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kieran101 library [249 articles]

Статьи, недавно добавленные в библиотеку kieran101 .
  • The genome-wide distribution of background linkage disequilibrium in a population isolate
    Hum. Mol. Genet., Vol. 10, No. 5. (1 March 2001), pp. 545-551.
    by Susan K Service, Roel A Ophoff, Nelson B Freimer
    posted to phylogenetics by kieran101 on 2008-08-12 14:11:54 as **
  • Characterization of conserved motifs in HIV-1 Vif required for APOBEC3G and APOBEC3F interaction.
    Journal of molecular biology, Vol. 381, No. 4. (12 September 2008), pp. 1000-1011.
    by Z He, W Zhang, G Chen, R Xu, XF Yu
    posted to apobec vif by kieran101 on 2008-08-12 11:42:39 as **
  • HIV1 Vpr arrests the cell cycle by recruiting DCAF1/VprBP, a receptor of the Cul4-DDB1 ubiquitin ligase.
    Cell Cycle, Vol. 6, No. 2. (January 2007), pp. 182-188.
    by E Le Rouzic, N Belaïdouni, E Estrabaud, M Morel, JC Rain, C Transy, F Margottin-Goguet
    posted to ubiquitin vpr by kieran101 on 2008-08-12 10:35:52 as ** along with 1 person DNAReplication
  • Lentiviral Vpr usurps Cul4-DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycle.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 28. (10 July 2007), pp. 11778-11783.
    by K Hrecka, M Gierszewska, S Srivastava, L Kozaczkiewicz, SK Swanson, L Florens, MP Washburn, J Skowronski
    posted to ubiquitin vpr by kieran101 on 2008-08-12 10:35:34 as **
  • LC3, an autophagosome marker, can be incorporated into protein aggregates independent of autophagy: caution in the interpretation of LC3 localization.
    Autophagy, Vol. 3, No. 4. (g 2007), pp. 323-328.
    by A Kuma, M Matsui, N Mizushima
    posted to autophagy techniques by kieran101 on 2008-07-31 12:22:17 as **
  • Non-autophagic GFP-LC3 puncta induced by saponin and other detergents.
    Autophagy, Vol. 3, No. 6. (c 2007), pp. 586-590.
    by IA Ciechomska, AM Tolkovsky
    posted to autophagy techniques by kieran101 on 2008-07-31 12:22:09 as **
  • Functional domain organization of human APOBEC3G.
    Virology (17 July 2008)
    by Barry D D Gooch, Bryan R R Cullen
    posted to apobec by kieran101 on 2008-07-23 14:09:01 as **
  • The dynamics of autophagy visualized in live cells: from autophagosome formation to fusion with endo/lysosomes.
    Autophagy, Vol. 1, No. 1. (April 2005), pp. 23-36.
    by ET Bampton, CG Goemans, D Niranjan, N Mizushima, AM Tolkovsky
    posted to autophagy techniques by kieran101 on 2008-07-22 12:06:33 as **
  • Small molecules enhance autophagy and reduce toxicity in Huntington's disease models
    Nat Chem Biol, Vol. 3, No. 6. (June 2007), pp. 331-338.
    by Sovan Sarkar, Ethan O Perlstein, Sara Imarisio, Sandra Pineau, Axelle Cordenier, Rebecca L Maglathlin, John A Webster, Timothy A Lewis, Cahir J O'Kane, Stuart L Schreiber, David C Rubinsztein
    posted to autophagy by kieran101 on 2008-07-22 12:04:37 as **
  • notes The Vif accessory protein alters the cell cycle of human immunodeficiency virus type 1 infected cells.
    Virology, Vol. 359, No. 2. (15 March 2007), pp. 243-252.
    by J Wang, JM Shackelford, CR Casella, DK Shivers, EL Rapaport, B Liu, XF Yu, TH Finkel
    posted to vif by kieran101 on 2008-07-21 16:57:40 as **
  • The Vif and Vpr accessory proteins independently cause HIV-1-induced T cell cytopathicity and cell cycle arrest.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 9. (28 February 2006), pp. 3369-3374.
    by K Sakai, J Dimas, MJ Lenardo
    posted to vif vpr by kieran101 on 2008-07-21 16:53:45 as **
  • The green fluorescent protein.
