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mailund library [72 articles]

Статьи, недавно добавленные в библиотеку mailund .
  • Human-macaque comparisons illuminate variation in neutral substitution rates
    Genome Biology, Vol. 9 (30 April 2008), R76.
    by Svitlana Tyekucheva, Kateryna D Makova, John E Karro, Ross C Hardison, Webb Miller, Francesca Chiaromonte
    posted to comparative-genomics by mailund on 2008-05-23 12:38:58 as read
  • Analysing georeferenced population genetics data with Geneland: a new algorithm to deal with null alleles and a friendly graphical user interface
    Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1406-1407.
    by Gilles Guillot, Filipe Santos, Arnaud Estoup
    posted to r mcmc by mailund on 2008-05-22 08:50:31 as read along with 2 people DWisker jyuh
  • MAMOT: Hidden MArkov MOdeling Tool.
    Bioinformatics (Oxford, England) (25 April 2008)
    by Frédéric Schütz, Mauro Delorenzi
    posted to hmm by mailund on 2008-05-21 17:49:38 as read along with 2 people jyuh cabbagesofdoom
  • The Impact of Recombination on Nucleotide Substitutions in the Human Genome
    PLoS Genetics
    by Laurent Duret, Peter Arndt
    posted to genetics comparative-genomics by mailund on 2008-05-20 16:36:45 as read along with 2 people jasontsai djkt
  • Bayesian Graphical Models for Genomewide Association Studies
    The American Journal of Human Genetics, Vol. 79, No. 1. (July 2006), pp. 100-112.
    by Claudio J Verzilli, Nigel Stallard, John C Whittaker
    posted to association-mapping by mailund on 2008-05-15 15:17:08 as read
  • Imputation-Based Analysis of Association Studies: Candidate Regions and Quantitative Traits
    PLoS Genetics, Vol. 3, No. 7. (2007)
    by Bertrand Servin, Matthew Stephens
    posted to imputation genetics association-mapping by mailund on 2008-05-08 19:05:02 as read
  • Fast and Accurate Estimation of the Population-Scaled Mutation Rate, theta, From Microsatellite Genotype Data
    Genetics, Vol. 176, No. 2. (1 June 2007), pp. 1363-1366.
    by Arindam Roychoudhury, Matthew Stephens
    posted to genetics by mailund on 2008-05-08 13:43:56 as read
  • ConnectComplete A Markov Chain Monte Carlo Expectation Maximization Algorithm for Statistical Analysis of DNA Sequence Evolution with Neighbor-Dependent Substitution rates
    Journal of Computational and Graphical Statistics, Vol. 17, No. 1. (2008), pp. 1-25.
    by Asger Hobolth
    posted to sequence-analysis interaction comparative-genomics by mailund on 2008-05-02 17:37:24 as read
  • Exploiting Hardy-Weinberg Equilibrium for Efficient Screening of Single SNP Associations from Case-Control Studies
    Human Heredity, Vol. 63 (2007), pp. 196-204.
    by Jinbo Chen, Nilanja Chatterjee
    posted to population-genetics genetics association-mapping by mailund on 2008-04-24 11:02:51 as read
  • Bayesian models based on test statistics for multiple hypothesis testing problems.
    Bioinformatics (1 February 2008)
    by Yuan Ji, Yiling Lu, Gordon B B Mills
    posted to no-tag by mailund on 2008-04-22 08:30:37 as read along with 8 people craigwilson06 jyuh jfr djkt shigepong GeeSharpMinor bertelsen maralena
  • Disease association tests by inferring ancestral haplotypes using a hidden markov model
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 972-978.
    by Shu-Yi Su, David J Balding, Lachlan J Coin
    posted to association-mapping hmm by mailund on 2008-04-22 08:29:50 as read
  • The effect of sequence quality on sequence alignment
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 897-900.
    by Ketil Malde
    posted to alignment by mailund on 2008-04-22 08:28:25 as read along with 1 person niallhaslam
  • Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 298-309.
    by Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein
    posted to alignment statistical-alignment by mailund on 2008-04-08 10:26:40 as read along with 8 people AaronDarling gjuggler aprasad brant treangen djkt grahamc dandaman
  • Exploration of gene–gene interaction effects using entropy-based methods
    European Journal of Human Genetics, Vol. aop, No. current.
