Регистрация | Вход в службу | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

maximilianh library [819 articles]

Статьи, недавно добавленные в библиотеку maximilianh library ordered by importance.
  • The determinants of gene order conservation in yeasts
    Genome Biology, Vol. 8 (05 November 2007), R233.
    by Juan F Poyatos, Laurence D Hurst
    posted to genometrees synteny syntenypaper by maximilianh on 2007-12-02 21:42:13 as ***** along with 3 people and 1 group stajich cjeans hpaces Berkeley Mycology
  • Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
    BMC Genomics, Vol. 8 (18 October 2007), 378.
    by Simon Minovitsky, Philip Stegmaier, Alexander Kel, Alexey S Kondrashov, Inna Dubchak
    posted to cns cns-similarity by maximilianh on 2007-10-23 16:22:38 as ****
  • Characterization of a novel gene adjacent to PAX6, revealing synteny conservation with functional significance.
    Mamm Genome, Vol. 13, No. 2. (February 2002), pp. 102-107.
    by DA Kleinjan, A Seawright, G Elgar, V van Heyningen
    posted to synteny by maximilianh on 2007-10-08 16:10:19 as ****
  • Comparative analysis of regulatory motif discovery tools for transcription factor binding sites.
    Genomics Proteomics Bioinformatics, Vol. 5, No. 2. (May 2007), pp. 131-142.
    by W Wei, XD Yu
    posted to discovery rennes review by maximilianh on 2007-09-27 15:56:13 as **** along with 3 people natstreet nklee heliopais
  • Genome evolution in yeasts.
    Nature, Vol. 430, No. 6995. (1 July 2004), pp. 35-44.
    by B Dujon, D Sherman, G Fischer, P Durrens, S Casaregola, I Lafontaine, J De Montigny, C Marck, C Neuvéglise, E Talla, N Goffard, L Frangeul, M Aigle, V Anthouard, A Babour, V Barbe, S Barnay, S Blanchin, JM Beckerich, E Beyne, C Bleykasten, A Boisramé, J Boyer, L Cattolico, F Confanioleri, A De Daruvar, L Despons, E Fabre, C Fairhead, H Ferry-Dumazet, A Groppi, F Hantraye, C Hennequin, N Jauniaux, P Joyet, R Kachouri, A Kerrest, R Koszul, M Lemaire, I Lesur, L Ma, H Muller, JM Nicaud, M Nikolski, S Oztas, O Ozier-Kalogeropoulos, S Pellenz, S Potier, GF Richard, ML Straub, A Suleau, D Swennen, F Tekaia, M Wésolowski-Louvel, E Westhof, B Wirth, M Zeniou-Meyer, I Zivanovic, M Bolotin-Fukuhara, A Thierry, C Bouchier, B Caudron, C Scarpelli, C Gaillardin, J Weissenbach, P Wincker, JL Souciet
    posted to geneorder genes synteny by maximilianh on 2007-10-01 12:20:15 as *** along with 5 people and 3 groups evaf indigoviolet dchughes dbenn nklee EisenLab G4ID Genetics-of-Gambling
  • Functional resolution of duplicated hoxb5 genes in teleosts.
    Development (Cambridge, England) (2 October 2008)
    by Olga Jarinova, Gary Hatch, Luc Poitras, Christelle Prudhomme, Magdalena Grzyb, Josée Aubin, Félix-Antoine A Bérubé-Simard, Lucie Jeannotte, Marc Ekker
    posted to redundancy enhancer-screen cns-collaboration by maximilianh on 2008-10-07 09:36:14 as **
  • Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.
