23740.
    by DE Saslowsky, U Warek, BS Winkel
    posted to nucleosome metabolite hint flavonoid by kengg on 2008-07-12 14:45:21 as **
  • Flavonoids are differentially taken up and transported long distances in Arabidopsis.
    Plant physiology, Vol. 145, No. 2. (October 2007), pp. 478-490.
    by CS Buer, GK Muday, MA Djordjevic
    posted to transport metabolite flavonoid by kengg on 2008-07-12 14:43:00 as **
  • Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis.
    The EMBO journal, Vol. 19, No. 22. (15 November 2000), pp. 6150-6161.
    by H Jin, E Cominelli, P Bailey, A Parr, F Mehrtens, J Jones, C Tonelli, B Weisshaar, C Martin
    posted to stress myb metabolite by kengg on 2008-07-12 02:03:28 as **
  • Systems biology in drug discovery
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1253-1259.
    by Eugene C Butcher, Ellen L Berg, Eric J Kunkel
    posted to systems small-molecule review by kengg on 2008-07-07 18:51:54 as ** along with 5 people and 3 groups rhem1224 tny karthikram mingzhi maburkitt TCR_Signaling Neoscientists SysbioMPI-TCells
  • Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes
    Plant Methods, Vol. 4, No. 1. (2008)
    by Andrew Dare, Robert Schaffer, Kui L Wang, Andrew Allan, Roger Hellens
    posted to tfs myb microarray flavonoid bioinformatics arabidopsis by kengg on 2008-07-07 01:35:25 as **
  • Functional analysis of a predicted flavonol synthase gene family in Arabidopsis.
    Plant physiology (8 May 2008)
    by Daniel K K Owens, Anne B B Alerding, Kevin C C Crosby, Aloka B B Bandara, James H H Westwood, Brenda S J S Winkel
    posted to root flavonoid by kengg on 2008-07-06 04:23:13 as **
  • AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis.
    The Plant journal : for cell and molecular biology (4 June 2008)
    by Kyoko Matsui, Yoshimi Umemura, Masaru Ohme-Takagi
    posted to trichome myb flavonoid by kengg on 2008-07-04 22:26:23 as **
  • MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana.
    The Plant journal : for cell and molecular biology (4 June 2008)
    by Dubos Christian, Le Gourrierec G José, Baudry Antoine, Huep Gunnar, Lanet Elodie, Debeaujon Isabelle, Routaboul Jean-Marc, Alboresi Alessandro, Weisshaar Bernd, Lepiniec Loïc
    posted to trichome myb flavonoid by kengg on 2008-07-04 22:07:21 as **
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
    posted to nucleosome histone epigenetics chip by kengg on 2008-06-30 14:25:01 as ** along with 5 people inesdesantiago bpcusack caseybrown djkt kambiz
  • Distinct and overlapping roles of single-repeat MYB genes in root epidermal patterning.
    Developmental biology, Vol. 311, No. 2. (15 November 2007), pp. 566-578.
    by M Simon, MM Lee, Y Lin, L Gish, J Schiefelbein
    posted to trichome root by kengg on 2008-06-29 18:43:06 as ** along with 1 person balicea
  • The beginning of the end for microarrays?
    Nat Meth, Vol. 5, No. 7. (July 2008), pp. 585-587.
    by Jay Shendure
    posted to review microarray high-throughput by kengg on 2008-06-28 17:21:05 as ** along with 4 people ChrisEvelo myourshaw marck megraw
  • The Arabidopsis PILZ group genes encode tubulin-folding cofactor orthologs required for cell division but not cell growth.
    Genes & development, Vol. 16, No. 8. (15 April 2002), pp. 959-971.
    by K Steinborn, C Maulbetsch, B Priester, S Trautmann, T Pacher, B Geiges, F Küttner, L Lepiniec, YD Stierhof, H Schwarz, G Jürgens, U Mayer
    posted to trichome kis by kengg on 2008-06-27 01:00:56 as **
  • The Modified Flavonol Glycosylation Profile in the Arabidopsis rol1 Mutants Results in Alterations in Plant Growth and Cell Shape Formation.
    The Plant cell (20 June 2008)
    by Christoph Ringli, Laurent Bigler, Benjamin M M Kuhn, Ruth-Maria M Leiber, Anouck Diet, Diana Santelia, Beat Frey, Stephan Pollmann, Markus Klein
    posted to trichome hint flavo by kengg on 2008-06-24 19:14:48 as **
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to yeast tfs systems network coexpression by kengg on 2008-06-19 21:54:39 as ** along with 9 people caseybrown djkt marck roys jyuh realzhang tmmurali ptrobajo maralena
  • Systems biology: Merging data means more powerful networks
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 501-501.
    by Patrick Goymer
    posted to systems review network coexpression by kengg on 2008-06-19 21:51:05 as ** along with 3 people marck renatomilani reyez
  • Histone Modifications and Expression of Light Regulated Genes in Arabidopsis Are Cooperatively Influenced by Changing Light Conditions.