    by Changzheng Dong, Xun Chu, Ying Wang, Yi Wang, Li Jin, Tieliu Shi, Wei Huang, Yixue Li
    posted to association-mapping data-mining interaction by mailund on 2008-04-08 09:45:41 as read
  • What Can Genome-Wide Association Studies Tell Us about the Genetics of Common Disease
    PLoS Genetics, Vol. 4, No. 2.
    by Mark M Iles
    posted to association-mapping by mailund on 2008-04-08 09:44:20 as read
  • Bayesian inference of epistatic interactions in case-control studies
    Nature Genetics, Vol. 39, No. 9. (26 August 2007), pp. 1167-1173.
    by Yu Zhang, Jun S Liu
    posted to association-mapping interaction mcmc by mailund on 2008-04-08 09:43:17 as read along with 2 people jyuh zwang
  • Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments
    Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383.
    by Giddy Landan, Dan Graur
    posted to alignment by mailund on 2008-03-23 13:40:27 as read along with 7 people and 1 group aprasad rvosa BioNica stajich cjeans zwang lilou FAB-lab
  • Power of genome-wide association studies in the presence of interacting loci.
    Genet Epidemiol (16 May 2007)
    by Joseph Pickrell, Françoise Clerget-Darpoux, Catherine Bourgain
    posted to association-mapping interaction by mailund on 2008-03-23 12:55:19 as read along with 2 people and 1 group jyuh joepickrell Bioinformatics
  • Estimating Local Ancestry in Admixed Populations
    American Journal of Human Genetics, Vol. 82, No. 2. (2008), pp. 290-303.
    by Sriram Sankararaman, Srinath Sridhar, Gad Kimmel, Eran Halperin
    posted to population-genetics by mailund on 2008-02-26 13:02:19 as read
  • Multifactor-Dimensionality Reduction Reveals High-Order Interactions among Estrogen-Metabolism Genes in Sporadic Breast Cancer
    American journal of human genetics, Vol. 69, No. 1. (2001), pp. 138-147.
    by Marylyn D Ritchie, Lance W Hahn, Nady Roodi, Renee L Bailey, William D Dupont, Fritz F Parl, Jason H Moore
    posted to association-mapping by mailund on 2008-02-25 19:54:04 as read
  • PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
    American Journal of Human Genetics, Vol. 81, No. 3. (2007), pp. 559-575.
    by Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel AR Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul IW de Bakker, Mark J Daly, Pak C Sham
    posted to association-mapping population-genetics by mailund on 2008-02-25 15:24:50 as read
  • Efficiency and power in genetic association studies
    Nature Genetics, Vol. 37, No. 11. (23 October 2005), pp. 1217-1223.
    by Paul IW de Bakker, Roman Yelensky, Itsik Pe'er, Stacey B Gabriel, Mark J Daly, David Altshuler
    posted to association-mapping population-genetics by mailund on 2008-02-25 11:36:39 as read along with 8 people and 2 groups Ayest jyuh pcahan1 tiago ashandanj giovanni debasis parkcc Bioinformatics GeschwindLab
  • Haploview: analysis and visualization of LD and haplotype maps
    Bioinformatics, Vol. 21, No. 2., 263.
    by JC Barrett, B Fry, J Maller, MJ Daly
    posted to association-mapping population-genetics software by mailund on 2008-02-25 11:29:49 as read along with 1 person Ayest
  • Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1100-1104.
    by Jun Z Li, Devin M Absher, Hua Tang, Audrey M Southwick, Amanda M Casto, Sohini Ramachandran, Howard M Cann, Gregory S Barsh, Marcus Feldman, Luigi L Cavalli-Sforza, Richard M Myers
    posted to population-genetics by mailund on 2008-02-24 12:58:08 as read along with 10 people Archaeogenetics adacier cgravlee echinotrix EsepBib ramensky zwang qwermish xingxu Dorkins
  • Genotype, haplotype and copy-number variation in worldwide human populations
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 998-1003.