    Genome research (25 September 2008)
    by Yong Cheng, David C C King, Louis C C Dore, Xinmin Zhang, Yuepin Zhou, Ying Zhang, Christine M M Dorman, Demesew Abebe, Swathi A A Kumar, Francesca Chiaromonte, Webb Miller, Roland D D Green, Mitchell J J Weiss, Ross C C Hardison
    posted to notconserved conserved chipseq chipchip by maximilianh on 2008-10-07 09:31:26 as **
  • cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation
    Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2418-2419.
    by Jason Persampieri, Deborah I Ritter, Daniel Lees, Jessica Lehoczky, Qiang Li, Su Guo, Jeffrey H Chuang
    posted to cns-database by maximilianh on 2008-10-06 15:41:04 as **
  • Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
    Genome Res. (15 May 2008), gr.072769.107.
    by Dan Xie, Jun Cai, Na-Yu Chia, Huck Ng, Sheng Zhong
    posted to enhancerprediction by maximilianh on 2008-10-03 17:09:44 as ** along with 5 people idonaldson isimpson GustavoLacerda phoenixzxl yoonk
  • Ultraconserved coding regions outside the homeobox of mammalian Hox genes
    BMC Evolutionary Biology, Vol. 8 (24 September 2008), 260.
    by Zhenguo Lin, Hong Ma, Masatoshi Nei
    posted to ultraconserveddefinition by maximilianh on 2008-09-29 14:33:30 as ** along with 1 person carlfulp
  • Widespread ultraconservation divergence in primates.
    Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1668-1676.
    by I Ovcharenko
    posted to ultraconserved by maximilianh on 2008-09-29 14:32:37 as **
  • Comparative 3'UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines.
    PLoS ONE, Vol. 3, No. 7. (2008)
    by J Winter, S Roepcke, S Krause, EC Müller, A Otto, M Vingron, S Schweiger
    posted to 3putr by maximilianh on 2008-09-29 14:29:36 as ** along with 1 person jfr
  • 3' UTRs Are the Primary Regulators of Gene Expression in the C. elegans Germline.
    Current biology : CB (23 September 2008)
    by Christopher Merritt, Dominique Rasoloson, Darae Ko, Geraldine Seydoux
    posted to 3putr by maximilianh on 2008-09-29 14:27:43 as **
  • A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity.
    Genome research (7 August 2008)
    by Aileen M M Smith, Maria-Jose J Sanchez, George A A Follows, Sarah Kinston, Ian J J Donaldson, Anthony R R Green, Berthold Göttgens
    posted to repeated enhancer-and-repeats by maximilianh on 2008-09-29 14:19:12 as ** along with 1 person and 2 groups cisevol BergmanLab cis-regulatory-evolution
  • Protein-DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins
    Nucl. Acids Res. (18 September 2008), gkn573.
    by Shandar Ahmad, Ozlem Keskin, Akinori Sarai, Ruth Nussinov
    posted to factors by maximilianh on 2008-09-22 23:01:49 as **
  • Chromosomal clustering of genes controlled by the aire transcription factor.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (17 May 2005), pp. 7233-7238.
    by JB Johnnidis, ES Venanzi, DJ Taxman, JP Ting, CO Benoist, DJ Mathis
    posted to syntenypaper synteny geneorder genecoregulation by maximilianh on 2008-09-13 16:05:26 as **
  • OrthoCluster: a new tool for mining synteny blocks and applications in comparative genomics
    (2008), pp. 656-667.
    by Xinghuo Zeng, Matthew J Nesbitt, Jian Pei, Ke Wang, Ismael A Vergara, Nansheng Chen
    posted to syntenytools by maximilianh on 2008-09-13 16:02:25 as **
  • STREAM: Static Thermodynamic REgulAtory Model of transcription.
