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marcius evolution [86 articles]

Recent papers added to marcius library classified by the tag evolution. You can also see everyone's evolution.
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to evolution rna by marcius on 2007-06-12 12:54:21 as ** along with 5 people and 3 groups eckart_bindewald balicea penka i000 cjeans BioinfoCIPF SGU-CIPF YY1
  • Modeling the Evolution of Protein Domain Architectures Using Maximum Parsimony
    Journal of Molecular Biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315.
    by Jessica H Fong, Lewis Y Geer, Anna R Panchenko, Stephen H Bryant
    posted to protein_domains evolution bioinformatics algorithms by marcius on 2007-01-25 08:31:09 as ** along with 5 people and 3 groups icases tny choonpeng redelings zwang BioinfoCIPF SGU-CIPF TNT
  • Protein–Protein Interactions More Conserved within Species than across Species
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e79.
    by Sven Mika, Burkhard Rost
    posted to algorithms evolution protein_domains protein_interactions by marcius on 2006-10-22 12:13:05 as ** along with 3 people and 2 groups chad_davis skhadar dquest BioinfoCIPF SGU-CIPF
  • RNA world - the dark matter of evolutionary genomics
    Journal of Evolutionary Biology, Vol. 19, No. 6. (2006), pp. 1768-1774.
    by P Michalak
    posted to biology evolution rna views by marcius on 2006-10-20 13:19:24 as ** along with 6 people and 5 groups dayjm dchughes cdawson rabu chenlc03 stajich G4ID BioinfoCIPF SGU-CIPF GIG Genetics-of-Gambling
  • Natural history as a predictor of protein evolvability
    Protein Engineering, Design and Selection, Vol. 19, No. 10. (2006), pp. 439-442.
    by O'Loughlin, L Taryn, Patrick, M Wayne, Matsumura, Ichiro
    posted to biology evolution protein structure by marcius on 2006-09-27 13:52:56 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Protein families and their evolution-a structural perspective.
    Annu Rev Biochem, Vol. 74 (2005), pp. 867-900.
    by CA Orengo, JM Thornton
    posted to evolution protein review structure by marcius on 2006-09-08 12:28:15 as ** along with 13 people and 6 groups sim82 nigham ana barry tjimenez jwm chad_davis Einat Schmidtc sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
  • Exploiting protein structure data to explore the evolution of protein function and biological complexity.
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 425-440.
    by RL Marsden, JA Ranea, A Sillero, O Redfern, C Yeats, M Maibaum, D Lee, S Addou, GA Reeves, TJ Dallman, CA Orengo
    posted to evolution function protein structure by marcius on 2006-09-08 12:26:40 as ** along with 1 person and 2 groups jsnoddy BioinfoCIPF SGU-CIPF
  • Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology.
    Proteins, Vol. 58, No. 4. (1 March 2005), pp. 855-865.
    by JV Ponomarenko, PE Bourne, IN Shindyalov
    posted to bioinformatics evolution protein_function protein_structure by marcius on 2006-09-07 17:24:49 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Exploiting sequence and structure homologs to identify protein-protein binding sites.
    Proteins, Vol. 62, No. 3. (15 March 2006), pp. 630-640.
    by JL Chung, W Wang, PE Bourne
    posted to bioinformatics evolution protein_interactions by marcius on 2006-09-07 17:22:13 as ** along with 2 people and 2 groups bicko ameetsoni BioinfoCIPF SGU-CIPF
  • Equivalent binding sites reveal convergently evolved interaction motifs
    Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 550-555.
    by Andreas Henschel, Wan K Kim, Michael Schroeder
    posted to bioinformatics evolution protein_domains protein_interactions by marcius on 2006-09-07 17:16:11 as ** along with 2 people and 2 groups chad_davis nickolay BioinfoCIPF SGU-CIPF
  • The Rna World (Cold Spring Harbor Monograph Series) (Cold Spring Harbor Monograph Series)
    (14 October 2005)
    by Thomas R Cech, John F Atkins
    posted to evolution review rna by marcius on 2006-08-24 15:31:06 as ** along with 1 person and 2 groups tardigrade BioinfoCIPF SGU-CIPF
  • The gain and loss of genes during 600 million years of vertebrate evolution
    Genome Biology, Vol. 7 (24 May 2006), R43.
