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marti interfaces [32 articles]

Recent papers added to marti library classified by the tag interfaces. You can also see everyone's interfaces.
  • Protein binding site prediction using an empirical scoring function.
    Nucleic Acids Res, Vol. 34, No. 13. (2006), pp. 3698-3707.
    by S Liang, C Zhang, S Liu, Y Zhou
    posted to prediction interfaces by marti on 2008-08-13 18:00:57 as read along with 1 person emidio_capriotti
  • Identification of protein oligomerization states by analysis of interface conservation.
    Proc Natl Acad Sci U S A, Vol. 98, No. 6. (13 March 2001), pp. 2990-2994.
    by AH Elcock, JA McCammon
    posted to oligomerization interfaces conservation by marti on 2008-08-13 11:47:34 as **** along with 2 people bicko Evangelia
  • Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different.
    BMC Struct Biol, Vol. 5 (16 August 2005)
    by S De, O Krishnadev, N Srinivasan, N Rekha
    posted to obligate-transient interfaces by marti on 2008-07-03 14:08:38 as read along with 4 people higueruelo bicko choonpeng medic0747
  • Characterization of interfacial solvent in protein complexes and contribution of <I>wet spots</I> to the interface description
    Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (2007), pp. 1087-1095.
    by Joan Teyra, MT Pisabarro
    posted to obligate-transient interfaces interactions by marti on 2008-04-29 14:10:54 as read along with 4 people Lombardo_7 jteyra bicko choonpeng
  • The molecular architecture of protein-protein binding sites
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Dana Reichmann, Ofer Rahat, Mati Cohen, Hani Neuvirth, Gideon Schreiber
    posted to interfaces by marti on 2008-04-25 17:12:33 as read along with 5 people higueruelo bicko chad_davis choonpeng hmk
  • Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins
    BMC Bioinformatics, Vol. 8 (05 May 2007), 147.
    by Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan
    posted to prediction interfaces by marti on 2008-04-25 17:07:59 as read along with 2 people bicko zwang
  • Improved prediction of protein-protein binding sites using a support vector machines approach
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1487-1494.
    by James R Bradford, David R Westhead
    posted to svm prediction interfaces by marti on 2008-04-24 13:31:08 as read along with 8 people OriginalLurch bicko sriram_s chaleil ameetsoni cjeans Evangelia phoenixzxl
  • WHISCY: What information does surface conservation yield? Application to data-driven docking.
    Proteins (31 January 2006)
    by Sjoerd J J de Vries, Aalt D J D van Dijk, Alexandre M J J M Bonvin
    posted to prediction interfaces docking by marti on 2008-04-24 12:10:53 as read along with 2 people bicko gloria
  • ProMateus--an open research approach to protein-binding sites analysis.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by H Neuvirth, U Heinemann, D Birnbaum, N Tishby, G Schreiber
    posted to interfaces by marti on 2008-04-24 12:07:05 as read
  • Prediction-based fingerprints of protein-protein interactions
    Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 3. (2007), pp. 630-645.
    by Aleksey Porollo, Jaros&lstrok;aw Meller
    posted to prediction interfaces by marti on 2008-04-24 12:00:49 as read along with 2 people bicko choonpeng
  • The Third CAPRI Assessment Meeting Toronto, Canada, April 20-21, 2007.
    Structure, Vol. 15, No. 7. (July 2007), pp. 755-759.
    by J Janin, S Wodak
    posted to interfaces prediction by marti on 2008-04-11 16:13:39 as *** along with 2 people bicko chad_davis
  • Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e90.
    by Timothy E Reddy, Charles Delisi, Boris E Shakhnovich
    posted to interfaces prediction transcriptionfactor by marti on 2008-03-10 16:54:13 as read along with 5 people and 1 group aalibes dpollard medic0747 GustavoLacerda mircea EisenLab
  • Automatic transcription factor classifier based on functional domain composition.
    Biochem Biophys Res Commun, Vol. 347, No. 1. (18 August 2006), pp. 141-144.
    by Z Qian, YD Cai, Y Li
    posted to interfaces transcriptionfactor by marti on 2008-03-07 12:03:18 as ***
  • Predicting protein interaction sites: binding hot-spots in proteinprotein and proteinligand interfaces
    Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1335-1342.
    by Burgoyne, J Nicholas, Jackson, M Richard
    posted to hotspot interfaces prediction by marti on 2008-02-18 11:21:51 as read along with 5 people bicko chad_davis nickolay conkymacro ladab
  • On itinerant water molecules and detectability of protein-protein interfaces through comparative analysis of homologues.
    J Mol Biol, Vol. 369, No. 2. (1 June 2007), pp. 584-595.
    by I Mihalek, I Res, O Lichtarge
    posted to interfaces prediction by marti on 2008-01-28 17:07:19 as ** along with 1 person jteyra
  • Conservation and relative importance of residues across protein-protein interfaces.