    Bioinformatics (Oxford, England) (6 September 2008)
    by Denis C C Bauer, Timothy L L Bailey
    posted to thermodynamicalmodels by maximilianh on 2008-09-13 00:28:02 as **
  • Shadow Enhancers as a Source of Evolutionary Novelty
    Science, Vol. 321, No. 5894. (5 September 2008), 1314.
    by Joung-Woo Hong, David A Hendrix, Michael S Levine
    posted to redundancy by maximilianh on 2008-09-05 10:48:29 as ** along with 11 people and 3 groups dlobo sebastien_vigneau Stew bpcusack Ema carlfulp Zephyrus djkt natstreet isimpson caseybrown GEB Roswell Cancer Crosstalk Jarman Lab
  • Human-Specific Gain of Function in a Developmental Enhancer
    Science, Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350.
    by Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal, Len A Pennacchio, Edward M Rubin, James P Noonan
    posted to notconserved mutations cns-similarity cns-differences by maximilianh on 2008-09-05 10:48:07 as ** along with 11 people and 1 group Stew shoshin bpcusack emptyhb Zephyrus sebastien_vigneau djkt natstreet isimpson caseybrown eskay Roswell Cancer Crosstalk
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to notconserved noalignment drosophila cross-species-enhancer composition combination cns-similarity cns-differences by maximilianh on 2008-09-05 10:47:36 as ** along with 7 people and 2 groups Stew emptyhb djkt stajich pradiptaray cisevol caseybrown Berkeley Mycology cis-regulatory-evolution
  • Germ-line transgenesis of the Tc1/ mariner superfamily transposon Minos in Ciona intestinalis
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 13. (24 June 2003), pp. 7726-7730.
    by Yasunori Sasakura, Satoko Awazu, Shota Chiba, Nori Satoh
    posted to promoter-minimal promoter by maximilianh on 2008-09-05 09:48:00 as **
  • The RNA polymerase II core promoter.
    Annu Rev Biochem, Vol. 72 (2003), pp. 449-479.
    by ST Smale, JT Kadonaga
    posted to enhancerpromotercompatibility by maximilianh on 2008-09-05 09:41:47 as ** along with 2 people yoanjacquemin xiaobeizhao
  • Tools for neuroanatomy and neurogenetics in Drosophila
    Proceedings of the National Academy of Sciences, Vol. 105, No. 28. (15 July 2008), pp. 9715-9720.
    by Barret D Pfeiffer, Arnim Jenett, Ann S Hammonds, Teri-T B Ngo, Sima Misra, Christine Murphy, Audra Scully, Joseph W Carlson, Kenneth H Wan, Todd R Laverty, Chris Mungall, Rob Svirskas, James T Kadonaga, Chris Q Doe, Michael B Eisen, Susan E Celniker, Gerald M Rubin
    posted to promoter-minimal enhancer-screen by maximilianh on 2008-09-05 09:40:58 as **
  • High-throughput enhancer trap by remobilization of transposon <I>Minos</I> in <I>Ciona intestinalis</I>
    genesis, Vol. 45, No. 5. (2007), pp. 307-317.
    by Satoko Awazu, Terumi Matsuoka, Kazuo Inaba, Nori Satoh, Yasunori Sasakura
    posted to enhancer-screen cns-enhancer-screen by maximilianh on 2008-09-05 09:40:15 as **
  • MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders.
    Bioinformatics (Oxford, England) (12 August 2008)
    by Edward Wijaya, Siu-Ming M Yiu, Ngo Thanh T Son, Rajaraman Kanagasabai, Wing-Kin K Sung
    posted to motif discovery competition by maximilianh on 2008-09-03 09:05:51 as ** along with 3 people nuin chad_davis idonaldson
  • Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by RK Shultzaberger, DY Chiang, AM Moses, MB Eisen
    posted to cns-similarity combination pwm by maximilianh on 2008-08-25 15:03:56 as **
  • Seeder: Discriminative Seeding DNA Motif Discovery.
    Bioinformatics (Oxford, England) (21 August 2008)
    by François Fauteux, Mathieu Blanchette, Martina V V Strömvik
    posted to rennes motif discovery competition by maximilianh on 2008-08-25 15:00:09 as ** along with 4 people nuin brant isimpson idonaldson
  • Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors.