    by Tine Blomme, Klaas Vandepoele, Stefanie De Bodt, Cedric Simillion, Steven Maere, Yves Van de Peer
    posted to evolution genome human by marcius on 2006-08-23 13:16:00 as ** along with 6 people and 4 groups operon balicea dchughes jhc jryanstevens FMoncini G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • An RNA gene expressed during cortical development evolved rapidly in humans
    Nature (16 August 2006)
    by Katherine S Pollard, Sofie R Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel, Andrew D Kern, Colette Dehay, Haller Igel, Manuel Ares, Pierre Vanderhaeghen, David Haussler
    posted to evolution function rna by marcius on 2006-08-23 09:49:50 as ** along with 11 people and 3 groups bpcusack brian bpb nickluscombe larios joshuashen ealloza ce2benna lusk nolodie rrhudson EBI-regulation BioinfoCIPF SGU-CIPF
  • Human Evolutionary Genetics: Origins, People and Disease
    (09 December 2003)
    by M Jobling
    posted to evolution human by marcius on 2006-08-11 09:39:21 as ** along with 2 people and 2 groups larios jhc BioinfoCIPF SGU-CIPF
  • Noncoding RNAs and homeodomains get together
    Nature Structural & Molecular Biology, Vol. 13, No. 7., pp. 574-574.
    by Sabbi Lall
    posted to evolution ncrna by marcius on 2006-07-26 15:34:33 as ** along with 1 person and 2 groups tardigrade BioinfoCIPF SGU-CIPF
  • Ecological networks and their fragility
    Nature, Vol. 442, No. 7100., pp. 259-264.
    by Josã© M Montoya, Stuart L Pimm, Ricard V Solã©
    posted to bioinformatics evolution by marcius on 2006-07-24 12:49:27 as ** along with 3 people and 5 groups cmm mattjb stefanoallesina FAB-lab ComplexAdaptiveSystems BioinfoCIPF SGU-CIPF DSTO-CAS
  • Functional classification using phylogenomic inference.
    PLoS Comput Biol, Vol. 2, No. 6. (30 June 2006)
    by D Brown, K Sjölander
    posted to bioinformatics classification evolution phylogeny by marcius on 2006-07-19 10:36:11 as ** along with 1 person and 2 groups jhc BioinfoCIPF SGU-CIPF
  • Prebiotic chemistry and the origin of the RNA world.
    Crit Rev Biochem Mol Biol, Vol. 39, No. 2. (r 2004), pp. 99-123.
    by LE Orgel
    posted to biology evolution rna by marcius on 2006-07-18 12:32:52 as ** along with 1 person and 2 groups dayjm BioinfoCIPF SGU-CIPF
  • RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods
    Genetics, Vol. 157, No. 1. (1 January 2001), pp. 399-411.
    by Nicholas J Savill, David C Hoyle, Paul G Higgs
    posted to alignment bioinformatics evolution phylogeny rna by marcius on 2006-07-18 12:24:57 as ** along with 3 people and 4 groups penka condon i000 beta BioinfoCIPF SGU-CIPF YY1
  • Molecular evolution of a microRNA cluster.
    J Mol Biol, Vol. 339, No. 2. (28 May 2004), pp. 327-335.
    by A Tanzer, PF Stadler
    posted to evolution microrna phylogeny by marcius on 2006-07-18 10:36:12 as ** along with 4 people and 2 groups maralena tardigrade mtagaya mtw BioinfoCIPF SGU-CIPF
  • The Expansion of the Metazoan MicroRNA Repertoire.
