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lfriedl Gerstein [19 articles]

Recent papers posted to lfriedl library by the author Gerstein. You can also see Gerstein everyone.
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to ppi by lfriedl on 2007-08-06 17:54:58 as ** along with 17 people and 2 groups carlk saket paolomarcatili bicko chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl structural_bioinformatics kdl
  • notes Bridging structural biology and genomics: assessing protein interaction data with known complexes
    Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536.
    by Aled M Edwards, Bart Kus, Ronald Jansen, Dov Greenbaum, Jack Greenblatt, Mark Gerstein
    posted to bio ppi usesmipsset by lfriedl on 2006-07-05 20:47:31 as ** along with 4 people and 1 group wnpx reidy ruvido wilbur kdl
  • Integrated Prediction of the Helical Membrane Protein Interactome in Yeast
    Journal of Molecular Biology, Vol. 357, No. 1. (17 March 2006), pp. 339-349.
    by Yu Xia, Long J Lu, Mark Gerstein
    posted to bio ppi usesmipsset by lfriedl on 2006-06-29 21:36:54 as ** along with 1 group kdl
  • GENOMICS: Defining Genes in the Genomics Era
    Science, Vol. 300, No. 5617. (11 April 2003), pp. 258-260.
    by Michael Snyder, Mark Gerstein
    posted to bio review by lfriedl on 2006-06-29 20:30:07 as read along with 1 group kdl
  • notes Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature (22 March 2006)
    by Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis, Thanuja Punna, Josã© M Peregrã­n-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D Robinson, Alberto Paccanaro, James E Bray, Anthony Sheung, Bryan Beattie, Dawn P Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R Collins, Shamanta Chandran, Robin Haw, Jennifer J Rilstone, Kiran Gandi, Natalie J Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy HY Lam, Gareth Butland, Amin M Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S Weissman, James C Ingles, Timothy R Hughes, John Parkinson, Mark Gerstein, Shoshana J Wodak, Andrew Emili, Jack F Greenblatt
    posted to bio high_throughput_dataset ppi by lfriedl on 2006-04-25 21:37:03 as **** along with 21 people and 4 groups ethkim mapplab chasmand hplatero frohike carlk Borelli chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu kdl EBI-regulation BioinfoCIPF SGU-CIPF
  • TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics.
    Nucleic Acids Res, Vol. 32, No. 1. (2004), pp. 328-337.
    by H Yu, X Zhu, D Greenbaum, J Karro, M Gerstein
    posted to bio graph_based_analysis by lfriedl on 2006-04-25 16:12:38 as ***** along with 1 person and 1 group IbnBio kdl
  • Genomic analysis of regulatory network dynamics reveals large topological changes.
    Nature, Vol. 431, No. 7006. (16 September 2004), pp. 308-312.
    by NM Luscombe, MM Babu, H Yu, M Snyder, SA Teichmann, M Gerstein
    posted to bio graph_based_analysis reconstruct_pathway by lfriedl on 2006-04-25 16:11:29 as **** along with 20 people and 6 groups carlk faion camster snuppepuppan hununu icases lna alexg nirfriedman dgront nickluscombe kairita comb kengg gespim koller timflutre fishtank cjeans rebeccamancy dbk-lab kdl EBI-regulation TNT ColDyn Plantandetc
  • Genome-wide analysis relating expression level with protein subcellular localization
    Trends in Genetics, Vol. 16, No. 10. (1 October 2000), pp. 426-430.
    by Amar Drawid, Ronald Jansen, Mark Gerstein
    posted to bio by lfriedl on 2006-02-28 22:14:39 as ** along with 1 group kdl
  • Subcellular localization of the yeast proteome
    Genes Dev., Vol. 16, No. 6. (15 March 2002), pp. 707-719.
    by Anuj Kumar, Seema Agarwal, John A Heyman, Sandra Matson, Matthew Heidtman, Stacy Piccirillo, Lara Umansky, Amar Drawid, Ronald Jansen, Yang Liu, Kei-Hoi Cheung, Perry Miller, Mark Gerstein, Shirleen G Roeder, Michael Snyder
    posted to bio high_throughput_dataset by lfriedl on 2006-02-28 20:00:23 as ** along with 3 people and 2 groups gurkanbebek raiyar dbenn kdl steinmetzlab
  • PROTEOMICS: Enhanced: Integrating Interactomes
    Science, Vol. 295, No. 5553. (11 January 2002), pp. 284-287.
    by Mark Gerstein, Ning Lan, Ronald Jansen
    posted to bio review by lfriedl on 2006-02-28 19:59:33 as ** along with 2 people and 1 group balajis grahamc kdl
  • notes Functional profiling of the Saccharomyces cerevisiae genome.
