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marcius ab-initio [12 articles]

Recent papers added to marcius library classified by the tag ab-initio. You can also see everyone's ab-initio.
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to ab-initio rna structure_prediction by marcius on 2007-09-01 10:46:02 as ** along with 6 people and 2 groups reyez jwm eckart_bindewald zwang physics Ema BioinfoCIPF SGU-CIPF
  • KemaDom: a web server for domain prediction using kernel machine with local context.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by L Chen, W Wang, S Ling, C Jia, F Wang
    posted to ab-initio bioinformatics prediction protein_domains by marcius on 2006-09-11 09:35:21 as ** along with 1 person and 2 groups skhadar BioinfoCIPF SGU-CIPF
  • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
    Nucleic Acids Res, Vol. 9, No. 1. (10 January 1981), pp. 133-148.
    by M Zuker, P Stiegler
    posted to ab-initio biophysics folding rna by marcius on 2006-03-18 20:59:28 as ** along with 5 people and 2 groups evaf arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
  • High-resolution protein folding with a transferable potential
    PNAS, Vol. 102, No. 52. (27 December 2005), pp. 18914-18919.
    by Isaac A Hubner, Eric J Deeds, Eugene I Shakhnovich
    posted to ab-initio biophysics protein_structure structure_prediction by marcius on 2006-02-07 02:17:31 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Residue-rotamer-reduction algorithm for the protein side-chain conformation problem
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 188-194.
    by Wei Xie, Nikolaos V Sahinidis
    posted to ab-initio biophysics protein_structure rotamers by marcius on 2006-02-02 05:47:25 as ** along with 3 people and 2 groups carlk bicko bluvsh1 BioinfoCIPF SGU-CIPF
  • Grow to Fit Molecular Dynamics (G2FMD): an ab initio method for protein side-chain assignment and refinement
    Protein Engineering, Design and Selection, Vol. 19, No. 2. (February 2006), pp. 55-65.
    by Wei Zhang, Yong Duan
    posted to ab-initio algorithms biophysics computational_biology protein_structure structure_prediction by marcius on 2006-01-27 01:13:40 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Toward High-Resolution de Novo Structure Prediction for Small Proteins
    Science, Vol. 309, No. 5742. (16 September 2005), pp. 1868-1871.
    by Philip Bradley, Kira M Misura, David Baker
    posted to ab-initio biophysics computational_biology structure_prediction by marcius on 2005-11-02 09:16:25 as read along with 8 people and 4 groups BragilMassoud ana barry thaliana jwm vavi gbart thamelry structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Progress in Modeling of Protein Structures and Interactions
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642.
    by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker
    posted to ab-initio bioinformatics biophysics cafasp comparative_modeling review structure_prediction by marcius on 2005-10-28 00:14:41 as read along with 12 people and 2 groups thaliana jwm vavi bicko KyuhoLee eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF
  • Assessment of CASP6 predictions for new and nearly new fold targets.
    Proteins (26 September 2005)
    by James J J Vincent, Chin-Hsien H Tai, B K K Sathyanarayana, Byungkook Lee
    posted to ab-initio cafasp casp model_evaluation structure_prediction by marcius on 2005-10-22 09:12:32 as ** along with 1 person and 2 groups nigham BioinfoCIPF SGU-CIPF
  • Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.
    Proteins (26 September 2005)
    by Andrzej Koliński, Janusz M M Bujnicki
    posted to ab-initio bioinformatics comparative_modeling model_assessment structure_prediction by marcius on 2005-10-22 09:12:12 as *** along with 2 people and 2 groups nigham dgront BioinfoCIPF SGU-CIPF
  • Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM.
    Proteins (26 September 2005)
    by David E E Kim, Dylan Chivian, Lars Malmström, David Baker
    posted to cafasp casp protein_domains ab-initio by marcius on 2005-10-22 09:07:40 as *** along with 1 person and 2 groups jwm BioinfoCIPF SGU-CIPF
  • Free modeling with Rosetta in CASP6.
    Proteins (26 September 2005)
    by Philip Bradley, Lars Malmström, Bin Qian, Jack Schonbrun, Dylan Chivian, David E E Kim, Jens Meiler, Kira M S M Misura, David Baker
    posted to ab-initio cafasp casp structure_prediction by marcius on 2005-10-22 08:58:20 as *** along with 4 people and 2 groups jwm dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
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