    Bioinformatics (Oxford, England) (27 June 2008)
    by Jiajian Liu, Gary D D Stormo
    posted to pwm pwmimprovement by maximilianh on 2008-08-25 14:53:29 as ** along with 3 people dakelley aalibes nklee
  • Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.
    Nature methods (17 August 2008)
    by Anton Valouev, David S S Johnson, Andreas Sundquist, Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M M Myers, Arend Sidow
    posted to chipseq discovery motif by maximilianh on 2008-08-21 18:31:46 as ** along with 9 people mdperry idonaldson gdb megraw kengg alhufton jyuh kjglennie bryankr
  • Computational biology resources lack persistence and usability.
    PLoS computational biology, Vol. 4, No. 7. (July 2008)
    by S Veretnik, JL Fink, PE Bourne
    posted to no-tag by maximilianh on 2008-08-18 12:48:21 as ** along with 6 people and 1 group jfr xjlibod dullhunk hpiwowar nuin fgibson BergmanLab
  • The cis-regulatory map of Shewanella genomes.
    Nucleic acids research (13 August 2008)
    by Jiajian Liu, Xing Xu, Gary D D Stormo
    posted to comparative discovery motif scanning by maximilianh on 2008-08-18 09:23:53 as **
  • Context differences reveal insulator and activator functions of a su(hw) binding region.
    PLoS genetics, Vol. 4, No. 8. (August 2008)
    by AA Soshnev, X Li, MD Wehling, PK Geyer
    posted to enhancer-contextanalysis insulator by maximilianh on 2008-08-18 09:20:55 as **
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to cns-differences positiveselection by maximilianh on 2008-08-18 09:17:40 as ** along with 7 people and 2 groups alhufton djkt bpcusack aprasad pradiptaray caseybrown cisevol BergmanLab cis-regulatory-evolution
  • Differential binding of quadruplex structures of muscle-specific genes regulatory sequences by MyoD, MRF4 and myogenin
    Nucl. Acids Res. (29 May 2008), gkn340.
    by Anat Yafe, Jeny Shklover, Pnina Weisman-Shomer, Eyal Bengal, Michael Fry
    posted to combination motif trainingset by maximilianh on 2008-08-14 08:47:27 as ** along with 2 people and 1 group nklee jmrivort G-quadruplex
  • Drosophila gypsy insulator and yellow enhancers regulate activity of yellow promoter through the same regulatory element
    Chromosoma, Vol. 117, No. 2. (April 2008), pp. 137-145.
    by Melnikova, Larisa, Kostuchenko, Margarita, Silicheva, Margarita, Georgiev, Pavel
    posted to enhancerpromotercompatibility interchromosomal long-range by maximilianh on 2008-08-06 14:04:11 as **
  • A deterministic motif finding algorithm with application to the human genome
    Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1047-1054.
    by Lawrence S Hon, Ajay N Jain
    posted to discovery motif by maximilianh on 2008-07-26 10:48:29 as ** along with 3 people and 1 group idonaldson dquest nklee Motif Discovery
  • Extracting sequence features to predict protein-DNA interactions: a comparative study
    Nucl. Acids Res., Vol. 36, No. 12. (1 July 2008), pp. 4137-4148.
    by Qing Zhou, Jun S Liu
    posted to review by maximilianh on 2008-07-26 10:47:36 as ** along with 1 person neils
  • Integrating regulatory motif discovery and genome-wide expression analysis
    Proceedings of the National Academy of Sciences, Vol. 100, No. 6. (18 March 2003), pp. 3339-3344.
    by Erin M Conlon, Shirley X Liu, Jason D Lieb, Jun S Liu
    posted to discovery microarray motif by maximilianh on 2008-07-26 10:46:48 as ** along with 2 people danish_punter nuin
  • Modeling Promoter Grammars with Evolving Hidden Markov Models.