    Annu Rev Biochem, Vol. 67 (1998), pp. 509-544.
    by RY Tsien
    posted to review techniques by kieran101 on 2008-07-11 20:53:42 as ** along with 5 people and 1 group dark_innocent eeruowl bethbromley austin jonsta247 neurolit
  • notes "HIV-1 Vif induces cell cycle delay via recruitment of the same E3 ubiquitin ligase complex that targets APOBEC3 proteins for degradation"
    Journal of virology (2 July 2008)
    by Jason L L Dehart, Alberto Bosque, Reuben Harris, Vicente Planelles
    posted to apobec ubiquitin vif by kieran101 on 2008-07-11 13:06:16 as **
  • Complete genomic sequence and mass spectrometric analysis of highly diverse, atypical Bacillus thuringiensis phage 0305phi8-36.
    Virology, Vol. 368, No. 2. (25 November 2007), pp. 405-421.
    by JA Thomas, SC Hardies, M Rolando, SJ Hayes, K Lieman, CA Carroll, ST Weintraub, P Serwer
    posted to sequencing by kieran101 on 2008-07-10 10:35:30 as **
  • Genome analysis of phage JS98 defines a fourth major subgroup of T4-like phages in Escherichia coli.
    Journal of bacteriology, Vol. 189, No. 22. (November 2007), pp. 8206-8214.
    by S Zuber, C Ngom-Bru, C Barretto, A Bruttin, H Brüssow, E Denou
    posted to sequencing by kieran101 on 2008-07-10 10:35:06 as **
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
    posted to sequencing by kieran101 on 2008-07-10 10:30:22 as ** along with 23 people and 5 groups bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin azazello beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
  • Pyrosequencing sheds light on DNA sequencing.
    Genome Res, Vol. 11, No. 1. (January 2001), pp. 3-11.
    by M Ronaghi
    posted to sequencing by kieran101 on 2008-07-10 10:29:57 as ** along with 5 people and 1 group tpreeprem mariakmejia darioacha balicea bozdagd gatech-compgenomics
  • A sequencing method based on real-time pyrophosphate.
    Science, Vol. 281, No. 5375. (17 July 1998)
    by M Ronaghi, M Uhlén, P Nyrén
    posted to sequencing by kieran101 on 2008-07-10 10:29:45 as ** along with 2 people and 1 group tpreeprem bozdagd gatech-compgenomics
  • Large-scale pyrosequencing of synthetic DNA: a comparison with results from Sanger dideoxy sequencing.
    Electrophoresis, Vol. 27, No. 15. (August 2006), pp. 3042-3047.
    by B Gharizadeh, ZS Herman, RG Eason, O Jejelowo, N Pourmand
    posted to sequencing by kieran101 on 2008-07-10 10:29:29 as **
  • The Human Immunodeficiency Virus Type 1 Vif Protein Reduces Intracellular Expression and Inhibits Packaging of APOBEC3G (CEM15), a Cellular Inhibitor of Virus Infectivity
    J. Virol., Vol. 77, No. 21. (1 November 2003), pp. 11398-11407.
    by Sandra Kao, Mohammad A Khan, Eri Miyagi, Ron Plishka, Alicia Buckler-White, Klaus Strebel
    posted to apobec vif by kieran101 on 2008-07-08 20:30:33 as **
  • Further Investigation of Simian Immunodeficiency Virus Vif Function in Human Cells
    J. Virol., Vol. 78, No. 21. (1 November 2004), pp. 12041-12046.
    by Nathan C Gaddis, Ann M Sheehy, Muneer K Ahmad, Chad M Swanson, Kate N Bishop, Brigitte E Beer, Preston A Marx, Feng Gao, Frederic Bibollet-Ruche, Beatrice H Hahn, Michael H Malim
    posted to vif by kieran101 on 2008-07-08 20:16:30 as **
  • From the editors
    Nat Rev Genet, Vol. 7, No. 10. (October 2006), pp. 737-737.
    posted to modelling techniques by kieran101 on 2008-07-08 13:53:52 as **
  • A tutorial on statistical methods for population association studies
    Nature Reviews Genetics, Vol. 7, No. 10., pp. 781-791.
    by David J Balding
    posted to modelling techniques by kieran101 on 2008-07-08 13:47:20 as ** along with 6 people and 1 group jyuh jermth giovanni joepickrell dbgrant jo_davies GeschwindLab
  • HIV-1 subtype B protease and reverse transcriptase amino acid covariation.
    PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007)
    by SY Rhee, TF Liu, SP Holmes, RW Shafer
    posted to modelling protease rt techniques by kieran101 on 2008-07-08 11:47:17 as ** along with 1 person cjeans
  • LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
    The EMBO journal, Vol. 19, No. 21. (1 November 2000), pp. 5720-5728.
    by Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori
    posted to autophagy techniques by kieran101 on 2008-07-08 09:49:55 as **
  • How to interpret LC3 immunoblotting.
    Autophagy, Vol. 3, No. 6. (c 2007), pp. 542-545.
    by N Mizushima, T Yoshimori
    posted to autophagy techniques by kieran101 on 2008-07-08 09:35:25 as **
  • LC3 and Autophagy.
    Methods in molecular biology (Clifton, N.J.), Vol. 445 (2008), pp. 77-88.
    by I Tanida, T Ueno, E Kominami
    posted to autophagy techniques by kieran101 on 2008-07-08 09:34:14 as **
  • Lysosomal turnover, but not a cellular level, of endogenous LC3 is a marker for autophagy.
    Autophagy, Vol. 1, No. 2. (July 2005), pp. 84-91.
    by I Tanida, N Minematsu-Ikeguchi, T Ueno, E Kominami
    posted to autophagy techniques by kieran101 on 2008-07-08 09:32:56 as **
  • A novel assay to study autophagy: regulation of autophagosome vacuole size by amino acid deprivation.
    Journal of cell science, Vol. 114, No. Pt 20. (October 2001), pp. 3619-3629.
    by DB Munafó, MI Colombo
    posted to autophagy techniques by kieran101 on 2008-07-08 09:30:53 as **
  • Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?
    Protein Eng, Vol. 7, No. 3. (March 1994), pp. 349-358.
    by IN Shindyalov, NA Kolchanov, C Sander
    posted to modelling structure by kieran101 on 2008-07-08 09:24:27 as ** along with 2 people gbart nirfriedman
  • Utilizing flow cytometry to monitor autophagy in living mammalian cells.
    Autophagy, Vol. 4, No. 5. (t 2008), pp. 621-628.
    by E Shvets, E Fass, Z Elazar
    posted to autophagy techniques by kieran101 on 2008-07-08 09:21:33 as **
  • Molecular Analysis of HIV Type 1 vif Sequences from Cape Town, South Africa
    AIDS Research and Human Retroviruses, Vol. 0, No. 0. (0), pp. 1-4.
    by Graeme B Jacobs, Markus Nistal, Annette Laten, Estrelita J van Rensburg, Axel Rethwilm, Wolfgang Preiser, Jochen Bodem, Susan Engelbrecht
    posted to vif by kieran101 on 2008-07-04 14:12:42 as **
  • Analysis of Natural Sequence Variation and Covariation in Human Immunodeficiency Virus Type-1 Integrase
    J. Virol. (2 July 2008), JVI.01535-07.
    by Richard E Myers, Deenan Pillay
    posted to integrase modelling by kieran101 on 2008-07-04 14:02:14 as **
  • Covariation of amino acid positions in HIV-1 protease.
    Virology, Vol. 314, No. 2. (30 September 2003), pp. 536-548.
    by NG Hoffman, CA Schiffer, R Swanstrom
    posted to modelling protease by kieran101 on 2008-07-02 14:27:45 as **
  • Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase.
    PLoS ONE, Vol. 2, No. 8. (2007)
    by Q Wang, C Lee
    posted to modelling by kieran101 on 2008-07-02 14:24:05 as **
  • A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.
    Proc Natl Acad Sci U S A, Vol. 103, No. 16. (18 April 2006), pp. 6263-6268.
    by JP Huelsenbeck, S Jain, SW Frost, SL Pond
    posted to modelling by kieran101 on 2008-06-27 11:37:45 as ** along with 2 people ejeffery dmc
  • HIV-1 Vif, APOBEC, and intrinsic immunity
    Retrovirology, Vol. 5 (24 June 2008), 51.
    by Ritu Goila-Gaur, Klaus Strebel
    posted to apobec review vif by kieran101 on 2008-06-27 10:09:41 as **
  • Retroviral restriction by APOBEC proteins.