    Proc Natl Acad Sci U S A, Vol. 102, No. 43. (25 October 2005), pp. 15447-15452.
    by M Guharoy, P Chakrabarti
    posted to interfaces by marti on 2008-01-28 17:06:50 as ** along with 1 person drastic
  • Statistical analysis and prediction of protein-protein interfaces
    Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366.
    by Andrew J Bordner, Ruben Abagyan
    posted to interfaces prediction by marti on 2008-01-28 17:06:30 as *** along with 6 people and 2 groups barry bicko lyongu ameetsoni cjeans Evangelia structural_bioinformatics Bioinformatics
  • Sequence comparison by sequence harmony identifies subtype-specific functional sites
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6540-6548.
    by Pirovano, Walter, Feenstra, K Anton, Heringa, Jaap
    posted to interfaces by marti on 2008-01-25 13:56:16 as *** along with 2 people and 2 groups marcius sriram_s BioinfoCIPF SGU-CIPF
  • Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins.
    J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502.
    by R Landgraf, I Xenarios, D Eisenberg
    posted to clusters interfaces by marti on 2008-01-25 13:55:38 as read along with 6 people and 2 groups barry pansapiens sriram_s cjeans mingzhi Pao-Yang structural_bioinformatics Bioinformatics
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to interfaces by marti on 2008-01-24 12:09:00 as read along with 9 people carlk bicko chad_davis choonpeng grahamc cjeans zwang niallhaslam biehl
  • The interface of protein-protein complexes: Analysis of contacts and prediction of interactions.
    Cell Mol Life Sci (15 December 2007)
    by R P Bahadur, M Zacharias
    posted to interactions interfaces prediction by marti on 2008-01-24 12:07:35 as read along with 1 person higueruelo
  • Insights into Protein-Protein Interfaces using a Bayesian Network Prediction Method
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by James R Bradford, Chris J Needham, Andrew J Bulpitt, David R Westhead
    posted to bayesian interfaces prediction by marti on 2008-01-24 12:06:36 as read along with 7 people and 2 groups paolomarcatili barry conkymacro ameetsoni grahamc massivemayhem phoenixzxl structural_bioinformatics Bioinformatics
  • Prediction of protein interaction sites from sequence profile and residue neighbor list.
    Proteins, Vol. 44, No. 3. (15 August 2001), pp. 336-343.
    by HX Zhou, Y Shan
    posted to interfaces prediction by marti on 2008-01-24 12:03:26 as read along with 2 people satsumakenji cjeans
  • PI2PE: protein interface/interior prediction engine.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (July 2007)
    by H Tjong, S Qin, HX Zhou
    posted to interfaces prediction by marti on 2008-01-24 12:02:40 as read
  • Interaction-Site Prediction for Protein Complexes: a Critical Assessment
    Bioinformatics (22 June 2007), btm323.
    by Huan-Xiang Zhou, Sanbo Qin
    posted to interfaces prediction review by marti on 2008-01-24 12:02:20 as read along with 10 people kintoki higueruelo tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi phoenixzxl
  • meta-PPISP: a meta web server for protein-protein interaction site prediction.
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3386-3387.
    by S Qin, HX Zhou
    posted to interfaces meta-methods prediction by marti on 2008-01-24 12:01:52 as read along with 2 people bicko grahamc
  • Similar binding sites and different partners: implications to shared proteins in cellular pathways.
    Structure, Vol. 15, No. 3. (March 2007), pp. 341-354.
    by O Keskin, R Nussinov
    posted to interfaces by marti on 2008-01-24 11:52:30 as read along with 3 people higueruelo bicko choonpeng
  • A dissection of specific and non-specific protein-protein interfaces.
    J Mol Biol, Vol. 336, No. 4. (27 February 2004), pp. 943-955.
    by RP Bahadur, P Chakrabarti, F Rodier, J Janin
    posted to interfaces by marti on 2008-01-24 11:52:13 as ** along with 5 people kintoki higueruelo bicko drastic choonpeng
  • Dissecting protein-protein recognition sites.
    Proteins, Vol. 47, No. 3. (15 May 2002), pp. 334-343.
    by P Chakrabarti, J Janin
    posted to interfaces by marti on 2008-01-24 11:51:55 as ** along with 1 person chad_davis
  • ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
    J Mol Biol, Vol. 338, No. 1. (16 April 2004), pp. 181-199.
    by H Neuvirth, R Raz, G Schreiber
    posted to interfaces prediction by marti on 2008-01-24 11:51:29 as read along with 4 people bicko ameetsoni cjeans Ema
  • The modular architecture of protein-protein binding interfaces.
    Proc Natl Acad Sci U S A, Vol. 102, No. 1. (4 January 2005), pp. 57-62.
    by D Reichmann, O Rahat, S Albeck, R Meged, O Dym, G Schreiber
    posted to interfaces by marti on 2008-01-24 11:50:54 as read along with 4 people rklancer bicko drastic choonpeng
  • Accurate and scalable identification of functional sites by evolutionary tracing.
    J Struct Funct Genomics, Vol. 4, No. 2-3. (2003), pp. 159-166.
    by O Lichtarge, H Yao, DM Kristensen, S Madabushi, I Mihalek
    posted to interfaces by marti on 2008-01-24 11:45:27 as ** along with 1 person sriram_s
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