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kieran101 modelling [14 articles]

Recent papers added to kieran101 library classified by the tag modelling. You can also see everyone's modelling.
  • From the editors
    Nat Rev Genet, Vol. 7, No. 10. (October 2006), pp. 737-737.
    posted to modelling techniques by kieran101 on 2008-07-08 13:53:52 as ** along with 1 person psique
  • A tutorial on statistical methods for population association studies
    Nature Reviews Genetics, Vol. 7, No. 10., pp. 781-791.
    by David J Balding
    posted to modelling techniques by kieran101 on 2008-07-08 13:47:20 as ** along with 8 people and 1 group psique jbsaltz jyuh jermth giovanni joepickrell dbgrant jo_davies GeschwindLab
  • HIV-1 subtype B protease and reverse transcriptase amino acid covariation.
    PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007)
    by SY Rhee, TF Liu, SP Holmes, RW Shafer
    posted to modelling protease rt techniques by kieran101 on 2008-07-08 11:47:17 as ** along with 1 person cjeans
  • Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?
    Protein Eng, Vol. 7, No. 3. (March 1994), pp. 349-358.
    by IN Shindyalov, NA Kolchanov, C Sander
    posted to modelling structure by kieran101 on 2008-07-08 09:24:27 as ** along with 2 people gbart nirfriedman
  • Analysis of Natural Sequence Variation and Covariation in Human Immunodeficiency Virus Type-1 Integrase
    J. Virol. (2 July 2008), JVI.01535-07.
    by Richard E Myers, Deenan Pillay
    posted to integrase modelling by kieran101 on 2008-07-04 14:02:14 as **
  • Covariation of amino acid positions in HIV-1 protease.
    Virology, Vol. 314, No. 2. (30 September 2003), pp. 536-548.
    by NG Hoffman, CA Schiffer, R Swanstrom
    posted to modelling protease by kieran101 on 2008-07-02 14:27:45 as **
  • Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase.
    PLoS ONE, Vol. 2, No. 8. (2007)
    by Q Wang, C Lee
    posted to modelling by kieran101 on 2008-07-02 14:24:05 as **
  • A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.
    Proc Natl Acad Sci U S A, Vol. 103, No. 16. (18 April 2006), pp. 6263-6268.
    by JP Huelsenbeck, S Jain, SW Frost, SL Pond
    posted to modelling by kieran101 on 2008-06-27 11:37:45 as ** along with 2 people ejeffery dmc
  • Compensatory evolution in RNA secondary structures increases substitution rate variation among sites
    Mol Biol Evol (4 June 2008), msn130.
    by Jennifer L Knies, Kristen K Dang, Todd J Vision, Noah G Hoffman, Ronald Swanstrom, Christina L Burch
    posted to modelling rna by kieran101 on 2008-06-09 10:34:59 as ** along with 2 people marck friendpine
  • Vibrational Markovian modelling of footprints after the interaction of antibiotics with the packaging region of HIV type 1.
    Bulletin of mathematical biology, Vol. 65, No. 6. (November 2003), pp. 991-1002.
    by HG Díaz, RR de Armas, R Molina
    posted to modelling by kieran101 on 2008-05-29 16:29:23 as **
  • Selection against CpG dinucleotides in lentiviral genes: a possible role of methylation in regulation of viral expression
    Nucl. Acids Res., Vol. 18, No. 19. (11 October 1990), pp. 5793-5797.
    by Eugene G Shpaer, James I Mullins
    posted to modelling by kieran101 on 2008-05-06 16:56:35 as **
  • Estimating the relative contribution of dNTP pool imbalance and APOBEC3G/3F editing to HIV evolution in vivo.
    J Comput Biol, Vol. 14, No. 8. (October 2007), pp. 1105-1114.
    by K Deforche, R Camacho, KV Laethem, B Shapiro, Y Moreau, A Rambaut, AM Vandamme, P Lemey
    posted to apobec modelling by kieran101 on 2008-05-06 13:33:10 as ** along with 1 person RedmondSmyth
  • HIV-1 sequence variation: drift, shift, and attenuation.
    Cell, Vol. 104, No. 4. (23 February 2001), pp. 469-472.
    by MH Malim, M Emerman
    posted to modelling phylogenetics review by kieran101 on 2008-04-29 19:21:12 as read along with 1 group Malim Lab
  • Decay dynamics of HIV-1 depend on the inhibited stages of the viral life cycle
    Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4832-4837.
    by Ahmad R Sedaghat, Jason B Dinoso, Lin Shen, Claus O Wilke, Robert F Siliciano
    posted to modelling by kieran101 on 2008-04-28 10:34:28 as **
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