    Bioinformatics (Oxford, England) (5 June 2008)
    by Kyoung-Jae J Won, Albin Sandelin, Troels Torben T Marstrand, Anders Krogh
    posted to combination motif by maximilianh on 2008-07-22 00:06:04 as ** along with 2 people lusk niallhaslam
  • Control of protein synthesis and mRNA degradation by microRNAs
    Current Opinion in Cell Biology, Vol. 20, No. 2. (April 2008), pp. 214-221.
    by Jidong Liu
    posted to microrna by maximilianh on 2008-07-08 23:10:14 as ** along with 3 people and 1 group dchughes psique heliopais microRNA
  • Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Genome Res. (26 June 2008), gr.077131.108.
    by Alisha Holloway, David Begun, Adam Siepel, Katherine Pollard
    posted to cns-ranking coding by maximilianh on 2008-07-07 22:22:57 as ** along with 3 people and 2 groups alhufton cisevol bpcusack cis-regulatory-evolution BergmanLab
  • MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs
    Nucl. Acids Res. (7 July 2008), gkn407.
    by Jianfei Hu, Haiyan Hu, Xiaoman Li
    posted to cns-similarity combination motif noalignment scanning by maximilianh on 2008-07-07 17:15:10 as **
  • Retroviral promoters in the human genome
    Bioinformatics, Vol. 24, No. 14. (15 July 2008), pp. 1563-1567.
    by Andrew B Conley, Jittima Piriyapongsa, King I Jordan
    posted to promoter by maximilianh on 2008-07-07 11:46:22 as ** along with 2 people and 2 groups idonaldson cisevol BergmanLab cis-regulatory-evolution
  • Separate proteolipid protein/DM20 enhancers serve different lineages and stages of development.
    The Journal of neuroscience : the official journal of the Society for Neuroscience, Vol. 28, No. 27. (2 July 2008), pp. 6895-6903.
    by MC Tuason, A Rastikerdar, T Kuhlmann, C Goujet-Zalc, B Zalc, S Dib, H Friedman, A Peterson
    posted to cns-enhancer-screen enhancer-stage-specificity by maximilianh on 2008-07-07 10:17:05 as **
  • A genome-wide view of the spectrum of spontaneous mutations in yeast.
    Proceedings of the National Academy of Sciences of the United States of America (26 June 2008)
    by Michael Lynch, Way Sung, Krystalynne Morris, Nicole Coffey, Christian R R Landry, Erik B B Dopman, W Joseph J Dickinson, Kazufusa Okamoto, Shilpa Kulkarni, Daniel L L Hartl, W Kelley K Thomas
    posted to duplicates geneorder mutations tandem by maximilianh on 2008-07-03 11:09:59 as ** along with 1 person stevanspringer
  • Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data.
    Molecular phylogenetics and evolution (16 May 2008)
    by Dennis V V Lavrov, Xiujuan Wang, Michelle Kelly
    posted to geneorder syntenypaper by maximilianh on 2008-06-30 09:08:20 as **
  • Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i165-171.
    by Lucas D Ward, Harmen J Bussemaker
    posted to noalignment by maximilianh on 2008-06-27 15:59:14 as ** along with 2 people hplatero xili03
  • The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator.
    Journal of biotechnology (3 June 2008)
    by Thomas A A Kohl, Jan Baumbach, Britta Jungwirth, Alfred Pühler, Andreas Tauch
    posted to application by maximilianh on 2008-06-26 16:32:01 as **
  • Non-random retention of protein-coding overlapping genes in Metazoa
    BMC Genomics, Vol. 9 (16 April 2008), 174.
    by Giulia Solda', Mikita Suyama, Paride Pelucchi, Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria L Tenchini, Francesca D Ciccarelli
    posted to genecoregulation geneorder genes synteny syntenyorientation by maximilianh on 2008-06-23 23:59:43 as ** along with 1 person and 1 group cisevol BergmanLab
    • Вы можете ссылаться на эту страницу по адресу: http://www.citeulike.org/user/maximilianh/order/to_read

    Result page: 1 2 3 4 5 6 7 8 9 10 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.