    by Mattias Jakobsson, Sonja W Scholz, Paul Scheet, Raphael J Gibbs, Jenna M Vanliere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro, Jose M Bras, Jennifer C Schymick, Dena G Hernandez, Bryan J Traynor, Javier Simon-Sanchez, Mar Matarin, Angela Britton, Joyce van de Leemput, Ian Rafferty, Maja Bucan, Howard M Cann, John A Hardy, Noah A Rosenberg, Andrew B Singleton
    posted to population-genetics by mailund on 2008-02-23 12:53:34 as read along with 5 people and 1 group jyuh Archaeogenetics djkt ramensky thomaskelder Fasting, food and evolution
  • Proportionally more deleterious genetic variation in European than in African populations
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 994-997.
    by Kirk E Lohmueller, Amit R Indap, Steffen Schmidt, Adam R Boyko, Ryan D Hernandez, Melissa J Hubisz, John J Sninsky, Thomas J White, Shamil R Sunyaev, Rasmus Nielsen, Andrew G Clark, Carlos D Bustamante
    posted to no-tag by mailund on 2008-02-23 11:28:42 as read along with 3 people and 1 group ramensky djkt caseybrown Fasting, food and evolution
  • A new approach to estimate parameters of speciation models with application to apes
    Genome Res. (21 August 2007), gr.6409707.
    by Celine Becquet, Molly Przeworski
    posted to no-tag by mailund on 2008-02-18 20:47:45 as read along with 2 people and 1 group ryanraaum dmc Durbin group
  • Genomic Variability within an Organism Exposes Its Cell Lineage Tree.
    PLoS Comput Biol, Vol. 1, No. 5. (October 2005)
    by D Frumkin, A Wasserstrom, S Kaplan, U Feige, E Shapiro
    posted to somatic-evolution by mailund on 2008-02-16 07:44:22 as read along with 2 people setar jmeppley
  • Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e173.
    by Daniel A Pollard, Venky N Iyer, Alan M Moses, Michael B Eisen
    posted to coalescence-theory coalhmm by mailund on 2008-02-16 07:37:51 as read along with 1 person aprasad
  • Application of Ancestry Informative Markers to Association Studies in European Americans
    PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e5.
    by Michael F Seldin, Alkes L Price
    posted to association-mapping by mailund on 2008-02-14 18:07:38 as read
  • AJHG - Pathway-Based Approaches for Analysis of Genomewide Association Studies
    American journal of human genetics, Vol. 81, No. 6. (December 2007), pp. 1278-1283.
    by Kai Wang, Mingyao Li, Maja Bucan
    posted to no-tag by mailund on 2008-02-14 18:00:24 as read
  • AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 581-583.
    by Johan A Nylander, James C Wilgenbusch, Dan L Warren, David L Swofford
    posted to mcmc by mailund on 2008-02-14 17:43:38 as read along with 1 person and 1 group stajich Berkeley Mycology
  • The SBML Discrete Stochastic Models Test Suite
    Bioinformatics (19 November 2007), btm566.
    by Thomas W Evans, Colin S Gillespie, Darren J Wilkinson
    posted to systems-biology by mailund on 2008-02-14 13:05:11 as read along with 2 people Ema csgillespie
  • Association studies for untyped markers with TUNA
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 435-437.
    by Xiaoquan Wen, Dan L Nicolae
    posted to association-mapping by mailund on 2008-02-01 06:33:52 as read along with 1 person jyuh
  • Mapping Human Genetic Ancestry
    Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2266-2276.
    by Ingo Ebersberger, Petra Galgoczy, Stefan Taudien, Simone Taenzer, Matthias Platzer, Arndt von Haeseler
    posted to comparative-genomics genetics phylogenetics by mailund on 2008-01-29 20:06:08 as read along with 2 people dchughes ryanraaum
  • Petri Net representations in systems biology.
    Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1513-1515.
    by JW Pinney, DR Westhead, GA McConkey
    posted to petri-nets systems-biology by mailund on 2008-01-28 19:09:41 as read along with 2 people and 1 group camster wnpx dbk-lab
  • Petri net-based method for the analysis of the dynamics of signal propagation in signaling pathways
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 209-217.
    by Simon Hardy, Pierre N Robillard
    posted to petri-nets systems-biology by mailund on 2008-01-28 19:06:24 as read along with 2 people bootsy biehl
  • RReportGenerator : Automatic reports from routine statistical analysis using R
    Bioinformatics (24 November 2007), btm556.
    by Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, David Kieffer, Anne-Laure Morand, Laurent Brino, Olivier Poch
    posted to r by mailund on 2008-01-22 18:52:22 as read along with 4 people jyuh jfr waszak maralena
  • Deja vu A Study of Duplicate Citations in Medline
    Bioinformatics (1 December 2007), btm574.
    by Mounir Errami, Justin M Hicks, Wayne Fisher, David Trusty, Jonathan D Wren, Tara C Long, Harold R Garner
    posted to no-tag by mailund on 2008-01-20 12:17:36 as read along with 5 people jyuh lfriedl dullhunk Gaetan renatomilani
  • On Recombination-Induced Multiple and Simultaneous Coalescent Events
    Genetics, Vol. 177, No. 4. (1 December 2007), pp. 2151-2160.
    by Joanna L Davies, Frantisek Simancik, Rune Lyngso, Thomas Mailund, Jotun Hein
    posted to genetics by mailund on 2008-01-11 15:08:17 as read along with 1 person jo_davies
  • GWAsimulator: a rapid whole-genome simulation program
    Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 140-142.
    by Chun Li, Mingyao Li
    posted to association-mapping software by mailund on 2008-01-11 09:42:56 as read along with 2 people jyuh ryanraaum
  • Pathway Approaches for Genomewide Studies
    American Journal of Human Genetics, Vol. 81, pp. 1278-1283.
    by Kai Wang, Mingyao Li, Maja Bucan
    posted to association-mapping by mailund on 2008-01-10 12:30:39 as read
  • SeqAn - An efficient, generic C++ library for sequence analysis
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andreas Doring, David Weese, Tobias Rausch, Knut Reinert
    posted to comparative-genomics sequence-analysis software by mailund on 2008-01-10 10:34:18 as read along with 8 people reyez magusina jyuh chad_davis laughcry ryanraaum nklee barriot
  • Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model.
    PLoS Comput Biol, Vol. 2, No. 1. (13 January 2006)
    by Gerton Lunter, Chris P P Ponting, Jotun Hein
    posted to comparative-genomics by mailund on 2008-01-09 13:42:57 as read along with 8 people and 2 groups aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas Stew cisevol EisenLab cis-regulatory-evolution
  • Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by G Lunter
    posted to comparative-genomics statistical-alignment by mailund on 2008-01-09 13:42:39 as read along with 3 people and 1 group aprasad AaronDarling elfar Bioinformatics
  • A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
    American Journal of Human Genetics, Vol. 78, No. 4. (2006), pp. 629-644.
    by Paul Scheet, Matthew Stephens
    posted to phasing by mailund on 2007-12-08 09:14:54 as read along with 1 person hms
  • A new multipoint method for genome-wide association studies by imputation of genotypes.
    Nat Genet (17 June 2007)
    by Jonathan Marchini, Bryan Howie, Simon Myers, Gil McVean, Peter Donnelly
    posted to association-mapping imputation by mailund on 2007-12-08 09:11:47 as read along with 5 people jyuh balicea vplagnol hms dmc
  • Genome-wide strategies for detecting multiple loci that influence complex diseases
    Nature Genetics, Vol. 37, No. 4. (27 March 2005), pp. 413-417.
    by Jonathan Marchini, Peter Donnelly, Lon R Cardon
    posted to association-mapping interaction by mailund on 2007-12-08 09:08:22 as read along with 2 people lp2 dmc
  • Linkage disequilibrium mapping identifies a 390 kb region associated with CYP2D6 poor drug metabolising activity.
    Pharmacogenomics J, Vol. 2, No. 3. (2002), pp. 165-175.
    by LK Hosking, PR Boyd, CF Xu, M Nissum, K Cantone, IJ Purvis, R Khakhar, MR Barnes, U Liberwirth, K Hagen-Mann, MG Ehm, JH Riley
    posted to association-mapping case-study by mailund on 2007-12-08 09:08:02 as read
  • Fine mapping of disease genes via haplotype clustering.
    Genet Epidemiol, Vol. 30, No. 2. (February 2006), pp. 170-179.
    by ER Waldron, JC Whittaker, DJ Balding
    posted to association-mapping mcmc by mailund on 2007-12-08 09:07:46 as read
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