    Plant physiology (11 June 2008)
    by Lan Guo, Junli Zhou, Axel A A Elling, Jean-Benoit F B Charron, Xing Wang W Deng
    posted to nucleosome light histone chip by kengg on 2008-06-15 18:07:57 as **
  • Two-Dimensional Patterning by a Trapping/Depletion Mechanism: The Role of TTG1 and GL3 in Arabidopsis Trichome Formation
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e141.
    by Daniel Bouyer, Florian Geier, Friedrich Kragler, Arp Schnittger, Martina Pesch, Katja Wester, Rachappa Balkunde, Jens Timmer, Christian Fleck, Martin Hülskamp
    posted to trichome tfs by kengg on 2008-06-14 02:07:09 as *****
  • Transcription factors for predictive plant metabolic engineering: are we there yet?
    Current opinion in biotechnology, Vol. 19, No. 2. (April 2008), pp. 138-144.
    by E Grotewold
    posted to tfs review network metabolite by kengg on 2008-06-08 20:30:57 as **
  • How to succeed in science: a concise guide for young biomedical scientists. Part I: taking the plunge
    Nat Rev Mol Cell Biol, Vol. 9, No. 5. (May 2008), pp. 413-416.
    by Jonathan W Yewdell
    posted to review hint by kengg on 2008-05-30 22:12:48 as ** along with 9 people and 1 group sci91078 phoenixzxl sobolevnrm iramjohn tayzerhouse05 jyuh bmaust GeeSharpMinor lp2 baker-group
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to network coexpression bioinformatics by kengg on 2008-05-30 16:02:56 as ** along with 36 people lfriedl sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to review network bioinformatics by kengg on 2008-05-30 15:59:29 as ** along with 53 people and 3 groups jdiezperezj mjoach ale rrbarb HugoMarcelo tharris rsantana laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu FAB-lab Bioinformatics baker-group
  • Histone Acetylation and Chromatin Remodeling Are Required for UV-B-Dependent Transcriptional Activation of Regulated Genes in Maize
    Plant Cell, Vol. 20, No. 4. (1 April 2008), pp. 827-842.
    by Paula Casati, Mabel Campi, Feixia Chu, Nagi Suzuki, David Maltby, Shenheng Guan, Alma L Burlingame, Virginia Walbot
    posted to uv stress maize dnasei chromatin chip by kengg on 2008-05-30 02:32:38 as **
  • Roles of the GLABROUS1 and TRANSPARENT TESTA GLABRA Genes in Arabidopsis Trichome Development.
    The Plant cell, Vol. 6, No. 8. (August 1994), pp. 1065-1076.
    by J. C. C Larkin, D. G. G Oppenheimer, A. M. M Lloyd, E. T. T Paparozzi, M. D. D Marks
    posted to trichome by kengg on 2008-05-28 20:38:31 as **
  • Large-scale analysis of the GRAS gene family in Arabidopsis thaliana
    Plant Molecular Biology
    by Mi-Hyun Lee, Bohye Kim, Sang-Kee Song, Jung-Ok Heo, Nan-Ie Yu, Shin Lee, Miran Kim, Dong Kim, Sung Sohn, Chae Lim, Kwang Chang, Myeong Lee, Jun Lim
    posted to scarecrow by kengg on 2008-05-28 15:09:48 as **
  • Nongenetic Individuality in the Host–Phage Interaction
    PLoS Biology, Vol. 6, No. 5. (1 May 2008), e120.
    by Sivan Pearl, Chana Gabay, Roy Kishony, Amos Oppenheim, Nathalie Q Balaban
    posted to systems by kengg on 2008-05-28 14:30:22 as ** along with 1 person tmmurali
  • Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks.
    BMC Genomics, Vol. 7 (2006)
    by MR Carlson, B Zhang, Z Fang, PS Mischel, S Horvath, SF Nelson
    posted to coexpression bioinformatics by kengg on 2008-05-24 03:19:51 as ** along with 2 people and 1 group xwbcn jeremymiller GeschwindLab
  • Gene co-expression network topology provides a framework for molecular characterization of cellular state
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2242-2250.
    by Scott L Carter, Christian M Brechbuhler, Michael Griffin, Andrew T Bond
    posted to coexpression bioinformatics by kengg on 2008-05-24 03:18:32 as **
  • Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
    Plant Methods, Vol. 3 (24 September 2007), 11.
    by Max Haring, Sascha Offermann, Tanja Danker, Ina Horst, Christoph Peterhaensel, Maike Stam
    posted to protocol chip by kengg on 2008-05-21 17:40:12 as ** along with 2 people vega jyuh
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