    Nat Rev Immunol, Vol. 4, No. 11. (November 2004), pp. 868-877.
    by RS Harris, MT Liddament
    posted to apobec review by kieran101 on 2008-06-25 16:44:26 as ** along with 1 person madhadron
  • Coronavirus Replication Complex Formation Utilizes Components of Cellular Autophagy
    J. Biol. Chem., Vol. 279, No. 11. (12 March 2004), pp. 10136-10141.
    by Erik Prentice, Gray W Jerome, Tamotsu Yoshimori, Noboru Mizushima, Mark R Denison
    posted to autophagy by kieran101 on 2008-06-24 17:30:27 as **
  • Subversion of Cellular Autophagosomal Machinery by RNA Viruses
    PLoS Biology, Vol. 3, No. 5. (1 May 2005), e156.
    by William T Jackson, Thomas H Giddings, Matthew P Taylor, Sara Mulinyawe, Marlene Rabinovitch, Ron R Kopito, Karla Kirkegaard
    posted to autophagy by kieran101 on 2008-06-24 17:30:15 as **
  • Apoptosis and autophagy: regulatory connections between two supposedly different processes.
    Apoptosis : an international journal on programmed cell death, Vol. 13, No. 1. (January 2008), pp. 1-9.
    by A Thorburn
    posted to apoptosis autophagy review by kieran101 on 2008-06-24 14:39:30 as **
  • To die or not to die: that is the autophagic question.
    Current molecular medicine, Vol. 8, No. 2. (March 2008), pp. 78-91.
    by L Galluzzi, JM Vicencio, O Kepp, E Tasdemir, MC Maiuri, G Kroemer
    posted to autophagy review by kieran101 on 2008-06-24 14:27:31 as **
  • The molecular machinery of autophagy: unanswered questions
    J Cell Sci, Vol. 118, No. 1. (1 January 2005), pp. 7-18.
    by Daniel J Klionsky
    posted to autophagy by kieran101 on 2008-06-24 12:00:41 as **
  • Molecular machinery of autophagosome formation in yeast, Saccharomyces cerevisiae.
    FEBS letters, Vol. 581, No. 11. (22 May 2007), pp. 2156-2161.
    by K Suzuki, Y Ohsumi
    posted to autophagy by kieran101 on 2008-06-24 12:00:24 as **
  • Evidence for a newly discovered cellular anti-HIV-1 phenotype.
    Nature medicine, Vol. 4, No. 12. (December 1998), pp. 1397-1400.
    by JH Simon, NC Gaddis, RA Fouchier, MH Malim
    posted to apobec by kieran101 on 2008-06-24 11:46:13 as **
  • DNA deamination mediates innate immunity to retroviral infection.
    Cell, Vol. 113, No. 6. (13 June 2003), pp. 803-809.
    by RS Harris, KN Bishop, AM Sheehy, HM Craig, SK Petersen-Mahrt, IN Watt, MS Neuberger, MH Malim
    posted to apobec by kieran101 on 2008-06-24 11:45:57 as ** along with 1 person ffranca
  • Dynamic binding orientations direct activity of HIV reverse transcriptase
    Nature, Vol. 453, No. 7192. (May 2008), pp. 184-189.
    by Elio A Abbondanzieri, Gregory Bokinsky, Jason W Rausch, Jennifer X Zhang, Stuart F Le Grice, Xiaowei Zhuang
    posted to rt by kieran101 on 2008-06-23 16:23:20 as ** along with 2 people and 1 group wsjames cactus Oxford Virology
  • Human immunodeficiency virus type-1 infection inhibits autophagy.
    AIDS (London, England), Vol. 22, No. 6. (30 March 2008), pp. 695-699.
    by D Zhou, SA Spector
    posted to autophagy by kieran101 on 2008-06-20 16:58:34 as **
  • A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells.
    Proc Natl Acad Sci U S A, Vol. 102, No. 37. (13 September 2005), pp. 13212-13217.
    by F Stegmeier, G Hu, RJ Rickles, GJ Hannon, SJ Elledge
    posted to techniques by kieran101 on 2008-06-11 10:12:10 as ** along with 3 people jyuh mgantier tibbitts
  • Second-generation shRNA libraries covering the mouse and human genomes
    Nature Genetics, Vol. 37, No. 11. (02 October 2005), pp. 1281-1288.
    by Jose M Silva, Mamie Z Li, Ken Chang, Wei Ge, Michael C Golding, Richard J Rickles, Despina Siolas, Guang Hu, Patrick J Paddison, Michael R Schlabach, Nihar Sheth, Jeff Bradshaw, Julia Burchard, Amit Kulkarni, Guy Cavet, Ravi Sachidanandam, Richard W Mccombie, Michele A Cleary, Stephen J Elledge, Gregory J Hannon
    posted to techniques by kieran101 on 2008-06-11 10:10:49 as ** along with 3 people shimi002 textoris timyu
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