    BMC Genomics, Vol. 7, No. 1. (15 February 2006)
    by Jana Hertel, Manuela Lindemeyer, Kristin Missal, Claudia Fried, Andrea Tanzer, Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    posted to bioinformatics evolution microrna phylogeny by marcius on 2006-07-18 10:30:10 as ** along with 10 people and 6 groups imouthesmp balicea andersbj dchughes mtagaya ilh brettc mtw akiezun heliopais microRNA G4ID evo-devo BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
    PLoS Comput Biol, Vol. 2, No. 4. (April 2006)
    by L Arbiza, J Dopazo, H Dopazo
    posted to bioinformatics evolution by marcius on 2006-07-13 14:55:30 as ** along with 5 people and 3 groups rvosa operon jordibc hdopazo Garamonfok FAB-lab BioinfoCIPF SGU-CIPF
  • Conservation and divergence of plant microRNA genes
    The Plant Journal, Vol. 46, No. 2. (April 2006), pp. 243-259.
    by Baohong Zhang, Xiaoping Pan, Charles H Cannon, George P Cobb, Todd A Anderson
    posted to classification evolution microrna plant by marcius on 2006-07-13 14:04:46 as ** along with 3 people and 4 groups mortenlindow andersbj cdawson microRNA BioinfoCIPF SGU-CIPF GIG
  • Family specific rates of protein evolution
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1166-1171.
    by Hannes Luz, Martin Vingron
    posted to alignment bioinformatics evolution by marcius on 2006-05-18 00:18:01 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Directed evolution of nucleic acid enzymes.
    Annu Rev Biochem, Vol. 73 (2004), pp. 791-836.
    by GF Joyce
    posted to bioengineering evolution function review rna by marcius on 2006-05-15 22:38:36 as ** along with 3 people and 3 groups rklancer condon Hosna beta BioinfoCIPF SGU-CIPF
  • Did DNA Come From Viruses?
    Science, Vol. 312, No. 5775. (12 May 2006), pp. 870-872.
    by Carl Zimmer
    posted to evolution views virus by marcius on 2006-05-13 02:52:53 as ** along with 7 people and 8 groups dayjm dchughes kmcolo echinotrix balvarez cursonivel1 candypmcg G4ID cliamte_change instaar_graduate_students climate_change BioinfoCIPF SGU-CIPF Genetics-of-Gambling cursonivel1
  • A distal enhancer and an ultraconserved exon are derived from a novel retroposon
    Nature (16 April 2006)
    by Gill Bejerano, Craig B Lowe, Nadav Ahituv, Bryan King, Adam Siepel, Sofie R Salama, Edward M Rubin, James W Kent, David Haussler
    posted to bioinformatics evolution gene_expression genome by marcius on 2006-05-09 00:21:57 as ** along with 5 people and 6 groups dchughes nickluscombe djkt cisevol gjuggler G4ID EBI-regulation BioinfoCIPF SGU-CIPF Genetics-of-Gambling cis-regulatory-evolution
  • How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
    Journal of Molecular Biology, Vol. 136, No. 3. (25 January 1980), pp. 225-230.
    by Arthur M Lesk, Cyrus Chothia
    posted to biophysics comparative_modeling evolution protein_structure by marcius on 2006-04-30 01:12:36 as ** along with 2 people and 4 groups ana barry structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Physical Origins of Protein Superfamilies.
    J Mol Biol (6 February 2006)
    by Konstantin B B Zeldovich, Igor N N Berezovsky, Eugene I I Shakhnovich
    posted to biophysics computational_biology evolution protein structure by marcius on 2006-04-27 20:29:04 as ** along with 3 people and 3 groups Einat laurabailey happy_manatee structural_bioinformatics BioinfoCIPF SGU-CIPF
  • Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain.