    Nature, Vol. 418, No. 6896. (25 July 2002), pp. 387-391.
    by G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Véronneau, S Dow, A Lucau-Danila, K Anderson, B André, AP Arkin, A Astromoff, M El-Bakkoury, R Bangham, R Benito, S Brachat, S Campanaro, M Curtiss, K Davis, A Deutschbauer, KD Entian, P Flaherty, F Foury, DJ Garfinkel, M Gerstein, D Gotte, U Güldener, JH Hegemann, S Hempel, Z Herman, DF Jaramillo, DE Kelly, SL Kelly, P Kötter, D LaBonte, DC Lamb, N Lan, H Liang, H Liao, L Liu, C Luo, M Lussier, R Mao, P Menard, SL Ooi, JL Revuelta, CJ Roberts, M Rose, P Ross-Macdonald, B Scherens, G Schimmack, B Shafer, DD Shoemaker, S Sookhai-Mahadeo, RK Storms, JN Strathern, G Valle, M Voet, G Volckaert, CY Wang, TR Ward, J Wilhelmy, EA Winzeler, Y Yang, G Yen, E Youngman, K Yu, H Bussey, JD Boeke, M Snyder, P Philippsen, RW Davis, M Johnston
    posted to bio high_throughput_dataset by lfriedl on 2006-02-27 17:08:57 as ** along with 11 people and 2 groups dylanwalker chasmand pcahan1 balajis rebeccahainess nirfriedman koller raiyar cjeans jiny hplatero kdl steinmetzlab
  • notes Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons.
    Genome Res, Vol. 12, No. 11. (November 2002), pp. 1703-1715.
    by A Mateos, J Dopazo, R Jansen, Y Tu, M Gerstein, G Stolovitzky
    posted to bio predict_function by lfriedl on 2005-09-29 20:23:42 as ** along with 1 person and 1 group tmmurali kdl
  • notes Information assessment on predicting protein-protein interactions.
    BMC Bioinformatics, Vol. 5 (18 October 2004)
    by N Lin, B Wu, R Jansen, M Gerstein, H Zhao
    posted to bio predict_function by lfriedl on 2005-09-29 14:52:24 as read along with 5 people and 2 groups okarsligil wnpx eukfn cjeans iris_2001 kdl Bioinformatics
  • notes Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to bio multiple_data_sources predict_function by lfriedl on 2005-09-29 14:49:08 as read along with 13 people and 2 groups phoenixzxl carlk brianb iris_2001 okarsligil balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards kdl Bioinformatics
  • notes Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction.
    Curr Opin Microbiol, Vol. 7, No. 5. (October 2004), pp. 535-545.
    by R Jansen, M Gerstein
    posted to bio predict_function by lfriedl on 2005-09-29 14:30:14 as ***** along with 5 people and 2 groups carlk okarsligil wnpx neils grahamc kdl Bioinformatics
  • notes A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome
    Journal of Molecular Biology, Vol. 301, No. 4. (25 August 2000), pp. 1059-1075.
    by Amar Drawid, Mark Gerstein
    posted to bio multiple_data_sources by lfriedl on 2005-09-29 03:58:00 as ** along with 1 group kdl
  • A map of the interactome network of the metazoan C. elegans.
    Science, Vol. 303, No. 5657. (23 January 2004), pp. 540-543.
    by S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, JD Han, A Chesneau, T Hao, DS Goldberg, N Li, M Martinez, JF Rual, P Lamesch, L Xu, M Tewari, SL Wong, LV Zhang, GF Berriz, L Jacotot, P Vaglio, J Reboul, T Hirozane-Kishikawa, Q Li, HW Gabel, A Elewa, B Baumgartner, DJ Rose, H Yu, S Bosak, R Sequerra, A Fraser, SE Mango, WM Saxton, S Strome, S Van Den Heuvel, F Piano, J Vandenhaute, C Sardet, M Gerstein, L Doucette-Stamm, KC Gunsalus, JW Harper, ME Cusick, FP Roth, DE Hill, M Vidal
    posted to bio ppi by lfriedl on 2005-08-30 19:00:02 as ** along with 7 people and 1 group ksiek carlk shivaram nuke2005 lyongu sesejun Chue kdl
  • notes Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
    Journal of Molecular Biology, Vol. 297, No. 1. (17 March 2000), pp. 233-249.
    by Cyrus A Wilson, Julia Kreychman, Mark Gerstein
    posted to bio predict_function by lfriedl on 2005-08-29 21:35:21 as ** along with 1 group kdl
  • notes A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to bio multiple_data_sources by lfriedl on 2005-08-29 18:54:25 as read along with 18 people and 2 groups frohike carlk balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 kdl EBI-regulation
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