    Proc Natl Acad Sci U S A, Vol. 103, No. 10. (7 March 2006), pp. 3669-3674.
    by P Forterre
    posted to biology dna evolution hypotesis rna virus by marcius on 2006-04-27 18:01:25 as ** along with 3 people and 4 groups Retchless jwm brixtonmc Radiation_Damage Stressosome BioinfoCIPF SGU-CIPF
  • Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins
    Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114.
    by Daniel M Weinreich, Nigel F Delaney, Mark A Depristo, Daniel L Hartl
    posted to evolution protein by marcius on 2006-04-21 17:29:24 as ** along with 14 people and 5 groups bpcusack stevanspringer barry pansapiens imouthesmp dayjm Einat i41m nirfriedman cmm RowanBarrett ramensky Vaquero Ema structural_bioinformatics Bioinformatics FAB-lab BioinfoCIPF SGU-CIPF
  • Designed divergent evolution of enzyme function
    Nature (22 February 2006)
    by Yasuo Yoshikuni, Thomas E Ferrin, Jay D Keasling
    posted to bioinformatics evolution protein_function by marcius on 2006-04-20 21:51:55 as ** along with 3 people and 2 groups lingchong tny dbikard BioinfoCIPF SGU-CIPF
  • The evolving role of microRNAs in animal gene expression.
    Bioessays, Vol. 28, No. 5. (13 April 2006), pp. 449-452.
    by Katlin B B Massirer, Amy E E Pasquinelli
    posted to evolution microrna by marcius on 2006-04-18 19:14:49 as ** along with 4 people and 4 groups eckart_bindewald tardigrade balicea dchughes G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • In silico sequence evolution with site-specific interactions along phylogenetic trees
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 716-722.
    by Tanja Gesell, Arndt von Haeseler
    posted to bioinformatics evolution by marcius on 2006-04-03 23:42:33 as ** along with 2 people and 2 groups chad_davis tale BioinfoCIPF SGU-CIPF
  • Evolving strategies for enzyme engineering
    Current Opinion in Structural Biology, Vol. 15, No. 4. (August 2005), pp. 447-452.
    by Jesse D Bloom, Michelle M Meyer, Peter Meinhold, Christopher R Otey, Derek Macmillan, Frances H Arnold
    posted to evolution experimental review by marcius on 2006-03-28 23:39:46 as ** along with 1 person and 3 groups okarsligil Bioinformatics BioinfoCIPF SGU-CIPF
  • Evolution in Four Dimensions : Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life (Life and Mind: Philosophical Issues in Biology and Psychology)
    (01 May 2005)
    by Eva Jablonka, Marion J Lamb
    posted to biology evolution by marcius on 2006-03-27 05:10:32 as ** along with 1 person and 2 groups tautai BioinfoCIPF SGU-CIPF
  • Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space
    Nucleic Acids Research, Vol. 34, No. 3. (2006), pp. 1066-1080.
    by Russell L Marsden, David Lee, Michael Maibaum, Corin Yeats, Christine A Orengo
    posted to bioinformatics evolution genome protein_domains structural_genomics by marcius on 2006-03-15 23:00:52 as ** along with 1 person and 2 groups eweaver BioinfoCIPF SGU-CIPF
  • Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function.
    J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196.
    by LA Mirny, EI Shakhnovich
    posted to biophysics evolution folding by marcius on 2006-03-14 17:21:55 as ** along with 3 people and 4 groups ana barry Einat structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Uncovering evolutionary patterns of gene expression using microarrays
    Trends in Ecology & Evolution, Vol. 21, No. 1. (January 2006), pp. 29-37.
    by Jose M Ranz, Carlos A Machado
    posted to evolution gene_expression microarray by marcius on 2006-03-14 03:00:32 as ** along with 8 people and 5 groups klo jmeppley balicea tabu cmm sameetmehta natstreet sunye Bioinformatics ProkaryoteInterestGroup FAB-lab BioinfoCIPF SGU-CIPF
  • Identification of hundreds of conserved and nonconserved human microRNAs
    Nature Genetics, Vol. 37, No. 7. (19 June 2005), pp. 766-770.
    by Isaac Bentwich, Amir Avniel, Yael Karov, Ranit Aharonov, Shlomit Gilad, Omer Barad, Adi Barzilai, Paz Einat, Uri Einav, Eti Meiri, Eilon Sharon, Yael Spector, Zvi Bentwich
    posted to evolution microrna ncrna rna by marcius on 2006-03-13 07:22:07 as ** along with 2 people and 2 groups jfr mtagaya BioinfoCIPF SGU-CIPF
  • Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.
    Genome Res (6 March 2006)
    by Dmitry B B Malko, Vsevolod J J Makeev, Andrey A A Mironov, Mikhail S S Gelfand
    posted to evolution genome by marcius on 2006-03-09 22:56:10 as ** along with 4 people and 4 groups eoghanharr indigoviolet penka stajich EisenLab Nie BioinfoCIPF SGU-CIPF
  • The path from the RNA world.
    J Mol Evol, Vol. 46, No. 1. (January 1998), pp. 1-17.
    by AM Poole, DC Jeffares, D Penny
    posted to evolution ncrna rna by marcius on 2006-03-08 17:28:19 as ** along with 1 person and 2 groups arcticrasta BioinfoCIPF SGU-CIPF
  • The involvement of RNA in ribosome function.
    Nature, Vol. 418, No. 6894. (11 July 2002), pp. 229-235.
    by PB Moore, TA Steitz
    posted to biology evolution ribosome rna by marcius on 2006-03-06 23:02:59 as ** along with 1 person and 2 groups mercaptan BioinfoCIPF SGU-CIPF
  • How RNA folds.
    J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 271-281.
    by I Tinoco, C Bustamante
    posted to biophysics evolution folding rna by marcius on 2006-03-06 23:02:38 as ** along with 8 people and 3 groups dayjm eckart_bindewald perrywoo arcticrasta condon Hosna apop physics beta BioinfoCIPF SGU-CIPF
  • Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
    Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 1-5.
    by Ken C Pang, Martin C Frith, John S Mattick
    posted to evolution ncrna by marcius on 2006-03-03 20:39:51 as ** along with 6 people and 5 groups cassj alexg eckart_bindewald andersbj dchughes mtagaya microRNA G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • Introns and the origin of nucleus-cytosol compartmentalization
    Nature, Vol. 440, No. 7080., pp. 41-45.
    by William Martin, Eugene V Koonin
    posted to evolution function hypotesis by marcius on 2006-03-01 22:57:08 as ** along with 5 people and 4 groups lyenh dayjm bala tny penka Nie BioinfoCIPF SGU-CIPF DictyosteliumGroup
  • Constructing an RNA world.
    Trends Cell Biol, Vol. 9, No. 12. (December 1999)
    by DP Bartel, PJ Unrau
    posted to evolution review rna by marcius on 2006-02-28 01:03:34 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution.
    Science (24 November 2005)
    by Kyle Kai-How K Farh, Andrew Grimson, Calvin Jan, Benjamin P P Lewis, Wendy K K Johnston, Lee P P Lim, Christopher B B Burge, David P P Bartel
    posted to evolution ncrna rna by marcius on 2006-02-27 23:14:18 as ** along with 14 people and 4 groups jfr caseybrown jerlich mfenner aprasad dayjm eckart_bindewald dpollard mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz EisenLab microRNA BioinfoCIPF SGU-CIPF
  • Design and Evolution of New Catalytic Activity with an Existing Protein Scaffold
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 535-538.
    by Hee-Sung Park, Sung-Hun Nam, Jin K Lee, Chang N Yoon, Bengt Mannervik, Stephen J Benkovic, Hak-Sung Kim
    posted to bioinformatics evolution by marcius on 2006-02-24 20:55:29 as ** along with 3 people and 2 groups shuns dayjm tny BioinfoCIPF SGU-CIPF
  • On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?
    J Struct Biol, Vol. 134, No. 2-3. (n 2001), pp. 191-203.
    by AN Lupas, CP Ponting, RB Russell
    posted to bioinformatics evolution folding protein_domains protein_fragments by marcius on 2006-02-24 06:52:09 as ** along with 1 person and 2 groups chad_davis BioinfoCIPF SGU-CIPF
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